mRNA_P-wetherbeei_contig53228.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53228.1.1
Unique NamemRNA_P-wetherbeei_contig53228.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A1F8WRI8_9DELT (DUF6531 domain-containing protein n=3 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F8WRI8_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 9.340e-15
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            + +TG+ +D +TG YY   R+Y+PTLG+ LQRDPI Y  G N+YA+ G +P+N +DP GL
Sbjct: 3151 FMYTGREYDSETGLYYYRARYYDPTLGRFLQRDPIGYGDGMNLYAYVGNNPMNWIDPLGL 3210          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A3B1D0C0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D0C0_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 2.220e-14
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            Y +TG+RFD+++G YY  NR Y+P +G+ LQRDP+ Y  G N+++  G +P+N +DP GL
Sbjct:  108 YMFTGRRFDEESGIYYYRNRQYDPAIGRFLQRDPLGYVDGMNLFSMVGNNPVNKIDPYGL 167          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A560EIY3_9PROT (RHS repeat-associated protein n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560EIY3_9PROT)

HSP 1 Score: 74.3 bits (181), Expect = 4.430e-14
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +Q+TGQ +  + G YY   R Y P+LGK  + DP  Y+ G NMYA+ GGDPINH DPTGL
Sbjct: 1132 FQYTGQAYLAEVGAYYYKARIYIPSLGKFAEPDPAGYNAGMNMYAYVGGDPINHTDPTGL 1191          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A5C7ZS34_9GAMM (Uncharacterized protein n=1 Tax=Dokdonella sp. TaxID=2291710 RepID=A0A5C7ZS34_9GAMM)

HSP 1 Score: 72.4 bits (176), Expect = 2.100e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +++TGQ++    G YY   R Y+P LG+ LQ DPI Y+   N+YA+GG DPIN VDP+G+
Sbjct:  849 FRYTGQQYLSQLGLYYYKARFYSPMLGRFLQTDPIGYADDSNLYAYGGNDPINQVDPSGM 908          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A1E4FQI7_9BACT (HintN domain-containing protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FQI7_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.110e-13
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            Y+W G+  D ++G  YM NR+Y  + G+ +QRDPI Y+GG N+Y F   DPIN  DP+GL
Sbjct: 1704 YRWNGEPLDAESGLTYMRNRYYQSSTGRFVQRDPISYAGGLNLYGFCSSDPINASDPSGL 1763          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A4S2GZS2_9PROT (Uncharacterized protein n=1 Tax=Marinicauda algicola TaxID=2029849 RepID=A0A4S2GZS2_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 5.160e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +Q+TGQ +  + G YY  NR Y+P LG+ +Q DPI  +GG N+YA+ GGDP+N  DP GL
Sbjct:  176 FQYTGQIWLANIGAYYYKNRFYHPGLGRFMQTDPIGQTGGINLYAYVGGDPVNFTDPWGL 235          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A1F9GGZ8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_01_FULL_45_74 TaxID=1797872 RepID=A0A1F9GGZ8_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 5.340e-13
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    7 WTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +TGQ +D +TG YY   R+Y+PTLG+ LQRDP+ Y  G N+Y++   +P+N VDP G 
Sbjct:  437 YTGQMYDAETGFYYYKARYYHPTLGRFLQRDPLGYVDGYNLYSYVNNNPLNWVDPMGF 494          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A1F9GGZ2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_01_FULL_45_74 TaxID=1797872 RepID=A0A1F9GGZ2_9DELT)

HSP 1 Score: 70.9 bits (172), Expect = 6.730e-13
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    7 WTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +TGQ +D +TG YY   R Y+P LG+ LQRDP+ Y  G N+YA+   +P+N VDP GL
Sbjct:  137 YTGQMYDSETGFYYYKARFYHPQLGRFLQRDPLGYVDGYNLYAYVNNNPLNWVDPLGL 194          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: UPI001FD7BFA6 (RHS repeat-associated core domain-containing protein n=1 Tax=Pontixanthobacter sp. CEM42 TaxID=2792077 RepID=UPI001FD7BFA6)

HSP 1 Score: 70.5 bits (171), Expect = 7.030e-13
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +++TGQ +  + G YY   R  +PTLG+ +QRDPI Y+ G NMYA+   DP+N +DPTGL
Sbjct:   33 FRYTGQTWIPEVGLYYYKARMLSPTLGRFMQRDPIGYADGMNMYAYVSNDPVNFIDPTGL 92          
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Match: A0A1F9GGZ3_9DELT (DUF6531 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_01_FULL_45_74 TaxID=1797872 RepID=A0A1F9GGZ3_9DELT)

HSP 1 Score: 70.9 bits (172), Expect = 7.380e-13
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    7 WTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGDPINHVDPTGL 180
            +TGQ +D +TG YY   R+Y+PTLG+ LQRDP+ Y  G N+Y++   +P+N +DP G 
Sbjct: 3029 YTGQMYDAETGFYYYKARYYHPTLGRFLQRDPLGYIDGYNLYSYVNNNPLNWIDPLGF 3086          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53228.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F8WRI8_9DELT9.340e-1551.67DUF6531 domain-containing protein n=3 Tax=unclassi... [more]
A0A3B1D0C0_9ZZZZ2.220e-1448.33Uncharacterized protein (Fragment) n=1 Tax=hydroth... [more]
A0A560EIY3_9PROT4.430e-1455.00RHS repeat-associated protein n=1 Tax=Nitrospirill... [more]
A0A5C7ZS34_9GAMM2.100e-1350.00Uncharacterized protein n=1 Tax=Dokdonella sp. Tax... [more]
A0A1E4FQI7_9BACT2.110e-1350.00HintN domain-containing protein n=1 Tax=bacterium ... [more]
A0A4S2GZS2_9PROT5.160e-1351.67Uncharacterized protein n=1 Tax=Marinicauda algico... [more]
A0A1F9GGZ8_9DELT5.340e-1350.00Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1F9GGZ2_9DELT6.730e-1351.72Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
UPI001FD7BFA67.030e-1350.00RHS repeat-associated core domain-containing prote... [more]
A0A1F9GGZ3_9DELT7.380e-1348.28DUF6531 domain-containing protein n=1 Tax=Deltapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53228contigP-wetherbeei_contig53228:338..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog498211.CJA_3310
PFAMsRHS,RHS_repeat
Model size180
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.74e-14
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,1MVV1@1224|Proteobacteria,1RSE7@1236|Gammaproteobacteria,1FG5F@10|Cellvibrio
DescriptionTIGRFAM YD repeat protein
Cds size180
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.1749094-CDS-P-wetherbeei_contig53228:337..5171683186797.1749094-CDS-P-wetherbeei_contig53228:337..517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53228 338..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53228.1.1prot_P-wetherbeei_contig53228.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53228 338..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53228.1.1

>prot_P-wetherbeei_contig53228.1.1 ID=prot_P-wetherbeei_contig53228.1.1|Name=mRNA_P-wetherbeei_contig53228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=60bp
YQWTGQRFDKDTGHYYMLNRHYNPTLGKLLQRDPIRYSGGDNMYAFGGGD
PINHVDPTGL
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mRNA from alignment at P-wetherbeei_contig53228:338..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53228.1.1 ID=mRNA_P-wetherbeei_contig53228.1.1|Name=mRNA_P-wetherbeei_contig53228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig53228:338..517- (Phaeothamnion wetherbeei SAG_119_79)
TACCAGTGGACGGGCCAGCGTTTTGATAAAGACACCGGTCACTACTACAT GCTTAACCGCCACTACAATCCGACGTTGGGCAAGCTCTTACAGCGCGACC CCATCCGGTACTCTGGCGGCGACAATATGTATGCCTTCGGTGGCGGTGAT CCTATCAATCATGTGGACCCGACGGGACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53228:338..517-

>mRNA_P-wetherbeei_contig53228.1.1 ID=mRNA_P-wetherbeei_contig53228.1.1|Name=mRNA_P-wetherbeei_contig53228.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig53228:338..517- (Phaeothamnion wetherbeei SAG_119_79)
TACCAGTGGACGGGCCAGCGTTTTGATAAAGACACCGGTCACTACTACAT
GCTTAACCGCCACTACAATCCGACGTTGGGCAAGCTCTTACAGCGCGACC
CCATCCGGTACTCTGGCGGCGACAATATGTATGCCTTCGGTGGCGGTGAT
CCTATCAATCATGTGGACCCGACGGGACTT
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