mRNA_P-wetherbeei_contig53209.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53209.1.1
Unique NamemRNA_P-wetherbeei_contig53209.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A7C4XVS0_9HYPH (Recombination protein RecR n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XVS0_9HYPH)

HSP 1 Score: 283 bits (723), Expect = 5.990e-95
Identity = 140/180 (77.78%), Postives = 162/180 (90.00%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERLIQLL RLPGLGHRSARKAALAL+K+R++L+LPLA A+ EAA++L  C  CGN+DT+ PC IC+DERRD +LIVVVEQ+GDLWALERA   NARYHVLGGHLSPLDGIGP++LNIP LIERARDP V+EVLLALS+TVEG ST H+LR+ALAG +V+VSELAKGVPVGGELD+LDE
Sbjct:    9 EIERLIQLLSRLPGLGHRSARKAALALLKKRNDLMLPLAAALTEAADKLKVCPRCGNIDTVSPCTICQDERRDPSLIVVVEQVGDLWALERAGVTNARYHVLGGHLSPLDGIGPERLNIPGLIERARDPAVTEVLLALSATVEGQSTVHYLRDALAGTDVTVSELAKGVPVGGELDFLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A6N6T469_9HYPH (Recombination protein RecR n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T469_9HYPH)

HSP 1 Score: 259 bits (663), Expect = 7.890e-86
Identity = 130/180 (72.22%), Postives = 155/180 (86.11%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERL+QLL RLPGLGHRSARKAALAL+K+R++LL PLA A+ EAA ++ ECS+CGN+DT+DPC ICRD RRD +LIVVVE+IGDLWALERA  V   YHVLGGHLSPLDGIGPD+LNI +LIERA  P V+E+LLAL++TVEG STAH+L E L G  ++V+ LA+GVP+GGELDYLDE
Sbjct:    9 EIERLVQLLARLPGLGHRSARKAALALIKKRTDLLEPLAAALAEAAAKIVECSSCGNIDTVDPCTICRDPRRDASLIVVVEEIGDLWALERAGVVKGLYHVLGGHLSPLDGIGPDRLNIGRLIERAAPP-VTEILLALNATVEGQSTAHYLTEQLQGRGITVTRLAQGVPIGGELDYLDE 187          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A2W4RRV3_9PROT (Recombination protein RecR n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RRV3_9PROT)

HSP 1 Score: 259 bits (661), Expect = 1.760e-85
Identity = 130/180 (72.22%), Postives = 151/180 (83.89%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERL+QLLGRLPGLG+RSARKA LAL+KRR +LLLPL  A+ EAA +L EC  CG +DT+ PC IC+D RRD +LIVVVE I DLWALERA  VNA YHVLGGH+SPLDGIGP++LNI +LIERARDP V E+LLAL++TVEG STAH+L E L G  V++S LA+GVPVGGELDYLDE
Sbjct:   11 EIERLVQLLGRLPGLGYRSARKATLALLKRRDDLLLPLTAALNEAAAKLVECPVCGTIDTVAPCTICQDPRRDRSLIVVVEDIADLWALERAGVVNAVYHVLGGHISPLDGIGPERLNIGRLIERARDPAVKEILLALNATVEGQSTAHYLTEQLEGTGVTISRLAQGVPVGGELDYLDE 190          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A833D377_9HYPH (Recombination protein RecR n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A833D377_9HYPH)

HSP 1 Score: 257 bits (656), Expect = 9.490e-85
Identity = 128/180 (71.11%), Postives = 153/180 (85.00%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERLIQLL RLPGLG RSARKAALAL+K+R++L+ PLA AM EAAER+  C +CGN+DT+ PC IC+D RRD ++IVVVE++GDLWALERA  +NARYHVLGGHLSPLDG+ P+ LNI +LIERA +P V E+LLAL++TVEG STAH+L EAL G  V+VS LA GVP+GGELDYLDE
Sbjct:    9 EIERLIQLLARLPGLGPRSARKAALALLKKRADLMAPLASAMKEAAERIIACPSCGNLDTVSPCTICQDPRRDASMIVVVEEMGDLWALERASVINARYHVLGGHLSPLDGVRPEHLNIGRLIERAHEPGVKEILLALNATVEGQSTAHYLSEALQGSGVTVSRLAHGVPIGGELDYLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A2S5MZ34_HYPSQ (Recombination protein RecR n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MZ34_HYPSQ)

HSP 1 Score: 256 bits (655), Expect = 1.350e-84
Identity = 128/180 (71.11%), Postives = 151/180 (83.89%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERL+QLL RLPGLG RSARKAAL L+K+R ELLLPL+ A+  A E++ EC  CGN+DT+ PC IC+D RRD +LIVVVE++GDLWALERA  VNARYHVLGGHLSPLDGIGP+KLNI  L+ERA  P V EVLLAL++TVEG STAH++ + LAG  V+VS LA+GVP+GGELDYLDE
Sbjct:    9 EIERLVQLLARLPGLGPRSARKAALGLLKKRQELLLPLSEALKTAVEKIVECPACGNLDTVSPCTICQDARRDQSLIVVVEEVGDLWALERAGVVNARYHVLGGHLSPLDGIGPEKLNIASLVERAAAPEVGEVLLALNATVEGQSTAHYVMDQLAGANVTVSRLAQGVPIGGELDYLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A2W4L0K4_9PROT (Recombination protein RecR n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L0K4_9PROT)

HSP 1 Score: 256 bits (654), Expect = 1.670e-84
Identity = 130/180 (72.22%), Postives = 151/180 (83.89%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIER+IQLL RLPGLG+RSARKAALAL+KRR ELL+PLA A+ +AA +L ECS CG +DT+DPC IC+D RRD ++IVVVE + DLWALERA   NA YHVLGGH+SPLDGIGP++LNI +LIERA  P V EVLLAL++TVEG STAH+L E L G  VSVS LA+GVPVGGELDYLDE
Sbjct:    5 EIERMIQLLSRLPGLGYRSARKAALALLKRREELLVPLAQALNDAASKLVECSVCGTIDTVDPCSICQDPRRDRSMIVVVEDVADLWALERAGVTNAVYHVLGGHISPLDGIGPERLNIGRLIERASHPEVKEVLLALNATVEGQSTAHYLTEQLEGTSVSVSRLAQGVPVGGELDYLDE 184          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A7C2QSP4_9HYPH (Recombination protein RecR n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QSP4_9HYPH)

HSP 1 Score: 253 bits (646), Expect = 3.150e-83
Identity = 133/180 (73.89%), Postives = 149/180 (82.78%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERLI LL RLPGLGHRSARKAALALVKRR++ L PLA A+ EAAER+ EC  CGN+DTL PC IC+D  RD +LIVVVE+IGDLWALERA  V   YHVLGGHLSPLDGIGPD+LNI +LIERA  P V EVLLAL++TVEG STAH+L E L G  V+V+ LA+GVPVGGELDYLDE
Sbjct:   10 EIERLIALLARLPGLGHRSARKAALALVKRRADFLEPLAAALREAAERIVECPVCGNLDTLSPCAICQDPDRDRSLIVVVEEIGDLWALERAGVVGGLYHVLGGHLSPLDGIGPDRLNIARLIERAAPP-VKEVLLALNATVEGQSTAHYLTEQLQGRGVTVTRLAQGVPVGGELDYLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A6I3KJN1_9HYPH (Recombination protein RecR n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KJN1_9HYPH)

HSP 1 Score: 253 bits (645), Expect = 4.480e-83
Identity = 126/180 (70.00%), Postives = 151/180 (83.89%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIER++QLLGRLPGLG RSARKAALAL+KRR++LL+PLAGA+ EA E++ EC TCGN+DT+ PC +C D RRD +LIVVVE+IGDLWALERA  VN  YHVLGGHLSPLDG+GPD+LNI  L++RA    V E++LAL++TVEG STAH+L E LA   V V+ LA+GVPVGGELDYLDE
Sbjct:    9 EIERIVQLLGRLPGLGPRSARKAALALIKRRNDLLVPLAGALAEAVEKIVECPTCGNLDTVSPCSLCEDPRRDRSLIVVVEEIGDLWALERAGVVNGLYHVLGGHLSPLDGVGPDRLNISGLVQRAASGEVQEIVLALNATVEGQSTAHYLTEQLAPTGVVVTRLAQGVPVGGELDYLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: A0A1Q3JVP5_9PROT (Recombination protein RecR n=1 Tax=Alphaproteobacteria bacterium 64-6 TaxID=1895710 RepID=A0A1Q3JVP5_9PROT)

HSP 1 Score: 252 bits (644), Expect = 6.350e-83
Identity = 132/180 (73.33%), Postives = 145/180 (80.56%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERLIQLL RLPGLG RSARKAALAL+KRR ELL PLA AM EAA  L  C  C N+DT+ PC IC D RRD +LIVVVE+IGDLWALERA  VN  YHVLGGHLSPLDGIGPD+LNI +L+ERA    V EVLLAL++TVEG STAH++RE LAG +V VS L  GVPVGGELDYLDE
Sbjct:    9 EIERLIQLLARLPGLGSRSARKAALALLKRRHELLEPLAAAMQEAARNLVACEVCANLDTVSPCTICSDPRRDRSLIVVVEEIGDLWALERAGVVNGLYHVLGGHLSPLDGIGPDQLNIARLVERAHTSEVREVLLALNATVEGQSTAHYVREQLAGADVKVSGLQHGVPVGGELDYLDE 188          
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Match: N0B804_9HYPH (Recombination protein RecR n=3 Tax=Hyphomicrobium TaxID=81 RepID=N0B804_9HYPH)

HSP 1 Score: 251 bits (641), Expect = 1.820e-82
Identity = 122/180 (67.78%), Postives = 154/180 (85.56%), Query Frame = 1
Query:    1 EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLSECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYHVLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHFLREALAGIEVSVSELAKGVPVGGELDYLDE 540
            EIERL+QLL RLPGLG RSARKA L+L+KRR++LLLPL+ A+ +A E++SEC  CGN+DT+ PC IC D RRD +LIVVVE++GDLWALERA  V+ARYHVLGGHLSPLDGIGP++LN+  L+ RA+ P V E+LLAL++TVEG STAH++ + LA I+V+VS LA+GVP+GGELDYLD+
Sbjct:    9 EIERLVQLLSRLPGLGPRSARKAVLSLLKRRNDLLLPLSDALQQAVEKISECPVCGNLDTVAPCSICADPRRDQSLIVVVEEVGDLWALERASIVSARYHVLGGHLSPLDGIGPEQLNVASLLTRAQSPEVKEILLALNATVEGQSTAHYISDQLATIDVTVSRLAQGVPIGGELDYLDD 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53209.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XVS0_9HYPH5.990e-9577.78Recombination protein RecR n=1 Tax=Hyphomicrobiale... [more]
A0A6N6T469_9HYPH7.890e-8672.22Recombination protein RecR n=1 Tax=Hyphomicrobiace... [more]
A0A2W4RRV3_9PROT1.760e-8572.22Recombination protein RecR n=1 Tax=Proteobacteria ... [more]
A0A833D377_9HYPH9.490e-8571.11Recombination protein RecR n=1 Tax=Hyphomicrobiace... [more]
A0A2S5MZ34_HYPSQ1.350e-8471.11Recombination protein RecR n=2 Tax=unclassified Hy... [more]
A0A2W4L0K4_9PROT1.670e-8472.22Recombination protein RecR n=1 Tax=Proteobacteria ... [more]
A0A7C2QSP4_9HYPH3.150e-8373.89Recombination protein RecR n=1 Tax=Hyphomicrobiale... [more]
A0A6I3KJN1_9HYPH4.480e-8370.00Recombination protein RecR n=1 Tax=Hyphomicrobium ... [more]
A0A1Q3JVP5_9PROT6.350e-8373.33Recombination protein RecR n=1 Tax=Alphaproteobact... [more]
N0B804_9HYPH1.820e-8267.78Recombination protein RecR n=3 Tax=Hyphomicrobium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53209contigP-wetherbeei_contig53209:1..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_37383
Preferred namerecR
PFAMsRecR,Toprim_4
Model size540
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06187
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.98e-83
EggNOG OGsCOG0353@1|root,COG0353@2|Bacteria,1MV9Q@1224|Proteobacteria,2TRZM@28211|Alphaproteobacteria,3N6PM@45401|Hyphomicrobiaceae
DescriptionMay play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Cds size540
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186797.0007985-CDS-P-wetherbeei_contig53209:0..5401683186797.0007985-CDS-P-wetherbeei_contig53209:0..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53209 1..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53209.1.1prot_P-wetherbeei_contig53209.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53209 1..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53209.1.1

>prot_P-wetherbeei_contig53209.1.1 ID=prot_P-wetherbeei_contig53209.1.1|Name=mRNA_P-wetherbeei_contig53209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
EIERLIQLLGRLPGLGHRSARKAALALVKRRSELLLPLAGAMMEAAERLS
ECSTCGNVDTLDPCVICRDERRDGTLIVVVEQIGDLWALERADAVNARYH
VLGGHLSPLDGIGPDKLNIPKLIERARDPLVSEVLLALSSTVEGASTAHF
LREALAGIEVSVSELAKGVPVGGELDYLDE
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mRNA from alignment at P-wetherbeei_contig53209:1..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53209.1.1 ID=mRNA_P-wetherbeei_contig53209.1.1|Name=mRNA_P-wetherbeei_contig53209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig53209:1..540- (Phaeothamnion wetherbeei SAG_119_79)
GAGATCGAACGGCTGATCCAGCTTCTGGGGCGGTTGCCTGGGCTTGGTCA TCGCTCGGCGCGAAAGGCGGCACTGGCGCTCGTCAAGCGTCGGTCCGAAC TGCTGCTGCCGCTCGCGGGAGCCATGATGGAGGCAGCCGAACGCCTCTCG GAATGCTCGACGTGCGGCAACGTCGATACGCTGGATCCGTGCGTGATCTG CCGCGACGAACGCCGCGACGGCACGCTGATCGTCGTGGTCGAGCAGATCG GCGACTTGTGGGCGCTCGAACGCGCCGATGCCGTCAATGCGCGTTATCAT GTGCTGGGGGGGCATTTGTCGCCGCTCGACGGCATCGGGCCGGACAAGCT CAATATCCCCAAGCTGATCGAGCGGGCGCGCGATCCGCTGGTGTCGGAGG TTCTGCTGGCGTTGTCGTCGACGGTCGAGGGTGCATCGACGGCGCACTTC CTCAGGGAAGCGCTGGCGGGTATCGAGGTGTCCGTTTCGGAACTCGCCAA GGGCGTACCCGTAGGCGGAGAGCTCGACTATCTCGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53209:1..540-

>mRNA_P-wetherbeei_contig53209.1.1 ID=mRNA_P-wetherbeei_contig53209.1.1|Name=mRNA_P-wetherbeei_contig53209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig53209:1..540- (Phaeothamnion wetherbeei SAG_119_79)
GAGATCGAACGGCTGATCCAGCTTCTGGGGCGGTTGCCTGGGCTTGGTCA
TCGCTCGGCGCGAAAGGCGGCACTGGCGCTCGTCAAGCGTCGGTCCGAAC
TGCTGCTGCCGCTCGCGGGAGCCATGATGGAGGCAGCCGAACGCCTCTCG
GAATGCTCGACGTGCGGCAACGTCGATACGCTGGATCCGTGCGTGATCTG
CCGCGACGAACGCCGCGACGGCACGCTGATCGTCGTGGTCGAGCAGATCG
GCGACTTGTGGGCGCTCGAACGCGCCGATGCCGTCAATGCGCGTTATCAT
GTGCTGGGGGGGCATTTGTCGCCGCTCGACGGCATCGGGCCGGACAAGCT
CAATATCCCCAAGCTGATCGAGCGGGCGCGCGATCCGCTGGTGTCGGAGG
TTCTGCTGGCGTTGTCGTCGACGGTCGAGGGTGCATCGACGGCGCACTTC
CTCAGGGAAGCGCTGGCGGGTATCGAGGTGTCCGTTTCGGAACTCGCCAA
GGGCGTACCCGTAGGCGGAGAGCTCGACTATCTCGACGAG
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