mRNA_P-wetherbeei_contig53207.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53207.1.1
Unique NamemRNA_P-wetherbeei_contig53207.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 5.260e-24
Identity = 50/65 (76.92%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 SRAFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVR 195
            +RAFSRVL K HF +M VVGQFNLGF+I  LGSDLFI+DQHACDEK+NFE LQ+TT +HQQPLVR
Sbjct:  694 ARAFSRVLHKEHFTQMRVVGQFNLGFMICLLGSDLFILDQHACDEKYNFEVLQQTTTIHQQPLVR 758
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: A0A7S4DFG8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFG8_HETAK)

HSP 1 Score: 99.0 bits (245), Expect = 3.050e-23
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 SRAFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVR 195
            ++A +RVL K HF  M +VGQFNLGFII +LG+DLFI+DQHACDEK+NFE LQRTT +H+Q L+R
Sbjct:   38 TKALARVLDKEHFGRMRIVGQFNLGFIIARLGADLFILDQHACDEKYNFETLQRTTAIHEQRLIR 102
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: I2CR37_NANGC (MutL_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR37_NANGC)

HSP 1 Score: 93.2 bits (230), Expect = 1.180e-20
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 SRAFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLV 192
            +R FSRVL+K H + + V+GQFNLGFII ++G+D+FI+DQHACDEK+NFE LQ TT +H+Q L+
Sbjct:   13 ARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLI 76
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: W7T5L7_9STRA (Dna mismatch repair protein pms2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T5L7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.630e-20
Identity = 40/64 (62.50%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 SRAFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLV 192
            +R FSRVL+K H + + V+GQFNLGFII ++G+D+FI+DQHACDEK+NFE LQ TT +H+Q L+
Sbjct:   39 ARVFSRVLTKSHLKRLVVLGQFNLGFIIARIGADVFILDQHACDEKYNFETLQSTTTLHEQRLI 102
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: A0A833X1G2_PHYIN (MutL C terminal dimerization domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833X1G2_PHYIN)

HSP 1 Score: 94.7 bits (234), Expect = 7.700e-20
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVR 195
            A  RVL K  F+ M V+GQFNLGFII +LG+DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR
Sbjct:  593 ALQRVLKKEDFKRMQVLGQFNLGFIIGKLGNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVR 655
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: A0A080YYD1_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1976 TaxID=1317066 RepID=A0A080YYD1_PHYPR)

HSP 1 Score: 93.6 bits (231), Expect = 1.840e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVRRAMGKL 213
            A  RVL K  F+ M V+GQFNLGFII +L +DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR  M +L
Sbjct:  378 ALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLEL 446
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: H3G7I0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7I0_PHYRM)

HSP 1 Score: 93.6 bits (231), Expect = 1.930e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVRRAMGKL 213
            A  RVL K  F+ M V+GQFNLGFII +L +DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR  M +L
Sbjct:  542 ALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLEL 610
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BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: W2Y1T4_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2Y1T4_PHYPR)

HSP 1 Score: 93.6 bits (231), Expect = 1.940e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVRRAMGKL 213
            A  RVL K  F+ M V+GQFNLGFII +L +DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR  M +L
Sbjct:  562 ALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLEL 630
[Close]
BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: A0A0W8CYU8_PHYNI (Mismatch repair endonuclease pms1 n=21 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CYU8_PHYNI)

HSP 1 Score: 93.6 bits (231), Expect = 1.950e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVRRAMGKL 213
            A  RVL K  F+ M V+GQFNLGFII +L +DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR  M +L
Sbjct:  594 ALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLEL 662
[Close]
BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Match: A0A6A3WZ68_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WZ68_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.960e-19
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    7 AFSRVLSKRHFREMSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVRRAMGKL 213
            A  RVL K  F+ M V+GQFNLGFII +L +DLFI+DQHA DEK N+E LQ+TT+MHQQPLVR  M +L
Sbjct:  615 ALQRVLKKEDFKRMEVLGQFNLGFIIGKLDNDLFIIDQHASDEKFNYETLQQTTVMHQQPLVRPLMLEL 683
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI5.260e-2476.92Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
A0A7S4DFG8_HETAK3.050e-2367.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I2CR37_NANGC1.180e-2062.50MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
W7T5L7_9STRA1.630e-2062.50Dna mismatch repair protein pms2 n=1 Tax=Nannochlo... [more]
A0A833X1G2_PHYIN7.700e-2069.84MutL C terminal dimerization domain n=1 Tax=Phytop... [more]
A0A080YYD1_PHYPR1.840e-1965.22Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
H3G7I0_PHYRM1.930e-1965.22Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
W2Y1T4_PHYPR1.940e-1965.22Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A0W8CYU8_PHYNI1.950e-1965.22Mismatch repair endonuclease pms1 n=21 Tax=Phytoph... [more]
A0A6A3WZ68_9STRA1.960e-1965.22Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53207contigP-wetherbeei_contig53207:108..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FV66
Preferred namePms1
PFAMsDNA_mis_repair,HATPase_c_3,MutL_C
Model size433
Max annot lvl2759|Eukaryota
KEGG koko:K10858
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
Exons1
Evalue2.25e-19
EggNOG OGsCOG0323@1|root,KOG1978@2759|Eukaryota
Descriptionmismatched DNA binding
Cds size174
COG categoryL
BRITEko00000,ko00001,ko00002,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.949943-UTR-P-wetherbeei_contig53207:107..1521683186796.949943-UTR-P-wetherbeei_contig53207:107..152Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53207 108..152 +
1683186796.9729927-UTR-P-wetherbeei_contig53207:326..5401683186796.9729927-UTR-P-wetherbeei_contig53207:326..540Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53207 327..540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.9629996-CDS-P-wetherbeei_contig53207:152..3261683186796.9629996-CDS-P-wetherbeei_contig53207:152..326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53207 153..326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53207.1.1prot_P-wetherbeei_contig53207.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53207 153..326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53207.1.1

>prot_P-wetherbeei_contig53207.1.1 ID=prot_P-wetherbeei_contig53207.1.1|Name=mRNA_P-wetherbeei_contig53207.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MSVVGQFNLGFIITQLGSDLFIMDQHACDEKHNFEALQRTTIMHQQPLVR
RAMGKLG*
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mRNA from alignment at P-wetherbeei_contig53207:108..540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53207.1.1 ID=mRNA_P-wetherbeei_contig53207.1.1|Name=mRNA_P-wetherbeei_contig53207.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=433bp|location=Sequence derived from alignment at P-wetherbeei_contig53207:108..540+ (Phaeothamnion wetherbeei SAG_119_79)
AGCAGGGCGTTCTCGCGGGTGCTGTCGAAGCGGCATTTCCGGGAGATGAG
CGTGGTGGGGCAGTTTAACCTTGGCTTCATCATCACGCAGCTGGGCTCGG
ACCTGTTCATCATGGACCAGCACGCCTGCGACGAGAAGCACAATTTCGAG
GCGCTGCAGCGAACCACCATCATGCACCAACAGCCACTCGTCAGGCGAGC
CATGGGGAAGCTGGGCTAGCGGCTGGCCATTGTTGTAGTGTGGTGGCTCT
TTATGCGTAATCGGACAATTTGCGCGCCACCGAGGAGGGGTATCCGCTGG
TTTTGGTTGCCGCTGGTGGAAGTGACGCTGCCGCTTGAGTGCAGTGGGGG
CGAAGGCGGCTTGATGCCCTCCCTTCCTCCTGTCGGCACCCGTTGCAGGA
GGGTCGTGCCACCAAGATCCGATTTACTTTTCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53207:108..540+

>mRNA_P-wetherbeei_contig53207.1.1 ID=mRNA_P-wetherbeei_contig53207.1.1|Name=mRNA_P-wetherbeei_contig53207.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig53207:108..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGTGGTGGGGCAGTTTAACCTTGGCTTCATCATCACGCAGCTGGG
CTCGGACCTGTTCATCATGGACCAGCACGCCTGCGACGAGAAGCACAATT
TCGAGGCGCTGCAGCGAACCACCATCATGCACCAACAGCCACTCGTCAGG
CGAGCCATGGGGAAGCTGGGCTAG
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