mRNA_P-wetherbeei_contig5320.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5320.4.1
Unique NamemRNA_P-wetherbeei_contig5320.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A835Z3I4_9STRA (Endonuclease/exonuclease/phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.340e-49
Identity = 91/147 (61.90%), Postives = 106/147 (72.11%), Query Frame = 1
Query:   10 LQELEHFVTPRQLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDLASDPCSVLPDPSDLAHGIELQ--------SAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHL 426
            L ELEHFV  RQLPLMV GD NS+PSSAVYEL+S + VS  HPDL+ DPC VLPD S+L H + LQ        SAYA V   EP YTNYT +F+GTLDYIW S   LRPLAV  VP+ +DI +CG SMPNV ASSDHV+L A++ +
Sbjct:  500 LVELEHFVMSRQLPLMVCGDLNSEPSSAVYELISTQRVSADHPDLSQDPCHVLPDASELTHNLHLQIXXXXXXXSAYAAVTLDEPPYTNYTDSFRGTLDYIWCSAPDLRPLAVMQVPSEDDIRRCGPSMPNVAASSDHVLLCADVQV 646          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A7S2RJ55_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ55_9STRA)

HSP 1 Score: 164 bits (414), Expect = 7.560e-45
Identity = 83/141 (58.87%), Postives = 96/141 (68.09%), Query Frame = 1
Query:   10 LQELEHFVTPRQLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDLASDPCSVLPDPSD-LAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLG 429
            L ELE  V PR +PL+  GDFNS PSSAVYELLS   VS GHPDL  D   +LP   + L H + L SAYA V G EP YTNYT+ F+G LDYIWYS  HLRPL V  VPT E IH  G ++PNVQ SSDHV++  ++ LG
Sbjct:  426 LMELEQLVLPRDMPLVFCGDFNSIPSSAVYELLSTSAVSDGHPDLGEDVARILPPTLEALQHNLCLMSAYAAVTGLEPVYTNYTQVFQGVLDYIWYSGQHLRPLGVLEVPTEEAIHSVGQALPNVQYSSDHVLMSVDLQLG 566          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A6S9ETF7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ETF7_HETAK)

HSP 1 Score: 163 bits (413), Expect = 1.370e-44
Identity = 81/143 (56.64%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   10 LQELEHFVTPRQLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDLAS-DPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLGSI 435
            +QELEHFV  R LPLMV+GDFNS PSSAVYE ++ + V  GHPDL S D   +LP P DL H I+L SAYA V G EP YTN++  F G LDYIW++  HLRPLAVSPVP   ++   G+ MPN   SSDH +L  ++ LG +
Sbjct:  485 MQELEHFVLSRNLPLMVVGDFNSLPSSAVYEFMAKQCVQPGHPDLVSADQHRILPSPQDLTHAIQLASAYATVQGREPPYTNHSGRFTGVLDYIWFARPHLRPLAVSPVPDLAEVEAAGEGMPNCLYSSDHALLCCDVQLGGL 627          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A7S1FRM5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRM5_9STRA)

HSP 1 Score: 152 bits (385), Expect = 7.680e-41
Identity = 77/141 (54.61%), Postives = 97/141 (68.79%), Query Frame = 1
Query:   10 LQELEHFVTPRQLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL-ASDPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLG 429
            LQELE FV  R LPLM+ GDFNS P +AVY+LLS   V  GHPD+  ++  SVLPD   L H  +L S  A VL  EPE+TNYT  FKG LDY+W+S  HLRPL  +P+P    + K G+++P+ Q SSDH+MLI++M LG
Sbjct:  434 LQELETFVLSRNLPLMICGDFNSTPDTAVYDLLSRSSVHPGHPDVNMNEEVSVLPDVRSLIHSFQLGSVNATVLREEPEHTNYTVGFKGVLDYMWFSAQHLRPLTSAPIPDESVLKKHGEALPSTQFSSDHIMLISDMQLG 574          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A6U1PWN2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1PWN2_CYCTE)

HSP 1 Score: 147 bits (371), Expect = 5.370e-40
Identity = 76/148 (51.35%), Postives = 103/148 (69.59%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL-----ASDPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLGS 432
            LQELE FV  R  QLPLM+ GDFNS P +AVY+LLS + V  GHPD+      S P ++LPDP ++ H  +L SAY  VLG EP+ TNYT  FKG LDY+WYS  +LRPL+ +PVP    + + G+++P+ + SSDH+ML+++M + S
Sbjct:  245 LQELETFVLSRGTQLPLMICGDFNSTPDTAVYDLLSRQTVHPGHPDVNINTDESVP-NILPDPMNITHSFQLGSAYQTVLGEEPKVTNYTTNFKGVLDYVWYSAQNLRPLSAAPVPDEATLIRHGEALPSTEFSSDHLMLLSDMQIMS 391          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A7S2PG38_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PG38_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.020e-39
Identity = 79/147 (53.74%), Postives = 97/147 (65.99%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL---ASDPC--SVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLG 429
            LQELE FV  R   LPLM+ GD NS P +AVY+LLS R V  GHPD+    +D    SVLPD   L+H     S Y+ V+G EP +TNYT  FKG LDYIW+S  HLRPL+  P+P  E++ K G+ +P+   SSDHVMLIA+M LG
Sbjct:  461 LQELETFVMSRGSNLPLMICGDLNSTPDTAVYDLLSRRAVHPGHPDVNLKVNDDSLPSVLPDTLSLSHSFNFGSVYSTVMGEEPPHTNYTVNFKGVLDYIWFSVQHLRPLSTVPIPDEEELLKYGEGLPSTMQSSDHVMLIADMQLG 607          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A6V2A2F9_9STRA (Hypothetical protein n=5 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2A2F9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.560e-39
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL----ASDPC-SVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHL 426
            LQELE FV  R   LPLM+ GDFNS P +AVY+LLS + V  GHPD+    A D C ++LPDP ++ H  +L S Y +VLG EP+ TN+T  FKG LDY+WYS  +L+PL+ +P+P    + + G+++P+ Q SSDHVMLI++M +
Sbjct:  487 LQELETFVLSRGTSLPLMICGDFNSTPDTAVYDLLSRQAVHPGHPDVNMPNADDSCPNILPDPMNITHSFQLMSVYNMVLGEEPKMTNFTNCFKGVLDYMWYSSHNLKPLSAAPIPDESVLTRHGEALPSTQYSSDHVMLISDMQI 632          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A7S2Y6H0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6H0_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.490e-38
Identity = 70/147 (47.62%), Postives = 99/147 (67.35%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDLA----SDPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLGS 432
            LQELE FV  R   LPL++ GDFNS P +AVY+LL+ + V  GHPD+      +  ++LPD   ++H  +L SAY  VLG EP  TN+T  FKG LDYIWYS  +LRPL+ +P+P    + K G+++P+ + SSDH+MLI+++ + S
Sbjct:   85 LQELESFVMSRGTNLPLVICGDFNSTPDTAVYDLLARQSVHPGHPDVNVTTDDNVPAILPDAMSISHSFQLGSAYQAVLGDEPWVTNFTLNFKGVLDYIWYSAQNLRPLSAAPIPDEAQLTKHGEALPSTEYSSDHIMLISDLQVVS 231          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A7S3L629_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L629_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.770e-38
Identity = 73/145 (50.34%), Postives = 99/145 (68.28%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL----ASDPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHL 426
            LQELE F+  R   LPL++ GDFNS P +AVY+LLS + V  GHPD+      D  ++LPDP ++ H  +L SAY  VLG EP  TNYT  FKGTLDYIWYS  +LRPL+ +P+P    + + G+++P+ + SSDH+MLI++  L
Sbjct:  507 LQELESFIMSRGANLPLIICGDFNSTPDTAVYDLLSRQAVHPGHPDVNVATGDDVPNILPDPMNITHSFQLGSAYQTVLGEEPWVTNYTVNFKGTLDYIWYSAQNLRPLSAAPIPDEAQLTERGEALPSTEFSSDHMMLISDFQL 651          
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Match: A0A1Z5J870_FISSO (CCR4-NOT transcription complex subunit 6 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J870_FISSO)

HSP 1 Score: 146 bits (368), Expect = 3.160e-38
Identity = 75/145 (51.72%), Postives = 100/145 (68.97%), Query Frame = 1
Query:   10 LQELEHFVTPR--QLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDL----ASDPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSPGHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHL 426
            LQELE F+  R   LPL++ GDFNS P +AVY+LLS + V  GHPDL    + D  +VLPD  ++ H  +L SAY  +LG EP  TNYT  FKGTLDYIWYS  +LRPL+ +PVP  E +   G+++P+ + SSDH+MLI++M +
Sbjct:  480 LQELESFIMSRGSNLPLVICGDFNSTPDTAVYDLLSRQSVHPGHPDLNMANSEDIPNVLPDAMNINHSFQLGSAYQTILGDEPWVTNYTVNFKGTLDYIWYSAQNLRPLSAAPVPDEERLTLHGEALPSTEFSSDHIMLISDMQI 624          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5320.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3I4_9STRA2.340e-4961.90Endonuclease/exonuclease/phosphatase n=1 Tax=Tribo... [more]
A0A7S2RJ55_9STRA7.560e-4558.87Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6S9ETF7_HETAK1.370e-4456.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1FRM5_9STRA7.680e-4154.61Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6U1PWN2_CYCTE5.370e-4051.35Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PG38_9STRA2.020e-3953.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6V2A2F9_9STRA3.560e-3950.68Hypothetical protein n=5 Tax=Lithodesmiaceae TaxID... [more]
A0A7S2Y6H0_9STRA2.490e-3847.62Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3L629_9STRA2.770e-3850.34Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5J870_FISSO3.160e-3851.72CCR4-NOT transcription complex subunit 6 n=2 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5320contigP-wetherbeei_contig5320:3017..3711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr42429
PFAMsExo_endo_phos
Model size435
Max annot lvl2836|Bacillariophyta
KEGG koko:K12603
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.81e-38
EggNOG OGsCOG5239@1|root,KOG0620@2759|Eukaryota,2XAWW@2836|Bacillariophyta
EC3.1.13.4
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size435
COG categoryK
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.8103178-CDS-P-wetherbeei_contig5320:3016..30671683186796.8103178-CDS-P-wetherbeei_contig5320:3016..3067Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 3017..3067 -
1683186796.8235059-CDS-P-wetherbeei_contig5320:3327..37111683186796.8235059-CDS-P-wetherbeei_contig5320:3327..3711Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 3328..3711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5320.4.1prot_P-wetherbeei_contig5320.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5320 3017..3711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5320.4.1

>prot_P-wetherbeei_contig5320.4.1 ID=prot_P-wetherbeei_contig5320.4.1|Name=mRNA_P-wetherbeei_contig5320.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
LFRLQELEHFVTPRQLPLMVMGDFNSDPSSAVYELLSLRGVSHGHPDLAS
DPCSVLPDPSDLAHGIELQSAYAVVLGAEPEYTNYTRTFKGTLDYIWYSP
GHLRPLAVSPVPTPEDIHKCGDSMPNVQASSDHVMLIAEMHLGSI
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mRNA from alignment at P-wetherbeei_contig5320:3017..3711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5320.4.1 ID=mRNA_P-wetherbeei_contig5320.4.1|Name=mRNA_P-wetherbeei_contig5320.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=695bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:3017..3711- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTTCGACTCCAGGAGCTGGAGCACTTTGTGACGCCTCGGCAGCTGCC CCTGATGGTGATGGGCGACTTCAATTCGGACCCGTCCTCCGCCGTCTACG AGCTCCTTTCGCTGCGGGGTGTGTCGCACGGCCACCCGGACCTCGCTTCG GACCCATGCAGCGTCCTGCCGGACCCGTCGGACTTAGCCCACGGCATTGA GCTCCAGTCGGCGTACGCCGTGGTCCTGGGAGCAGAGCCGGAGTACACCA ACTACACGCGGACGTTTAAGGGCACGCTGGACTACATCTGGTACTCGCCG GGCCACCTGCGGCCGCTGGCGGTGTCACCGGTGCCGACGCCGGAGGACAT CCACAAGTGCGGCGACAGTATGCCCAACGTCCAGGTACGGTCGATCTGTT GGAGGGTTCGGAAAAGGCCAGTTTCTTTGTCGGAAAATTCTTACGCAGGG GTTGAGAGTTTTCGGCAGGTCCAGTCGATCAGTCGGGGGTACTTTTATCT AGGTCCAGTCAAAATGCTTGTGATAATGATGAATCTGCCACTCGGTGTAT TTCGAGCGGTCAGTCTAATTTCAGACCACCACCAACCACATTTGCTGTTG CCTTACTTCATTCTTTGGTCTGCTCGCCGCCTGGTTGCACGCAGGCGTCG AGCGATCACGTGATGCTGATTGCGGAGATGCACCTCGGGAGCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5320:3017..3711-

>mRNA_P-wetherbeei_contig5320.4.1 ID=mRNA_P-wetherbeei_contig5320.4.1|Name=mRNA_P-wetherbeei_contig5320.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:3017..3711- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTTCGACTCCAGGAGCTGGAGCACTTTGTGACGCCTCGGCAGCTGCC
CCTGATGGTGATGGGCGACTTCAATTCGGACCCGTCCTCCGCCGTCTACG
AGCTCCTTTCGCTGCGGGGTGTGTCGCACGGCCACCCGGACCTCGCTTCG
GACCCATGCAGCGTCCTGCCGGACCCGTCGGACTTAGCCCACGGCATTGA
GCTCCAGTCGGCGTACGCCGTGGTCCTGGGAGCAGAGCCGGAGTACACCA
ACTACACGCGGACGTTTAAGGGCACGCTGGACTACATCTGGTACTCGCCG
GGCCACCTGCGGCCGCTGGCGGTGTCACCGGTGCCGACGCCGGAGGACAT
CCACAAGTGCGGCGACAGTATGCCCAACGTCCAGGCGTCGAGCGATCACG
TGATGCTGATTGCGGAGATGCACCTCGGGAGCATC
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