mRNA_P-wetherbeei_contig5320.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5320.2.1
Unique NamemRNA_P-wetherbeei_contig5320.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A2R5G7K9_9STRA (Chaperone protein dnaJ 13 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G7K9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.160e-11
Identity = 64/206 (31.07%), Postives = 90/206 (43.69%), Query Frame = 1
Query:    4 AAAQVRLMLRTARRKRQREEETGGLIIYEAKYGRELHVDCGQTWYMDPAV--------------AAGDADGNEEDGRGSSXXXXXXXXGGDTADLFSPA---KRPPNIDVTIQVQFFVKGSSLRLPP-RSKAGLLGFYREADAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVLPSPEAQYIG 567
            A  Q+R+M   A  KR + E + GL+I  A+YGR LH +C     M+P +              +  D D  EE     +              L  PA   + PPNIDVT+Q+ +F K ++L L    SKA LLGFY    A               + P          A+L++RY+    VYE+T  D +P+ +PS  A  IG
Sbjct:  559 ALLQMRIMASVAESKRAKAEASSGLVILCARYGRALHEECDWRPVMEPEMGDFVQRETTRPRLPSDWDMDAAEEAEAAQAAAAEEVVRPPHDPSL-GPAPYEEHPPNIDVTLQLNYFSKENALELHSGTSKANLLGFYNPCLAT-------------PSAP----------ARLFVRYKIGSWVYEVTCDDLEPLEIPSVRAVLIG 740          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A4D9D2Z6_9STRA (J domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2Z6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.650e-9
Identity = 61/207 (29.47%), Postives = 90/207 (43.48%), Query Frame = 1
Query:    1 DAAAQVRLMLRTARRKRQREEET----GGLIIYEAKYGREL---HVDCGQTWYMDPAVAAGDADGNEEDGRGSSXXXXXXXXGGDTADLFSPAKRPPNIDVTIQVQFFVKGSSLRLPPRSKAGLLGFY---READAIFDVHNVFGW----RASKAA-----RPGHGTGGEGEG-AQLWIRYEFAGRVYEITVQDCDPVVLPSPEAQY 561
            +AAAQVRLM   + RK Q E+      GGL+I EA+YG             WY+                               + D      R   +DV + +QFF   S L+LPP SKAG+LGFY        ++D           ++S AA     RP      + +   +L++RY + G+VYE+TV D +P+ LP  ++ +
Sbjct:  432 NAAAQVRLMDEASIRKAQVEKSAMKGLGGLVILEARYGTSSMPQKAPPDPEWYLL------------------------------SRDKEQALDRATALDVRVPLQFFANKSRLQLPPGSKAGMLGFYDVSANPTWLYDPSTSSDGSEPDKSSAAAFRAPLRPPRPPEAKTKARTRLYVRYSYLGKVYEVTVDDIEPLELPPMDSSH 608          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A7S2S647_9STRA (Hypothetical protein (Fragment) n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S647_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.330e-9
Identity = 68/204 (33.33%), Postives = 92/204 (45.10%), Query Frame = 1
Query:    4 AAAQVRLMLRTARRKRQREEETGGLIIYEAKYGRELHVDCGQTWYMDPAVAAGD----------ADGNEEDGRGSSXXXXXXXXGGDTADLFSPA-----KRPPNIDVTIQVQFFVKGSSLRLPP-RSKAGLLGFYREADAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVLPSPEAQYIG 567
            A  Q+ +M + A    ++ +E  GL++  A+YG  LH +C       P++   +          +D +E +     XXXXXXXX     D  +         PPNIDVT Q+ FF K  SL L   +SKA LLGFY                     +P           +L+IRY+ A  VYEITV D +PV LPS  A  IG
Sbjct:  147 AKMQMEIMSKKAELNVKQAKEKYGLVVLRARYGYRLHEECDWRDVQAPSLEKLEKLEASRPRLPSDWDEPEXXXXXXXXXXXXXXXXXXDQQASTLQVYNSHPPNIDVTTQLNFFSKEDSLELHGGKSKAQLLGFYNPC------------LGKPCVQP-----------ELYIRYQLASWVYEITVDDIEPVRLPSHRATLIG 327          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A7S0GBS1_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GBS1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.890e-6
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  271 NIDVTIQVQFFVKGSSLRLPPRSKAGLLGFYR--------------EADAIFDVHNVFGWR-----ASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVLPSPEAQYI 564
            ++D TIQ+QF+V  S+LRLP  +K+G+LGFY               ++ +I    +V           K    G  T  +     L+I+Y F G+V+E+TVQD + V LPS  A+ I
Sbjct:  355 SLDATIQLQFWVVDSTLRLPSSTKSGMLGFYDLTTVTDTPMLEKTDDSTSIPKTLSVMEMMRQLCYGEKMTDTGTATNQQ---PLLYIQYSFGGKVFELTVQDDEAVALPSALAKQI 468          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A7S3RZ78_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RZ78_EMIHU)

HSP 1 Score: 54.3 bits (129), Expect = 2.220e-5
Identity = 35/91 (38.46%), Postives = 43/91 (47.25%), Query Frame = 1
Query:  274 IDVTIQVQFFVKGSSLRLPPRSKAGLLGF--YREADAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVL 540
            +DV + +QF V  SSLRLP  SKAGL GF   R A    D H                        +LW+RYE AG V  + V+D  PV+L
Sbjct:  207 LDVRVALQFAVSRSSLRLPAGSKAGLRGFATVRPAPLTADGHRA--------------------PCELWLRYEIAGEVRTLCVEDAAPVLL 277          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: R1BSE4_EMIHU (J domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BSE4_EMIHU)

HSP 1 Score: 54.3 bits (129), Expect = 2.850e-5
Identity = 35/91 (38.46%), Postives = 43/91 (47.25%), Query Frame = 1
Query:  274 IDVTIQVQFFVKGSSLRLPPRSKAGLLGF--YREADAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVL 540
            +DV + +QF V  SSLRLP  SKAGL GF   R A    D H                        +LW+RYE AG V  + V+D  PV+L
Sbjct:  331 LDVRVALQFAVSRSSLRLPAGSKAGLRGFASVRPAPLTADGHRA--------------------PCELWLRYEIAGEVRTLCVEDAAPVLL 401          
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Match: A0A7S3XUL5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUL5_HETAK)

HSP 1 Score: 52.4 bits (124), Expect = 6.980e-5
Identity = 37/103 (35.92%), Postives = 48/103 (46.60%), Query Frame = 1
Query:  271 NIDVTIQVQFFVKGSSLRLPP-RSKAGLLGFY---READAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLWIRYEFAGRVYEITVQDCDPVVLPSPEAQYIG 567
            NIDVT+Q+QFFVK S L LP  +SK+ LLGFY   R A                               +L++RY + G  YE+   D   V LPS +A  +G
Sbjct:  114 NIDVTVQLQFFVKNSELLLPAGQSKSLLLGFYDAARHAREYGRASAAXXXXXXXXXXXXXXXXXXXXXPRLFVRYRYKGTAYELEAGDYQGVRLPSLDASALG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5320.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2R5G7K9_9STRA1.160e-1131.07Chaperone protein dnaJ 13 n=1 Tax=Hondaea fermenta... [more]
A0A4D9D2Z6_9STRA3.650e-929.47J domain-containing protein n=4 Tax=Monodopsidacea... [more]
A0A7S2S647_9STRA6.330e-933.33Hypothetical protein (Fragment) n=2 Tax=labyrinthu... [more]
A0A7S0GBS1_9STRA4.890e-634.19Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
A0A7S3RZ78_EMIHU2.220e-538.46Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1BSE4_EMIHU2.850e-538.46J domain-containing protein n=1 Tax=Emiliania huxl... [more]
A0A7S3XUL5_HETAK6.980e-535.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5320contigP-wetherbeei_contig5320:659..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G304
PFAMsDUF3395,DnaJ
Model size588
Max annot lvl2759|Eukaryota
KEGG koko:K09531
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.21e-23
EggNOG OGsCOG0484@1|root,KOG0718@2759|Eukaryota
Descriptionresponse to very low light intensity stimulus
Cds size564
COG categoryO
BRITEko00000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.7352538-UTR-P-wetherbeei_contig5320:658..6821683186796.7352538-UTR-P-wetherbeei_contig5320:658..682Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5320 659..682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.750162-CDS-P-wetherbeei_contig5320:682..7531683186796.750162-CDS-P-wetherbeei_contig5320:682..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 683..753 +
1683186796.7599094-CDS-P-wetherbeei_contig5320:965..11791683186796.7599094-CDS-P-wetherbeei_contig5320:965..1179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 966..1179 +
1683186796.7678208-CDS-P-wetherbeei_contig5320:1327..13841683186796.7678208-CDS-P-wetherbeei_contig5320:1327..1384Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 1328..1384 +
1683186796.7812736-CDS-P-wetherbeei_contig5320:1558..17801683186796.7812736-CDS-P-wetherbeei_contig5320:1558..1780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 1559..1780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5320.2.1prot_P-wetherbeei_contig5320.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5320 683..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5320.2.1

>prot_P-wetherbeei_contig5320.2.1 ID=prot_P-wetherbeei_contig5320.2.1|Name=mRNA_P-wetherbeei_contig5320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MLRTARRKRQREEETGGLIIYEAKYGRELHVDCGQTWYMDPAVAAGDADG
NEEDGRGSSATTGGGGAGGDTADLFSPAKRPPNIDVTIQVQFFVKGSSLR
LPPRSKAGLLGFYREADAIFDVHNVFGWRASKAARPGHGTGGEGEGAQLW
IRYEFAGRVYEITVQDCDPVVLPSPEAQYIGPAPLVR*
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mRNA from alignment at P-wetherbeei_contig5320:659..1780+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5320.2.1 ID=mRNA_P-wetherbeei_contig5320.2.1|Name=mRNA_P-wetherbeei_contig5320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1122bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:659..1780+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGGCGGCGCAAGTGCGGCTGATGCTTCGAACGGCCCGCCGGAAGCG CCAGCGAGAGGAGGAAACAGGCGGGCTCATCATATACGAAGCCAAGTATG TCGCCGCTTTCCGGTTTCTTTGAATTGATCATTTCTTTATTTCGGTTGTG AGGCGGAGCTACTGCTCCGGTGGCGGCTACCATTAAGCCTGTGACTTCCC AAGAAGCGTCTTGTATTGCTGGCTTCCCAAAAACCTGACTTGCCACCGCT CATGAGCTACCGCTGAGCAGACCTTGATCCACTTTTCTTCCCCGCCTCTC TTGTCAGATACGGGAGGGAACTGCACGTGGACTGCGGCCAGACGTGGTAC ATGGACCCGGCGGTGGCGGCGGGTGATGCGGACGGGAACGAGGAAGACGG GAGGGGCAGCAGCGCCACTACCGGCGGCGGCGGTGCCGGTGGGGATACTG CTGACTTGTTTTCTCCTGCGAAACGCCCTCCAAACATCGATGTTACGATT CAAGTGCAGTTCTTCGTTAAGGTAAGCGGGGCTGATACTCTAGGTGTTCC ATTCTAAAATACTGCTCCACCTATCACATGAATAGCCAAATCATTGCCGA ATGAACGTGTTTACAACCAAGTACCACGTTATTCTCTTGCGGGGGTCCCA AACTTTCCGCCCGATGCAGGGCTCGTCGCTTCGGCTGCCACCGAGGAGCA AGGCGGGCCTGCTCGGCTTTTACCGCGTCTTCGGAGGAGACGACGCTGCC GCCGAGGAGCAGTATTTCTTTGGTGGCGGCGGCGGCGGCGGCGGCGGCGG CGGCGGCGGCGGCGGCGGCGGCGGCTTCTCCGGCGGCCCCGGGCACGGCG ACAGCGGCACCGAAGGGGAAGGAGGCGGGGACAGAACCAGCTATGAGGAG GAGGCGGACGCGATTTTTGACGTGCACAACGTCTTCGGCTGGAGAGCGAG TAAAGCGGCCCGGCCGGGGCACGGAACTGGCGGGGAAGGGGAAGGAGCGC AGCTCTGGATCCGTTACGAGTTCGCTGGACGAGTCTACGAGATTACTGTG CAGGATTGCGATCCCGTCGTGCTGCCGTCTCCGGAGGCGCAGTACATCGG GCCGGCGCCACTGGTCAGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5320:659..1780+

>mRNA_P-wetherbeei_contig5320.2.1 ID=mRNA_P-wetherbeei_contig5320.2.1|Name=mRNA_P-wetherbeei_contig5320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:659..1780+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGAACGGCCCGCCGGAAGCGCCAGCGAGAGGAGGAAACAGGCGG
GCTCATCATATACGAAGCCAAATACGGGAGGGAACTGCACGTGGACTGCG
GCCAGACGTGGTACATGGACCCGGCGGTGGCGGCGGGTGATGCGGACGGG
AACGAGGAAGACGGGAGGGGCAGCAGCGCCACTACCGGCGGCGGCGGTGC
CGGTGGGGATACTGCTGACTTGTTTTCTCCTGCGAAACGCCCTCCAAACA
TCGATGTTACGATTCAAGTGCAGTTCTTCGTTAAGGGCTCGTCGCTTCGG
CTGCCACCGAGGAGCAAGGCGGGCCTGCTCGGCTTTTACCGCGAGGCGGA
CGCGATTTTTGACGTGCACAACGTCTTCGGCTGGAGAGCGAGTAAAGCGG
CCCGGCCGGGGCACGGAACTGGCGGGGAAGGGGAAGGAGCGCAGCTCTGG
ATCCGTTACGAGTTCGCTGGACGAGTCTACGAGATTACTGTGCAGGATTG
CGATCCCGTCGTGCTGCCGTCTCCGGAGGCGCAGTACATCGGGCCGGCGC
CACTGGTCAGATAG
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