mRNA_P-wetherbeei_contig5320.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5320.1.1
Unique NamemRNA_P-wetherbeei_contig5320.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5320.1.1 vs. uniprot
Match: A0A835YTL3_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.980e-9
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 ALTRHVRMRVGLKVGSNGVFVVLKLSRGGTRFALPVRIGSALDPWTILAASVVPAVVDAVV 183
            +L+  V ++VG KVG  GV VVL+  RGG RF LP+ + +A DP +IL  +VVPA VDA +
Sbjct:  587 SLSPLVHVKVGCKVGVQGVTVVLRFQRGGMRFHLPILLSAACDPLSILVGAVVPAAVDAAI 647
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTL3_9STRA8.980e-950.82J domain-containing protein n=1 Tax=Tribonema minu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5320contigP-wetherbeei_contig5320:210..437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.690595-UTR-P-wetherbeei_contig5320:209..2301683186796.690595-UTR-P-wetherbeei_contig5320:209..230Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5320 210..230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.702578-CDS-P-wetherbeei_contig5320:230..4371683186796.702578-CDS-P-wetherbeei_contig5320:230..437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5320 231..437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5320.1.1prot_P-wetherbeei_contig5320.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5320 231..437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5320.1.1

>prot_P-wetherbeei_contig5320.1.1 ID=prot_P-wetherbeei_contig5320.1.1|Name=mRNA_P-wetherbeei_contig5320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
MRVGLKVGSNGVFVVLKLSRGGTRFALPVRIGSALDPWTILAASVVPAVV
DAVVYGLLLAAKQPVALR*
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mRNA from alignment at P-wetherbeei_contig5320:210..437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5320.1.1 ID=mRNA_P-wetherbeei_contig5320.1.1|Name=mRNA_P-wetherbeei_contig5320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:210..437+ (Phaeothamnion wetherbeei SAG_119_79)
GCACTGACGCGCCACGTGCGGATGCGGGTCGGGCTCAAGGTCGGCTCGAA
CGGCGTTTTCGTGGTGCTCAAGCTGTCGCGCGGCGGAACTCGCTTCGCGC
TACCGGTCCGCATCGGCTCGGCGCTGGATCCGTGGACCATTCTGGCGGCG
TCCGTCGTGCCGGCGGTCGTGGACGCCGTCGTCTATGGACTGCTTTTAGC
GGCGAAACAGCCGGTGGCGCTCCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5320:210..437+

>mRNA_P-wetherbeei_contig5320.1.1 ID=mRNA_P-wetherbeei_contig5320.1.1|Name=mRNA_P-wetherbeei_contig5320.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig5320:210..437+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGTCGGGCTCAAGGTCGGCTCGAACGGCGTTTTCGTGGTGCTCAA
GCTGTCGCGCGGCGGAACTCGCTTCGCGCTACCGGTCCGCATCGGCTCGG
CGCTGGATCCGTGGACCATTCTGGCGGCGTCCGTCGTGCCGGCGGTCGTG
GACGCCGTCGTCTATGGACTGCTTTTAGCGGCGAAACAGCCGGTGGCGCT
CCGGTGA
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