mRNA_P-wetherbeei_contig532.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig532.2.1
Unique NamemRNA_P-wetherbeei_contig532.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: D7G2J3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J3_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 7.990e-81
Identity = 121/249 (48.59%), Postives = 162/249 (65.06%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAYDQAFAKTAV 732
            LP PD+R+ +   +L+L++ DL   +  F K+D  +RGC++L   + MLGEK+SIFGD +FELIG     EL F EWL A+ T+ LFEE E+L++CFFILDREKNG+IE DE+RMLV ML  +DPV GP GNT+ A ++L VQ DG++EFWEFE  N+AFP L +PA  L+  MM+ VWG+ WW  +K+  Q R +  R+                 Q RI+RKMG  KY+ WPC    YD+ F +  V
Sbjct:    9 LPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMLGEKKSIFGDSLFELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKDEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLFFPAFRLQVKMMQAVWGEAWWGRKKRNFQDRLELRRKHEEEDRLADANRLEAMRQRRIKRKMGACKYFCWPCGRAEYDKMFPRANV 257          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A6H5L1H5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H5_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.050e-76
Identity = 119/261 (45.59%), Postives = 166/261 (63.60%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAV------------MMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAYDQAFAKTAV 732
            LP PD+R+ +   +L+L++ DL   +  F K+D  +RGC++L   + M+GEK+SIFGD ++ELIG     EL F EWL A+ T+ LFEE E+L++CFFILDREKNG+IE +E+RMLV ML  +DPV GP GNT+ A ++L VQ DG++EFWEFE  N+AFP LL+PA  L++             MM+ VWG+ WW  +K+++Q R +  R+                 Q RI+ KMG  KY+ WPC    YD+ F +T V
Sbjct:    9 LPAPDDRLLKSIKILDLSNTDLAKVFRLFCKYDTAQRGCLSLANVYKMIGEKKSIFGDSLYELIGIRDFQELTFSEWLDAITTFCLFEEEEILRFCFFILDREKNGYIEKEEMRMLVNMLYNIDPVKGPTGNTKVAFDKLSVQQDGKIEFWEFELFNKAFPSLLFPAFRLQSTNPPAALTQTKVKMMQAVWGEAWWGRKKRKVQDRLELRRKHEEEDRLADANRLEAMRQRRIKSKMGACKYFCWPCGRAEYDKMFPRTNV 269          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.160e-57
Identity = 94/231 (40.69%), Postives = 144/231 (62.34%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELI-----GELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYY 678
            +P PD+R  +  ++  +  ++LGI ++ FR  D +  G + +  F+    EKRSIFGD IFELI     G LDFGE++ AV TY LFE+ E+L++CF+I D++KNG+IE +E+R +V +L  + P D  +GNT+ A++RL    DG+V+F EF++ NR+FP L YPA  ++  M+  + GD WW ++K+ LQ  KDR R                  Q +IR+KMG+ +Y+
Sbjct:    7 VPTPDSRTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYKFFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKARLRKMQQRKIRKKMGYVRYF 237          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A835ZCW1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.080e-53
Identity = 105/290 (36.21%), Postives = 148/290 (51.03%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNG------------------WIELDEVRMLVRMLGTVDPVDGPRGNTR------------------------------AALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAYDQ 711
            LPEPD+R++     L L + +L  A+  F+  D  ++G I L  F+ M+GE++S+FGD IF+L+G     E+DFGEWLQA+ TY LF+E +VLKYCF+ILDREK                    +I +DE ++L  +L  VD    P GNTR                               AL ++ VQ DG++EFWE E  N+AFP LLYPA  ++  M + VWG+ WW  R++ L       +EL                  R+RRK+G  ++Y  P A D Y +
Sbjct:    8 LPEPDDRIANCIKALCLNNTELAQAFDIFQAHDTAKKGTIPLATFYKMIGERKSMFGDSIFDLLGVRDTREIDFGEWLQAIVTYCLFDESDVLKYCFYILDREKQQLRKGAVGGAKADAFIKERYIVMDESKLLADLLYNVDCKRRPSGNTRNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRIALNKVPVQADGKIEFWELELFNKAFPSLLYPAFRMQVKMTQLVWGEDWWDRRRRMLNEDVATRKELERLALEADKKRRRKAYDQRVRRKLGVARFYCCPWAVDRYQE 297          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.290e-48
Identity = 90/244 (36.89%), Postives = 138/244 (56.56%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAYDQAF 717
            +P PD+R  +V + + +  ++L + +  FR+ D    G I +  F+ +  EKRSIFGDGIF+L       ELDFGE+L AV TY LFE +E+L++CF+I DR+KNG+I  +E+ +++R+L  + P +   GNTR ALE L    D +V++ EF   +  FP L YPA  ++  M+ +  G  WW ++K+ L   K R   +                + RIR+KMG  +Y F P    A+ + F
Sbjct:    7 VPNPDHRTLKVMEFINIGVKELAVFWRHFREGDKEMLGVIAIDQFYLLFHEKRSIFGDGIFDLCDIHHTEELDFGEYLVAVITYCLFEPQEILRFCFYIFDRDKNGYIMKEELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKKRYLHEEKVRRDMIEQLAARKEHARLLKLREKRIRKKMGLLRYMFCPAQRAAFRKLF 250          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 171 bits (434), Expect = 6.360e-48
Identity = 85/232 (36.64%), Postives = 135/232 (58.19%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLGEKRSIFGDGIFELI-----GELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYF 681
            +P PD+R+ +  DML+L+ +++   +  F+K+D    G I ++ F+ ++ E+R++FGD +FEL+     G LDF E++Q +ATY+LF   ++LK+CFF+ D++KNG+I+ DE+  LV ML      + P  N R AL       DG+++F EF+ +N  FP LL+PA  ++  MM    G+ WW  +K  LQ  ++    L                Q ++R KMGFF YYF
Sbjct:    5 IPVPDDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYRLIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHG----NNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWWNGKKLMLQEERNADNALEERLRLKELQRQHRNQQRQVRHKMGFFGYYF 232          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.170e-44
Identity = 93/264 (35.23%), Postives = 145/264 (54.92%), Query Frame = 1
Query:    4 PEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFD-MLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAYDQAFAKTAVGPAPEVEQLEAERRQ 777
            P  D+RV R  +M++L   D+   +  FRK D  R G +  + FF  ++ E R++FG+ IFELI      +L+FGE+LQ V TY  F+E E+L++CFFI DREKNG+I+ DE++  V +L     V     N R A + ++ Q DG+ +F EF+ +N+ FP +LYPA  ++  MM  + G+ WW ++K  L   K+  R                  Q +IR  MG  KYY  P     +D+ +   ++    E+E ++A+ R+
Sbjct:    6 PVADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQV----ANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQKKLMLTLDKEDQRSAHARMMRREFNNRERTRQKQIRHDMGPVKYYLQPSKRSMFDEKYPPMSME---ELELIKAKERE 262          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.730e-37
Identity = 78/236 (33.05%), Postives = 129/236 (54.66%), Query Frame = 1
Query:    4 PEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFD-MLGEKRSIFGDGIFELIG-----ELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRA--ALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWP 687
            P  D+R+++      L  +D+ + +  F+K D  RR  I +  F+D ++   R+IF DG+F+LI       +DFGE++ AV TY  FE  EVLK+CFF+ DR+K G+I  +E+R+ V      D + G   +T    AL+ L+ + DG+ +F EF+ ++  +P +L+PA  L+  MM+ + G+ +W  +K  L  +K+  R+                 + ++RR MG  KYY  P
Sbjct:   14 PTADDRIAKAMQTFNLKEKDIRVLWHMFKKHDKERRSIIAISDFYDKIVFVPRTIFCDGLFDLIEAADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFV------DAMHGNEMSTNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYKYREDQVRRHMGSIKYYLMP 243          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: W4FPF5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 6.210e-37
Identity = 90/271 (33.21%), Postives = 134/271 (49.45%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWD--VRRR---GCITLKMFFDMLGEKRSIFGDGIFELI-----GELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAY---DQAFAKTAVGPAPEVEQLEAERR 774
            +P PD R+ +  + L+L   DL   Y  F K D  VRR    G I    FF    E+R+  GD +F LI     G+LDF E+++A+  + L    E+LK+CFF+ D++KNG IE  E+  L+ ML +    D    N  AA+E+    GDG+V+F EF+ +N+ FP LLYP   L+  M     G++WW  R   L   KD                     + + R+ MG  +YY  PC   AY   D    + A+    +  ++EA+++
Sbjct:    7 IPAPDERMLKTIEKLQLNESDLRALYKRFSKSDKEVRRTSNSGSIDRTEFFRSFNEERTAVGDAVFALIDIDNSGQLDFSEYVEALGAFCLLNTDEILKFCFFVFDQDKNGTIEGMELDALLEMLHS----DSATSNMAAAMEKFDFNGDGKVDFKEFQILNQQFPTLLYPVYRLQQSMKVHSMGESWWNRRATLLNDLKDLKEN---GDAAAIAASKAKDRRRKTRQNMGCLRYYLCPCRRSAYVVDDSGLTEDALIEEAKQREIEAQKQ 270          
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Match: A0A485LC24_9STRA (Aste57867_19134 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC24_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.240e-36
Identity = 93/294 (31.63%), Postives = 135/294 (45.92%), Query Frame = 1
Query:    1 LPEPDNRVSRVTDMLELTSEDLGIAYAFFRK----------------------------WDVRRRGCITLKMFFDMLGEKRSIFGDGIFELI-----GELDFGEWLQAVATYSLFEEREVLKYCFFILDREKNGWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFEDINRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGXXXXXXXXXXXXXXQHRIRRKMGFFKYYFWPCAYDAY---DQAFAKTAVGPAPEVEQLEAERR 774
            +P PD R+ +  + L+L   DL   Y  F K                            W     G I    FF   GE+R+  GD +F LI     GELDF E+++A+  + L    EVLK+CFF+ D++KNG IE +E+  L+ ML      D    N  AA+E+    GDG+V+F EF  +N+ FP LLYP   L+  M E   G++WW +R   L   K  A+E                 + + ++ MG  KYY  PC   AY   D    + A+    +  +LEA+++
Sbjct:   82 VPMPDERMLKNIEKLQLNESDLKTLYKRFSKSDKEVRVLSFPSSHALSASTLVGAIATDWVCSNSGSIDRDEFFRSFGEQRTAVGDAVFALIDIDNSGELDFSEYVEALGAFCLLNTEEVLKFCFFVFDQDKNGTIEGNELDALLEMLHQ----DNATSNMAAAVEKFDFNGDGKVDFAEFVVLNQQFPALLYPVYRLQLAMKEHTMGESWWIKRADLLNELKF-AKEHPEGDQQAVAAAKAKEQRRKTKQNMGCLKYYLCPCRRSAYVVDDSGITEEALIEEAKQRELEAQKK 370          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig532.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J3_ECTSI7.990e-8148.59EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5L1H5_9PHAE1.050e-7645.59EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2C3E2_9STRA2.160e-5740.69Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZCW1_9STRA2.080e-5336.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S8V9R4_9STRA1.290e-4836.89Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2R5GWK3_9STRA6.360e-4836.64Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A7S2D7S8_9STRA3.170e-4435.23Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2S6B5_9STRA3.730e-3733.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4FPF5_9STRA6.210e-3733.21Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LC24_9STRA2.240e-3631.63Aste57867_19134 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig532contigP-wetherbeei_contig532:3165..4850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2J3
Model size777
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.31e-81
EggNOG OGs2DCZ5@1|root,2SCZN@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain protein
Ec32 orthologEc-12_001730.1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.641164-CDS-P-wetherbeei_contig532:3164..32701683186796.641164-CDS-P-wetherbeei_contig532:3164..3270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 3165..3270 -
1683186796.6504729-CDS-P-wetherbeei_contig532:3630..38031683186796.6504729-CDS-P-wetherbeei_contig532:3630..3803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 3631..3803 -
1683186796.6589112-CDS-P-wetherbeei_contig532:4188..44911683186796.6589112-CDS-P-wetherbeei_contig532:4188..4491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 4189..4491 -
1683186796.6672437-CDS-P-wetherbeei_contig532:4655..48501683186796.6672437-CDS-P-wetherbeei_contig532:4655..4850Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 4656..4850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig532.2.1prot_P-wetherbeei_contig532.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig532 3165..4850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig532.2.1

>prot_P-wetherbeei_contig532.2.1 ID=prot_P-wetherbeei_contig532.2.1|Name=mRNA_P-wetherbeei_contig532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
LPEPDNRVSRVTDMLELTSEDLGIAYAFFRKWDVRRRGCITLKMFFDMLG
EKRSIFGDGIFELIGELDFGEWLQAVATYSLFEEREVLKYCFFILDREKN
GWIELDEVRMLVRMLGTVDPVDGPRGNTRAALERLQVQGDGRVEFWEFED
INRAFPGLLYPAMHLRAVMMEKVWGDTWWAERKKRLQTRKDRARELTGEE
RRAEEKRLEHLRQHRIRRKMGFFKYYFWPCAYDAYDQAFAKTAVGPAPEV
EQLEAERRQ
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mRNA from alignment at P-wetherbeei_contig532:3165..4850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig532.2.1 ID=mRNA_P-wetherbeei_contig532.2.1|Name=mRNA_P-wetherbeei_contig532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1686bp|location=Sequence derived from alignment at P-wetherbeei_contig532:3165..4850- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCGGAGCCTGACAACCGTGTTAGCCGGGTCACCGACATGCTGGAACT AACCAGCGAGGATTTGGGCATCGCCTATGCCTTCTTCCGCAAGTGGGACG TCAGGCGGCGCGGCTGCATCACGCTCAAGATGTTCTTCGACATGCTCGGC GAGAAGCGATCCATCTTCGGCGACGGCATCTTCGAGCTCATCGGCGTCAA AGACCCCACGGCGAGCGATTCCAAAGGAATTCAAGAAAGCGAAAACACAT CCATTGAAATGATCTCTGGTCTCTTTCCACGAATGTCTTACTTCGACCAA CGTTCCAATTGGCTTCCCCGCACGCAAAACAACTTAAAACAAACACGCCC CTTTCGCAGGAGCTGGACTTCGGCGAGTGGTTGCAGGCGGTGGCGACCTA CAGCCTCTTCGAGGAGCGAGAGGTGCTCAAGTACTGCTTCTTCATCCTCG ACCGCGAGAAGAACGGCTGGATTGAGCTAGACGAGGTGCGGATGCTCGTG CGCATGCTGGGCACCGTGGACCCCGTCGACGGCCCCCGCGGTAACACCCG GGCGGCGCTCGAGCGACTGCAGGTGCAGGGTGACGGCCGCGTCGAGTTCT GGGAGTTCGAGGACATCAACCGTGCCTTCCCGGGCCTCCTGTACCCGGCC ATGCACCTCCGGGTCAGTTTTGGTGCGGCCAGTCTGAGGTTGTCGGCTAG GATGGGGTGGTTCTCGAGCTTGGAGAGCGCTCTTTTGCCTTCTGGGTGAA AAGAAAGTTTCAGCACACTGCCAGCTCTTCGAACGTGGGAGGAGGCAGTG AATACGTATATATTCCACAATGTTGGCTTCTCTTTCCAAACGTTTCGCCT TTGTCAGCTAGGCGAGGCCCTCTCCATAAAGAGAGTCATCCAAACCTGTG AGAGCCATAGATGCTGAGTCAGGCGAGATAGTCCTTGGTTGCTGACGGTT TCAGAAGATTTTTCTTTGTCGCCCTGTCAGCCCAACCTCACTGCATCCCT GCCTGCCTTGCTCCTCGCCGATCACATTCCCGCACCGATCACAACAGGCT GTGATGATGGAGAAGGTGTGGGGGGACACGTGGTGGGCGGAGCGCAAGAA GCGGCTGCAGACTCGCAAGGACCGTGCCCGCGAGCTGACGGGAGAGGAGC GGCGGGCCGAGGAGAAGCGCCTCGAGCACCTCCGGCAGCACCGCATCCGG CGCAAGATGGGCTTCTTTAAGTGAGCGAGAACGCTGAGACGCACACGGCG CGCGTTTGCCGCCCTCCTGCGGGAAAGAAGAGGGGACAGAAAAAGCCATT TGTTTTTGCGGGCGCCAGGTTCGCATTTGGTCTCGTGCTTCTCTTCTTGC GAGATTGGGGTTTGAATTCGGAACAAGATGGATCAGTGCTGCGTCATTGG AGTTCGACGTGACCACAATCACTTTCCGGCACCGGAAGCAACTCATCCGT AAACGTCTCGAATCGCGCCTGAGTAATAGAAGATGTCCTCATCATGAAGC CAGGGCATTCGTAAATTCGCATCCATTTGCTCCGCATTAACAGCCACTCC TCTTTCTCTTTCACCTCCCAAAACGCACAGGTACTACTTCTGGCCGTGCG CCTACGACGCCTACGACCAGGCCTTCGCCAAGACGGCTGTCGGACCTGCA CCGGAGGTTGAGCAGCTCGAGGCCGAGCGCCGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig532:3165..4850-

>mRNA_P-wetherbeei_contig532.2.1 ID=mRNA_P-wetherbeei_contig532.2.1|Name=mRNA_P-wetherbeei_contig532.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig532:3165..4850- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCGGAGCCTGACAACCGTGTTAGCCGGGTCACCGACATGCTGGAACT
AACCAGCGAGGATTTGGGCATCGCCTATGCCTTCTTCCGCAAGTGGGACG
TCAGGCGGCGCGGCTGCATCACGCTCAAGATGTTCTTCGACATGCTCGGC
GAGAAGCGATCCATCTTCGGCGACGGCATCTTCGAGCTCATCGGCGAGCT
GGACTTCGGCGAGTGGTTGCAGGCGGTGGCGACCTACAGCCTCTTCGAGG
AGCGAGAGGTGCTCAAGTACTGCTTCTTCATCCTCGACCGCGAGAAGAAC
GGCTGGATTGAGCTAGACGAGGTGCGGATGCTCGTGCGCATGCTGGGCAC
CGTGGACCCCGTCGACGGCCCCCGCGGTAACACCCGGGCGGCGCTCGAGC
GACTGCAGGTGCAGGGTGACGGCCGCGTCGAGTTCTGGGAGTTCGAGGAC
ATCAACCGTGCCTTCCCGGGCCTCCTGTACCCGGCCATGCACCTCCGGGC
TGTGATGATGGAGAAGGTGTGGGGGGACACGTGGTGGGCGGAGCGCAAGA
AGCGGCTGCAGACTCGCAAGGACCGTGCCCGCGAGCTGACGGGAGAGGAG
CGGCGGGCCGAGGAGAAGCGCCTCGAGCACCTCCGGCAGCACCGCATCCG
GCGCAAGATGGGCTTCTTTAAGTACTACTTCTGGCCGTGCGCCTACGACG
CCTACGACCAGGCCTTCGCCAAGACGGCTGTCGGACCTGCACCGGAGGTT
GAGCAGCTCGAGGCCGAGCGCCGCCAG
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