mRNA_P-wetherbeei_contig5317.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5317.2.1
Unique NamemRNA_P-wetherbeei_contig5317.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5317.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5317contigP-wetherbeei_contig5317:1957..3577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size429
Hectar predicted targeting categoryother localisation
Exons2
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.3027427-CDS-P-wetherbeei_contig5317:1956..23341683186796.3027427-CDS-P-wetherbeei_contig5317:1956..2334Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5317 1957..2334 -
1683186796.3109684-CDS-P-wetherbeei_contig5317:3526..35771683186796.3109684-CDS-P-wetherbeei_contig5317:3526..3577Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5317 3527..3577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5317.2.1prot_P-wetherbeei_contig5317.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5317 1957..3577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5317.2.1

>prot_P-wetherbeei_contig5317.2.1 ID=prot_P-wetherbeei_contig5317.2.1|Name=mRNA_P-wetherbeei_contig5317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
APWNGGSAAAAAVAAGARRAAILRGGADAANRGTGSVHRNRSSCRGGAAA
STRRGTARSQLHPWRVSIAGDGRRPGRVEDDVGRRPGRSDGSKSGSRGGG
GGGGCSGGSPHRHGSVAVLRIGAPLQDDWKTAGKASGGNGHCR
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mRNA from alignment at P-wetherbeei_contig5317:1957..3577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5317.2.1 ID=mRNA_P-wetherbeei_contig5317.2.1|Name=mRNA_P-wetherbeei_contig5317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1621bp|location=Sequence derived from alignment at P-wetherbeei_contig5317:1957..3577- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCTTGGAATGGAGGCTCAGCCGCTGCGGCGGCAGTAGCAGCGGGCGC
CGTACATCAAAGGAAGCTATAGGCGCGCCAGTGCTGGTGACGGCGGCAGC
CGCAGCTGCAACGGTGGCAGCGGCAGCCAGCGGAGTTGCGGCAACGGAGC
CAAGCGGCTCCCGCCAGCAGCCCCTCGTAGTCCGCCTCTGCCTCCCGCCG
GCATACCGCTGCCGTTTCCTCGCCGCCGCCGCCGCTTTGGAGCCTACCCC
TGCCGGATGCGATGCTACTTCACCGGAAGCCGCAGAGAATGATTCCCTGC
CAGTGCCGCCGCCGCCACAAGAGGGTGCGAGGGTCGTCACGTCCTCCACG
GCCGTCTTAGCGGCGCTCCCGCCCGCAGTTCTCGAAGGCCTGCTGAGCAT
GGCTGCCGACGGGAAGCTGCCCGGTGAACGCGAGCCGGTACATGCCGACC
CGTTACCGCCGCCGACGGACGGAAGCGCCGGTAGCGACTGTGAGGACGCC
GCTTTAGACGCCCAGAACAATGGCGACAGCGATGATTCGGGCACTGATTC
CGGCACCGACAAAGAGGAGACACGGAGCGGCGTTGGAATCGGCAGCAGCA
CGACTGGGTCTCTGCTTGTGGAGGTCACACTTCCCGCGTCCTTCGATCAG
AGTCACGGCGTCCCGGACGAACTGTTGCGGTGCTCGGGTGTGGCCTCCGG
CGCCGCGGCACGATGGAAGACTGCGTCCCGCCGCATCAGCGTCCTGCGAC
CGATGCTCGCGGGCTTCATGGCGCCGTGGATGATGACTGGTGGCCACATT
GGAGACGACATCGATGACAACGCCAGGAGCGGCGGCGGCAGCGATGGCGG
CAAGCGCGACGGCAGCGGCGACTATGGCGGAAACGGTGGCGGCGACAGAT
CTGCCGAGGAGGGCAGCGCGAGAAGCGATGGTTCAGAGACCAGCGCCCGC
GAGGAGGATGAAGAAAGAGAGCCGCAGGCAACAGAACTTGAATGCAAGGA
GGCGATGAACGCTACTTTCGTCGAAAGAGAGCGCGATGAACCCGGTGAGC
TCACCAGTGGCGAAGACGCCTCTGGGATGGAATGTCTCGTCGACGAAACG
GCGGGCGATGGCGACAGCGGCAGCGACGGCGGCGGCGACGACGGCCCCGG
CGAAGGAACAACGTCGAGCACCGGCAAAACCCAGTGGATGCTGCGGGAAG
TCCCGGCCACTTCCAACGCTTCCAGCGGTGACGGAGCACTCAGCGCCGAG
CGGCGATCCTTCGTGGTGGAGCTGACGCTGCCAACAGAGGAACGGGATCG
GTTCATCGCAACCGCTCAAGCTGCCGCGGCGGCGCTGCAGCGAGCACGCG
ACGCGGCACAGCTCGCTCGCAGCTGCACCCATGGAGAGTCAGCATCGCCG
GAGACGGACGGCGGCCCGGGAGAGTCGAAGACGACGTCGGGAGACGCCCC
GGCAGAAGTGACGGCAGCAAAAGTGGCAGCCGCGGAGGCGGCGGCGGCGG
TGGCTGCTCAGGAGGCAGCCCGCACCGCCATGGCAGTGTTGCCGTCTTAC
GCATTGGCGCTCCTCTTCAAGATGACTGGAAGACAGCAGGAAAAGCTTCC
GGCGGTAATGGACACTGTCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5317:1957..3577-

>mRNA_P-wetherbeei_contig5317.2.1 ID=mRNA_P-wetherbeei_contig5317.2.1|Name=mRNA_P-wetherbeei_contig5317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig5317:1957..3577- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCTTGGAATGGAGGCTCAGCCGCTGCGGCGGCAGTAGCAGCGGGCGC
CCGCCGAGCGGCGATCCTTCGTGGTGGAGCTGACGCTGCCAACAGAGGAA
CGGGATCGGTTCATCGCAACCGCTCAAGCTGCCGCGGCGGCGCTGCAGCG
AGCACGCGACGCGGCACAGCTCGCTCGCAGCTGCACCCATGGAGAGTCAG
CATCGCCGGAGACGGACGGCGGCCCGGGAGAGTCGAAGACGACGTCGGGA
GACGCCCCGGCAGAAGTGACGGCAGCAAAAGTGGCAGCCGCGGAGGCGGC
GGCGGCGGTGGCTGCTCAGGAGGCAGCCCGCACCGCCATGGCAGTGTTGC
CGTCTTACGCATTGGCGCTCCTCTTCAAGATGACTGGAAGACAGCAGGAA
AAGCTTCCGGCGGTAATGGACACTGTCGG
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