mRNA_P-wetherbeei_contig53123.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0017F002E7 (Helix-turn-helix domain-containing protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017F002E7) HSP 1 Score: 62.8 bits (151), Expect = 3.940e-12 Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query: 37 MTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
MTP E A +LKVS+SWLAKAR RG+GPP+I++GRSIRY
Sbjct: 1 MTPKEFARLLKVSVSWLAKARQRGEGPPFIQLGRSIRY 38
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI001BAB59E9 (helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0177 TaxID=2807665 RepID=UPI001BAB59E9) HSP 1 Score: 61.2 bits (147), Expect = 3.680e-11 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 PSAKPPAA---IATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
PS PP+A I L+TP +AA L +S+SWLAK R+ GDGPPYI++G ++RY
Sbjct: 8 PSGSPPSAPAVITLLLTPKQAARALNLSVSWLAKRRLAGDGPPYIKLGGAVRY 60
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A3WYB9_9BRAD (Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A TaxID=314253 RepID=A3WYB9_9BRAD) HSP 1 Score: 58.9 bits (141), Expect = 1.990e-10 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
++TP E A KVSLSWLAKAR RGDGP ++R GRS+RY
Sbjct: 18 MLTPKEFAEAQKVSLSWLAKARKRGDGPSFVRFGRSVRY 56
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0004B14D34 (helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=UPI0004B14D34) HSP 1 Score: 59.3 bits (142), Expect = 2.120e-10 Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 1 PSAKPPAAIATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
P+A P A L+TP +AA L +S+SWLAK R+ GDGPPY+++G ++RY
Sbjct: 12 PAANRPTAAPILLTPKQAARHLNLSVSWLAKRRLAGDGPPYVKLGGAVRY 61
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A3C0BWV6_9HYPH (DNA-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3C0BWV6_9HYPH) HSP 1 Score: 55.5 bits (132), Expect = 6.090e-9 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
L+TP EAA VLK S S+LAKARMRGDGP Y ++ RS+RY
Sbjct: 21 LLTPKEAAQVLKSSESFLAKARMRGDGPRYRKLSRSVRY 59
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: B6JJF5_AFIC5 (HTH_17 domain-containing protein n=1 Tax=Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) TaxID=504832 RepID=B6JJF5_AFIC5) HSP 1 Score: 55.1 bits (131), Expect = 1.020e-8 Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 PSAKPPAAIA----TLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
PS PP+A+ L+T EAA +L +S+SWLAK R+ GDGP YI++G ++RY
Sbjct: 8 PSGTPPSALPQANPVLLTSKEAARLLNLSVSWLAKRRLAGDGPAYIKMGGAVRY 61
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A2T7TUL9_9HYPH (HTH_17 domain-containing protein n=1 Tax=Microvirga sp. KLBC 81 TaxID=1862707 RepID=A0A2T7TUL9_9HYPH) HSP 1 Score: 54.7 bits (130), Expect = 1.040e-8 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
LMT EAA LKVS S+LAKARM+G GP Y+R+GR+IRY
Sbjct: 9 LMTTKEAAQRLKVSASFLAKARMKGTGPRYLRLGRAIRY 47
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI00194F3A7C (hypothetical protein n=1 Tax=Microvirga sp. BT689 TaxID=2778731 RepID=UPI00194F3A7C) HSP 1 Score: 54.7 bits (130), Expect = 1.450e-8 Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
+ TP+EAA LKVS+S+LAKARM G GP +IR GR+IRY
Sbjct: 8 VFTPSEAARELKVSISFLAKARMNGTGPTFIRCGRAIRY 46
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: A0A7Y6T9Q4_9BRAD (Helix-turn-helix domain-containing protein n=1 Tax=Bradyrhizobium septentrionale TaxID=1404411 RepID=A0A7Y6T9Q4_9BRAD) HSP 1 Score: 53.5 bits (127), Expect = 3.200e-8 Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 34 LMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
L+TP++AA LK+S SWLAKAR+ G+GPPY ++G +RY
Sbjct: 13 LLTPDDAAAYLKLSKSWLAKARLNGNGPPYHKLGGCVRY 51
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Match: UPI0019861974 (Helix-turn-helix domain-containing protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019861974) HSP 1 Score: 53.5 bits (127), Expect = 3.270e-8 Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 31 TLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRY 150
+L+TP EAA L +S+SWLAK R+ GDGP YI+ G ++RY
Sbjct: 12 SLLTPKEAARYLNLSVSWLAKRRLAGDGPIYIKTGGAVRY 51 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53123.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig53123.1.1 >prot_P-wetherbeei_contig53123.1.1 ID=prot_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=50bp PSAKPPAAIATLMTPNEAANVLKVSLSWLAKARMRGDGPPYIRVGRSIRYback to top mRNA from alignment at P-wetherbeei_contig53123:390..539+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig53123.1.1 ID=mRNA_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig53123:390..539+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig53123:390..539+ >mRNA_P-wetherbeei_contig53123.1.1 ID=mRNA_P-wetherbeei_contig53123.1.1|Name=mRNA_P-wetherbeei_contig53123.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=150bp|location=Sequence derived from alignment at P-wetherbeei_contig53123:390..539+ (Phaeothamnion wetherbeei SAG_119_79)back to top |