mRNA_P-wetherbeei_contig5311.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5311.5.1
Unique NamemRNA_P-wetherbeei_contig5311.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A3C0TT11_9PROT (N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TT11_9PROT)

HSP 1 Score: 259 bits (663), Expect = 1.380e-86
Identity = 134/165 (81.21%), Postives = 149/165 (90.30%), Query Frame = 1
Query:    1 MAKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPAGKA 495
            MA+T+P+VGIIMGSQSDWPTM  AA TLKALKVP E RIVSAHRTP RLY YA TA++RGL++IIAGAGGAAHLPGMTAALTPLPVFGVPIES++LKGQDSLLSIVQMPPG+PVGTLAIG+AGAVNAALL AAVLAL +A LAKRLD WR RQT+ V+L P G+A
Sbjct:    1 MARTSPIVGIIMGSQSDWPTMGHAATTLKALKVPHECRIVSAHRTPARLYDYAETARDRGLKVIIAGAGGAAHLPGMTAALTPLPVFGVPIESRILKGQDSLLSIVQMPPGVPVGTLAIGEAGAVNAALLAAAVLALQNADLAKRLDQWRARQTRGVSLRPDGQA 165          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A1J5SNM4_9ZZZZ (N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SNM4_9ZZZZ)

HSP 1 Score: 240 bits (612), Expect = 8.980e-79
Identity = 125/155 (80.65%), Postives = 136/155 (87.74%), Query Frame = 1
Query:   22 VGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPA 486
            VGIIMGSQSDWP +R AA+TL AL VP+E RIVSAHRTPQRLY YATTA+ RGLQ+IIAGAGGAAHLPGMTAA+TPLPVFGVPIESK LKG DSLLSIVQMP G+PVGTLAIG AGA+NAALL AAVLAL D ALA+RLD WR RQT +VA  P+
Sbjct:    7 VGIIMGSQSDWPILRHAAETLAALGVPYEQRIVSAHRTPQRLYEYATTARGRGLQVIIAGAGGAAHLPGMTAAMTPLPVFGVPIESKALKGMDSLLSIVQMPGGVPVGTLAIGKAGAINAALLAAAVLALQDEALARRLDDWRARQTAAVAEQPS 161          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: UPI00036C5C25 (5-(carboxyamino)imidazole ribonucleotide mutase n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI00036C5C25)

HSP 1 Score: 238 bits (606), Expect = 6.660e-78
Identity = 122/161 (75.78%), Postives = 139/161 (86.34%), Query Frame = 1
Query:    1 MAKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVP 483
            MA+ +P VGIIMGSQSDWPTM+ AADTL AL V +E RIVSAHRTPQRL  YATTA+ RGL+I+IAGAGGAAHLPGM A++TPLPVFGVPIESK LKGQDSLLSIVQMP G+PVGTLAIG AGA+NAALL+ +VLALND  +A  LD WR RQT++VA+ P
Sbjct:    1 MAEKSPQVGIIMGSQSDWPTMKHAADTLDALGVAYEKRIVSAHRTPQRLVEYATTARSRGLKIVIAGAGGAAHLPGMVASMTPLPVFGVPIESKSLKGQDSLLSIVQMPGGVPVGTLAIGKAGAINAALLSGSVLALNDQKIADALDTWRLRQTEAVAIEP 161          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A7HUV3_PARL1 (N5-carboxyaminoimidazole ribonucleotide mutase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HUV3_PARL1)

HSP 1 Score: 238 bits (607), Expect = 7.490e-78
Identity = 124/160 (77.50%), Postives = 140/160 (87.50%), Query Frame = 1
Query:    4 AKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVP 483
            +K  PLVGIIMGSQSDWPTMR AAD L AL VP+E+RIVSAHRTP+R++ YA +AK RGL+IIIAGAGGAAHLPGMTA+LTPLPVFGVP++SK L G+DSLLSIVQMP GIPVGTLAIG+AGA NA LL AAVLAL+D ALAKRLDA+R +QT SV L P
Sbjct:   17 SKGKPLVGIIMGSQSDWPTMRHAADALDALGVPYEARIVSAHRTPERMFDYAKSAKGRGLKIIIAGAGGAAHLPGMTASLTPLPVFGVPVQSKALSGEDSLLSIVQMPGGIPVGTLAIGEAGAKNAGLLAAAVLALSDEALAKRLDAYRAKQTDSVGLSP 176          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A838XTF5_9HYPH (N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Stappia TaxID=152161 RepID=A0A838XTF5_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 1.910e-77
Identity = 121/162 (74.69%), Postives = 141/162 (87.04%), Query Frame = 1
Query:    1 MAKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPA 486
            M    P+V IIMGSQSDWPTM+ AADTL+AL VPFE+RIVSAHRTP+RLY ++ +A++ G +++IAGAGGAAHLPGMTA++TPLPVFGVPIES+ LKG+DSLLSIVQMP GIPVGTLAIG AGAVNAALL AAVLALNDA LA RLDAWR RQ+ +VA  P+
Sbjct:    1 MTTKTPVVAIIMGSQSDWPTMKHAADTLEALGVPFEARIVSAHRTPERLYEFSRSARDAGFKVVIAGAGGAAHLPGMTASMTPLPVFGVPIESRTLKGEDSLLSIVQMPAGIPVGTLAIGRAGAVNAALLAAAVLALNDADLADRLDAWRQRQSDAVAERPS 162          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A6A8QBF9_9PROT (N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Telmatospirillum sp. TaxID=2079197 RepID=A0A6A8QBF9_9PROT)

HSP 1 Score: 236 bits (601), Expect = 4.110e-77
Identity = 122/155 (78.71%), Postives = 138/155 (89.03%), Query Frame = 1
Query:   19 LVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVP 483
            LVGIIMGSQSDWPTM  AADTLKAL+VPFE+RIVSAHRTP+RLY YAT A+ RGL++IIAGAGGAAHLPGMTA++T LPVFGVPIE++ LKG DSLLSIVQMP GIPVGTLAIG AGA+NAALL A+VLAL D AL +RL+AWR RQT +VA+ P
Sbjct:    5 LVGIIMGSQSDWPTMTHAADTLKALQVPFETRIVSAHRTPRRLYDYATGARGRGLRVIIAGAGGAAHLPGMTASMTTLPVFGVPIETRTLKGMDSLLSIVQMPGGIPVGTLAIGKAGAINAALLAASVLALGDDALTQRLEAWRQRQTDAVAVEP 159          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A2N3Q1W3_9PROT (N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Telmatospirillum siberiense TaxID=382514 RepID=A0A2N3Q1W3_9PROT)

HSP 1 Score: 234 bits (598), Expect = 1.180e-76
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1
Query:   19 LVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPA 486
            LVGIIMGSQSDWPTMR AA+TL+AL V FE+RIVSAHRTP RL  YA +A++RG+++IIAGAGGAAHLPGMTAA+TPLPVFGVPIESK LKG DSLLSI QMP GIPVGTLAIG +GA+N  LL AAVLAL D ALA+RLDAWR+RQT SVA +P+
Sbjct:    5 LVGIIMGSQSDWPTMRHAAETLEALGVTFETRIVSAHRTPDRLCDYAKSARDRGIKVIIAGAGGAAHLPGMTAAMTPLPVFGVPIESKALKGMDSLLSIAQMPGGIPVGTLAIGKSGAINGGLLAAAVLALTDPALARRLDAWRSRQTASVAEIPS 160          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: UPI000571E00C (5-(carboxyamino)imidazole ribonucleotide mutase n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI000571E00C)

HSP 1 Score: 234 bits (597), Expect = 1.620e-76
Identity = 117/161 (72.67%), Postives = 140/161 (86.96%), Query Frame = 1
Query:    1 MAKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVP 483
            M +  PLV +IMGSQSDWPTM+ A +TL AL VP+E+RIVSAHRTP+RLY +A TA+E+G ++IIAGAGGAAHLPGMTAALTPLPVFGVP++S+ L G+DSLLSIVQMP G+PVGTLAIG +GAVNAALL AAVLAL+D ALA+RLD WR +QT++VA  P
Sbjct:    1 MDRQRPLVAVIMGSQSDWPTMKAACETLDALAVPYEARIVSAHRTPERLYEFAQTAREKGFKVIIAGAGGAAHLPGMTAALTPLPVFGVPVQSRALSGKDSLLSIVQMPAGVPVGTLAIGRSGAVNAALLAAAVLALSDEALAQRLDEWRRKQTEAVAEFP 161          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: W9H0G8_9PROT (N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Skermanella TaxID=204447 RepID=W9H0G8_9PROT)

HSP 1 Score: 234 bits (598), Expect = 1.760e-76
Identity = 121/158 (76.58%), Postives = 136/158 (86.08%), Query Frame = 1
Query:   13 APLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPA 486
            APLVGIIMGSQSDWPTM+  AD L+AL VPFE+RIVSAHRTPQRL+ Y+  A+ RGL++I+AGAGGAAHLPGM AA+TPLPVFGVPIES  LKG DSLLSIVQMP G+PVGTLAIG  GA+NAALL AAVLAL+D  LA RLDAWR RQT +VA +PA
Sbjct:   18 APLVGIIMGSQSDWPTMKHGADVLEALGVPFEARIVSAHRTPQRLHDYSANARGRGLKVIVAGAGGAAHLPGMAAAMTPLPVFGVPIESHSLKGMDSLLSIVQMPGGVPVGTLAIGKPGAINAALLAAAVLALSDPDLANRLDAWRERQTAAVADIPA 175          
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Match: A0A2D4VLY4_9HYPH (N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VLY4_9HYPH)

HSP 1 Score: 234 bits (597), Expect = 1.910e-76
Identity = 120/158 (75.95%), Postives = 138/158 (87.34%), Query Frame = 1
Query:   13 APLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLYTYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQDSLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWRTRQTQSVALVPA 486
            +PLVGIIMGSQSDWPTM+ AAD L+AL +P E+RIVSAHRTP R+Y YA TA++RGL++IIAGAGGAAHLPGMTA+LTPLPVFGVP++S+ L GQDSLLSIVQMP GIPVGTLAIGDAGA NAALL AAVLALND ALA RLD +R +Q+ S+   PA
Sbjct:   14 SPLVGIIMGSQSDWPTMKNAADILEALGIPHEARIVSAHRTPDRMYDYARTARDRGLKVIIAGAGGAAHLPGMTASLTPLPVFGVPVQSRALSGQDSLLSIVQMPGGIPVGTLAIGDAGAKNAALLAAAVLALNDDALAARLDEYRAKQSASIGDAPA 171          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5311.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TT11_9PROT1.380e-8681.21N5-carboxyaminoimidazole ribonucleotide mutase n=1... [more]
A0A1J5SNM4_9ZZZZ8.980e-7980.65N5-carboxyaminoimidazole ribonucleotide mutase n=1... [more]
UPI00036C5C256.660e-7875.785-(carboxyamino)imidazole ribonucleotide mutase n=... [more]
A7HUV3_PARL17.490e-7877.50N5-carboxyaminoimidazole ribonucleotide mutase n=3... [more]
A0A838XTF5_9HYPH1.910e-7774.69N5-carboxyaminoimidazole ribonucleotide mutase n=2... [more]
A0A6A8QBF9_9PROT4.110e-7778.71N5-carboxyaminoimidazole ribonucleotide mutase n=1... [more]
A0A2N3Q1W3_9PROT1.180e-7677.56N5-carboxyaminoimidazole ribonucleotide mutase n=1... [more]
UPI000571E00C1.620e-7672.675-(carboxyamino)imidazole ribonucleotide mutase n=... [more]
W9H0G8_9PROT1.760e-7676.58N5-carboxyaminoimidazole ribonucleotide mutase n=2... [more]
A0A2D4VLY4_9HYPH1.910e-7675.95N5-carboxyaminoimidazole ribonucleotide mutase n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5311contigP-wetherbeei_contig5311:3360..3857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_2072
Preferred namepurE
PFAMsAIRC
Model size498
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC01947
KEGG koko:K01588
KEGG ReactionR07405
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-78
EggNOG OGsCOG0041@1|root,COG0041@2|Bacteria,1RCWJ@1224|Proteobacteria,2U58D@28211|Alphaproteobacteria,1JNWH@119043|Rhodobiaceae
EC5.4.99.18
DescriptionCatalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Cds size498
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.571511-CDS-P-wetherbeei_contig5311:3359..38571683186795.571511-CDS-P-wetherbeei_contig5311:3359..3857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5311 3360..3857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5311.5.1prot_P-wetherbeei_contig5311.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5311 3360..3857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5311.5.1

>prot_P-wetherbeei_contig5311.5.1 ID=prot_P-wetherbeei_contig5311.5.1|Name=mRNA_P-wetherbeei_contig5311.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MAKTAPLVGIIMGSQSDWPTMRLAADTLKALKVPFESRIVSAHRTPQRLY
TYATTAKERGLQIIIAGAGGAAHLPGMTAALTPLPVFGVPIESKVLKGQD
SLLSIVQMPPGIPVGTLAIGDAGAVNAALLTAAVLALNDAALAKRLDAWR
TRQTQSVALVPAGKA*
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mRNA from alignment at P-wetherbeei_contig5311:3360..3857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5311.5.1 ID=mRNA_P-wetherbeei_contig5311.5.1|Name=mRNA_P-wetherbeei_contig5311.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig5311:3360..3857+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAAACCGCGCCGCTGGTCGGCATCATAATGGGCAGCCAGTCCGA CTGGCCAACCATGCGCCTTGCCGCAGACACTTTGAAGGCGCTGAAAGTGC CCTTTGAAAGCCGCATTGTCTCGGCTCATCGCACCCCGCAGCGGCTTTAT ACCTATGCCACAACCGCCAAGGAGCGGGGCTTGCAGATTATCATCGCGGG CGCGGGCGGCGCGGCGCATCTGCCCGGAATGACGGCGGCGCTGACCCCCT TGCCGGTTTTCGGGGTGCCGATTGAAAGCAAAGTTCTGAAGGGCCAGGAC AGCCTGTTATCCATTGTGCAGATGCCGCCCGGCATTCCCGTTGGCACCCT GGCGATAGGCGATGCAGGCGCGGTGAATGCAGCCCTGCTGACGGCGGCAG TTCTGGCGTTGAATGATGCGGCGCTGGCAAAGCGGTTGGATGCCTGGCGG ACCCGGCAAACACAAAGCGTGGCGCTGGTCCCCGCCGGTAAGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5311:3360..3857+

>mRNA_P-wetherbeei_contig5311.5.1 ID=mRNA_P-wetherbeei_contig5311.5.1|Name=mRNA_P-wetherbeei_contig5311.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig5311:3360..3857+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCAAAACCGCGCCGCTGGTCGGCATCATAATGGGCAGCCAGTCCGA
CTGGCCAACCATGCGCCTTGCCGCAGACACTTTGAAGGCGCTGAAAGTGC
CCTTTGAAAGCCGCATTGTCTCGGCTCATCGCACCCCGCAGCGGCTTTAT
ACCTATGCCACAACCGCCAAGGAGCGGGGCTTGCAGATTATCATCGCGGG
CGCGGGCGGCGCGGCGCATCTGCCCGGAATGACGGCGGCGCTGACCCCCT
TGCCGGTTTTCGGGGTGCCGATTGAAAGCAAAGTTCTGAAGGGCCAGGAC
AGCCTGTTATCCATTGTGCAGATGCCGCCCGGCATTCCCGTTGGCACCCT
GGCGATAGGCGATGCAGGCGCGGTGAATGCAGCCCTGCTGACGGCGGCAG
TTCTGGCGTTGAATGATGCGGCGCTGGCAAAGCGGTTGGATGCCTGGCGG
ACCCGGCAAACACAAAGCGTGGCGCTGGTCCCCGCCGGTAAGGCCTGA
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