mRNA_P-wetherbeei_contig5311.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5311.3.1
Unique NamemRNA_P-wetherbeei_contig5311.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A3C0TU07_9PROT (2Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TU07_9PROT)

HSP 1 Score: 175 bits (443), Expect = 1.570e-54
Identity = 75/112 (66.96%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    1 GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICI 336
            GAP++GTPLCRL  LP  G KGF FG DV+RF+MFV+WR G L  +VNDCPHAHT LD++PDRF +L++SHLLC THGALF++ +G CVAGPCKGKRLTPVPV++   +I I
Sbjct:   14 GAPSSGTPLCRLGELPPDGAKGFTFGEDVNRFEMFVIWREGELRGYVNDCPHAHTTLDYLPDRFFSLDKSHLLCGTHGALFQVGNGLCVAGPCKGKRLTPVPVRLDGDMIRI 125          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A2D4VJQ7_9HYPH (2Fe-2S ferredoxin n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D4VJQ7_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 1.090e-43
Identity = 63/112 (56.25%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICI 336
            GAPA GT LC LD +   G KGFLFG   DRFDMF+V +NG + A+VN+CPHA TPL+  PD+FL L++  ++C+TH ALFRI+DG+C +GPC GK L P+PV++  G + I
Sbjct:    9 GAPAPGTRLCALDDIDEPGAKGFLFGRGADRFDMFLVRKNGAVRAYVNECPHAFTPLETWPDKFLTLDEERIICSTHAALFRIEDGYCTSGPCAGKSLIPIPVEVVAGEVRI 120          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A2D6T8U6_9PROT (2Fe-2S ferredoxin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T8U6_9PROT)

HSP 1 Score: 144 bits (362), Expect = 3.410e-42
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    4 APAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICI 336
            APA GT +C LD +   G +GF FG   + FD FVV   G +  +VNDCPH   PLD+ PD+FLN+ +S +LCATHGALFRI+DG C+AGPC G RLTPVP+++ DG I +
Sbjct:   11 APAVGTEICHLDDIDEVGARGFSFGQGPESFDFFVVRHGGGIEGYVNDCPHTGGPLDWKPDQFLNVNKSLILCATHGALFRIEDGACIAGPCPGARLTPVPLEVRDGAILV 121          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A845Q6Z0_9HYPH (Rieske 2Fe-2S domain-containing protein n=2 Tax=Pyruvatibacter mobilis TaxID=1712261 RepID=A0A845Q6Z0_9HYPH)

HSP 1 Score: 140 bits (353), Expect = 7.060e-41
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICIA 339
            GAPA GT LC LD +   G +GFLFG    RFDMF+V +   +  +VN+CPHA TPL+   D+FL L +  ++C+THGALFRI+DG C +GPC GKRL PVPV + DG++ I+
Sbjct:    9 GAPAPGTRLCALDEIREPGARGFLFGEGTTRFDMFIVRQGDKVVGYVNECPHAFTPLETWADKFLTLAEDEIICSTHGALFRIEDGLCTSGPCTGKRLIPVPVAVKDGMVIIS 121          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A6N6VLS1_9HYPH (Rieske 2Fe-2S domain-containing protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VLS1_9HYPH)

HSP 1 Score: 139 bits (350), Expect = 2.080e-40
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 PAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICIA 339
            P  GTPLC  D+L   G KGF FG    RFDMF+V   G   A++N+CPHAH  LD  PD+FL L+++ ++C  H ALFRI+DG CV+GPC GK LT VP++I DG+I IA
Sbjct:    3 PPPGTPLCPFDSLDDPGAKGFSFGKGQTRFDMFLVRSKGEARAYLNECPHAHARLDNWPDKFLTLDETRIICGVHAALFRIEDGFCVSGPCAGKHLTLVPIEIVDGMISIA 113          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A3C1FMB0_9PROT (Rieske domain-containing protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FMB0_9PROT)

HSP 1 Score: 138 bits (347), Expect = 3.050e-40
Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 1
Query:   43 LPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVI 330
            +P SGTKGF+ G   +R D+FV+WR+G L A++NDCPHAHTPL+  PDRFL+    +LLC THGA F + +G CV+GPC+GK LTP+PV I DG I
Sbjct:    1 MPPSGTKGFVLGSGTNRLDLFVIWRDGILRAYLNDCPHAHTPLETRPDRFLDQSGKYLLCTTHGARFTVAEGKCVSGPCRGKSLTPLPVTIRDGEI 96          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A2N3EKV8_9PROT (2Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3EKV8_9PROT)

HSP 1 Score: 137 bits (344), Expect = 1.510e-39
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICIA 339
            G PA GTPLCRLD +   G KGF+FG    RF+MF+V   G + A+VN+CPHA TPLD  PD FL  +++ ++CATH A F I DG C +GPC GK L P+ +++ DG+I IA
Sbjct:    5 GMPAPGTPLCRLDEIGEPGAKGFVFGAGTARFEMFLVRNEGEVRAYVNECPHALTPLDIWPDTFLTQDKARIICATHAAQFTIADGLCTSGPCVGKSLEPMRIEVVDGMIRIA 117          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: X5MCX7_9HYPH (Iron-sulfur cluster-binding protein, Rieske family n=2 Tax=Candidatus Phaeomarinobacter ectocarpi TaxID=1458461 RepID=X5MCX7_9HYPH)

HSP 1 Score: 132 bits (332), Expect = 8.950e-38
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1
Query:    1 GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVICIA 339
            GAPA GT LC L  +   G +GFLFG   +RFDMFVV    ++ A+VN+CPHA TPL+  PD+FL + +  ++C+THGA+F I DG C +GPC GK L  +PV I +G+I I+
Sbjct:    2 GAPAPGTQLCALSEIREPGARGFLFGEGKERFDMFVVRHGDSVTAYVNECPHAFTPLETWPDKFLTMAEDEIICSTHGAIFNIGDGLCTSGPCTGKSLIAIPVIIDNGMITIS 114          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A3A0G3C4_9PROT ((2Fe-2S)-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0G3C4_9PROT)

HSP 1 Score: 126 bits (316), Expect = 2.740e-35
Identity = 56/107 (52.34%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   10 AAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVI 330
            A GT LCR D +     +GF  G    R  +FV  R G L A+VN CPH  TPLD+ PD F + E+ HL+CATHGALFR++DG C+AGPC+G RL P P+ + DGV+
Sbjct:    4 AQGTALCRADEIADGAARGFAIGPR--RLRIFVARRGGALYAYVNRCPHVGTPLDWAPDEFFDRERRHLVCATHGALFRVEDGECIAGPCQGDRLEPFPIAVRDGVV 108          
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Match: A0A560H5W8_9PROT (Nitrite reductase/ring-hydroxylating ferredoxin subunit n=1 Tax=Nitrospirillum amazonense TaxID=28077 RepID=A0A560H5W8_9PROT)

HSP 1 Score: 124 bits (312), Expect = 1.180e-34
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    7 PAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDCPHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTPVPVKITDGVI 330
            P A +PLCRLD +P    KG  +G   DR ++ V  R G + A+ N CPH  T LD+MPD+F++ +  HL CATHGALFR++DG C+ GPC G+ LTPV V+I DG +
Sbjct:    7 PLAPSPLCRLDDIPDGQAKGINWGSGADRQEILVTRRGGAVFAYHNRCPHVGTTLDWMPDQFMSADGQHLQCATHGALFRVEDGLCLRGPCAGRGLTPVAVRIEDGAV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5311.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TU07_9PROT1.570e-5466.962Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bact... [more]
A0A2D4VJQ7_9HYPH1.090e-4356.252Fe-2S ferredoxin n=1 Tax=Parvibaculum sp. TaxID=2... [more]
A0A2D6T8U6_9PROT3.410e-4255.862Fe-2S ferredoxin n=1 Tax=Rhodospirillaceae bacter... [more]
A0A845Q6Z0_9HYPH7.060e-4153.98Rieske 2Fe-2S domain-containing protein n=2 Tax=Py... [more]
A0A6N6VLS1_9HYPH2.080e-4054.95Rieske 2Fe-2S domain-containing protein n=1 Tax=Pa... [more]
A0A3C1FMB0_9PROT3.050e-4059.38Rieske domain-containing protein n=3 Tax=Alphaprot... [more]
A0A2N3EKV8_9PROT1.510e-3953.102Fe-2S ferredoxin n=1 Tax=Alphaproteobacteria bact... [more]
X5MCX7_9HYPH8.950e-3851.33Iron-sulfur cluster-binding protein, Rieske family... [more]
A0A3A0G3C4_9PROT2.740e-3552.34(2Fe-2S)-binding protein n=1 Tax=Proteobacteria ba... [more]
A0A560H5W8_9PROT1.180e-3450.93Nitrite reductase/ring-hydroxylating ferredoxin su... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5311contigP-wetherbeei_contig5311:2083..2424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog402881.Plav_1340
PFAMsRieske
Model size342
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.26e-40
EggNOG OGsCOG2146@1|root,COG2146@2|Bacteria,1N72F@1224|Proteobacteria,2UFDN@28211|Alphaproteobacteria
DescriptionRieske 2Fe-2S
Cds size342
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186795.5125844-CDS-P-wetherbeei_contig5311:2082..24241683186795.5125844-CDS-P-wetherbeei_contig5311:2082..2424Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5311 2083..2424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5311.3.1prot_P-wetherbeei_contig5311.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5311 2083..2424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5311.3.1

>prot_P-wetherbeei_contig5311.3.1 ID=prot_P-wetherbeei_contig5311.3.1|Name=mRNA_P-wetherbeei_contig5311.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
GAPAAGTPLCRLDALPASGTKGFLFGGDVDRFDMFVVWRNGNLNAFVNDC
PHAHTPLDFMPDRFLNLEQSHLLCATHGALFRIQDGHCVAGPCKGKRLTP
VPVKITDGVICIA*
back to top

mRNA from alignment at P-wetherbeei_contig5311:2083..2424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5311.3.1 ID=mRNA_P-wetherbeei_contig5311.3.1|Name=mRNA_P-wetherbeei_contig5311.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig5311:2083..2424- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGCCGGCCGCGGGAACGCCGCTATGCCGTCTGGATGCGCTGCCTGC AAGCGGCACTAAAGGATTTTTGTTTGGCGGGGACGTTGATCGTTTTGACA TGTTCGTGGTGTGGCGGAATGGAAATCTGAACGCCTTTGTCAATGACTGT CCGCATGCGCATACGCCGCTGGATTTCATGCCGGACCGTTTTCTCAATCT GGAGCAATCGCATCTGTTATGCGCCACGCATGGTGCGCTGTTTCGCATTC AGGATGGGCATTGCGTCGCAGGCCCGTGCAAAGGCAAGCGTCTGACCCCC GTGCCGGTGAAAATTACCGATGGCGTCATCTGTATCGCTTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5311:2083..2424-

>mRNA_P-wetherbeei_contig5311.3.1 ID=mRNA_P-wetherbeei_contig5311.3.1|Name=mRNA_P-wetherbeei_contig5311.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig5311:2083..2424- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCGCCGGCCGCGGGAACGCCGCTATGCCGTCTGGATGCGCTGCCTGC
AAGCGGCACTAAAGGATTTTTGTTTGGCGGGGACGTTGATCGTTTTGACA
TGTTCGTGGTGTGGCGGAATGGAAATCTGAACGCCTTTGTCAATGACTGT
CCGCATGCGCATACGCCGCTGGATTTCATGCCGGACCGTTTTCTCAATCT
GGAGCAATCGCATCTGTTATGCGCCACGCATGGTGCGCTGTTTCGCATTC
AGGATGGGCATTGCGTCGCAGGCCCGTGCAAAGGCAAGCGTCTGACCCCC
GTGCCGGTGAAAATTACCGATGGCGTCATCTGTATCGCTTAA
back to top