mRNA_P-wetherbeei_contig53021.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53021.1.1
Unique NamemRNA_P-wetherbeei_contig53021.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: A0A0D7F527_RHOPL (Pyrroloquinoline quinone biosynthesis protein PqqD n=2 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7F527_RHOPL)

HSP 1 Score: 152 bits (384), Expect = 5.390e-46
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 MTTRQRHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPRAGA 309
            MT R RHI+VSE +RP+L RHAKLRFDETR  WV+LAPERVL PD I+VEILQLCDG R VA +ID LAAKYVAPRE IGADVIA+LQDL DKGFLTE R  A
Sbjct:    1 MTLRSRHISVSEISRPILPRHAKLRFDETRQRWVVLAPERVLAPDNIAVEILQLCDGVRSVAQIIDQLAAKYVAPRELIGADVIAMLQDLGDKGFLTEAREPA 103
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: UPI001807057A (Pyrroloquinoline quinone biosynthesis peptide chaperone PqqD n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI001807057A)

HSP 1 Score: 151 bits (382), Expect = 1.020e-45
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:   10 RQRHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPRAGAA 312
            R RH+ VSE +RP+L RHAKLRFDETR+ WVILAPERVL PD+I+VEILQLCDG R+VAA+ID+LAAKYVA RE IGADVIA+LQDL+DKGFLTE R   A
Sbjct:    2 RSRHVTVSEASRPVLPRHAKLRFDETRHRWVILAPERVLAPDDIAVEILQLCDGVRNVAAIIDSLAAKYVAVRELIGADVIAMLQDLADKGFLTEARENTA 102
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: A0A1Q4BRW1_9HYPH (PqqA binding protein n=1 Tax=Rhizobiales bacterium 62-47 TaxID=1895811 RepID=A0A1Q4BRW1_9HYPH)

HSP 1 Score: 147 bits (370), Expect = 7.560e-44
Identity = 73/97 (75.26%), Postives = 84/97 (86.60%), Query Frame = 1 
Query:   10 RQRHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            R RHI+V+E +RPML RHAKL+FDETR  WVILAPERVL PD+I+VEILQLCDG R VA ++D LAAKY APR+AIG DVIA+LQDL+DKGFLTE R
Sbjct:    5 RSRHISVTEASRPMLPRHAKLKFDETRQRWVILAPERVLAPDDIAVEILQLCDGQRGVAQIVDQLAAKYAAPRDAIGTDVIAMLQDLADKGFLTEAR 101
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: PQQD_RHOP2 (PqqA binding protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) TaxID=316058 RepID=PQQD_RHOP2)

HSP 1 Score: 145 bits (367), Expect = 1.980e-43
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            RHI+VSE +RPML RHAKLRFDETR  WVILAPERVL PD+I+VEILQLCDGAR VAA+ID LA KY A R  IGADVIA+LQDL+DKGFLTE R
Sbjct:    4 RHISVSEQSRPMLPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVAAIIDTLALKYTADRAEIGADVIAMLQDLADKGFLTEAR 98
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: A0A4U6RVL1_BRAEL (PqqA binding protein n=44 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A4U6RVL1_BRAEL)

HSP 1 Score: 145 bits (365), Expect = 4.110e-43
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPRAGAA 312
            R+I+VSET+RP L RH KL+FDETR +WVILAPERVL PD+I+VE+LQLCDG R VAAM+D LA KY APREAI  DVIA+LQDL+DKGFLTE R   A
Sbjct:    5 RNISVSETSRPQLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGMRSVAAMVDQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARESTA 103
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: UPI0003F5663B (pyrroloquinoline quinone biosynthesis peptide chaperone PqqD n=1 Tax=Bradyrhizobium sp. Tv2a-2 TaxID=113395 RepID=UPI0003F5663B)

HSP 1 Score: 144 bits (363), Expect = 8.290e-43
Identity = 70/95 (73.68%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            R+I VSE +RP+L RHA+L+FDETR +WVILAPERVL PDEI+VE+L+LCDG R+VAAM+D LAAKY APREAI  DV+A+LQDL+DKGFLTE R
Sbjct:    5 RNITVSEASRPVLPRHARLKFDETRKVWVILAPERVLAPDEIAVEVLKLCDGVRNVAAMVDELAAKYAAPREAIATDVVAMLQDLADKGFLTEAR 99
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: UPI001BA4B001 (pyrroloquinoline quinone biosynthesis peptide chaperone PqqD n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA4B001)

HSP 1 Score: 144 bits (362), Expect = 1.140e-42
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPRAGA 309
            R+I+VSET+RP L RHAKL+FDETR +WVILAPERVL PDEI+VE+L+LCDG R V+ MID LA KY APREAI +DVIA+LQDL+DKGFLTE R  A
Sbjct:    4 RNISVSETSRPRLPRHAKLKFDETRQVWVILAPERVLAPDEIAVEVLKLCDGVRSVSDMIDMLATKYAAPREAISSDVIAMLQDLADKGFLTEARENA 101
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BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: A0A4Q7FQ77_9BRAD (PqqA binding protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A4Q7FQ77_9BRAD)

HSP 1 Score: 143 bits (360), Expect = 2.300e-42
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            R+I VSET+RP L RHAKL+FDETR +WVILAPERVL PDEI+VE+LQLCDG R VA M+D LAAKY APREAI  DVIA+LQDL+DKGFL+E R
Sbjct:    4 RNINVSETSRPKLPRHAKLKFDETRQVWVILAPERVLAPDEIAVEVLQLCDGERSVADMVDQLAAKYAAPREAIATDVIAMLQDLADKGFLSEAR 98
[Close]
BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: A0A525INB6_BRASZ (PqqA binding protein n=3 Tax=root TaxID=1 RepID=A0A525INB6_BRASZ)

HSP 1 Score: 143 bits (360), Expect = 2.370e-42
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            RHI+VSE +RP+L RHAKLRFDETR +WVILAPERVL PDEI+VE+LQLCDG R VA M+D LAAKY A R AI  DV+A+LQDL+DKGFLTE R
Sbjct:    5 RHISVSEASRPVLPRHAKLRFDETRQVWVILAPERVLAPDEIAVEVLQLCDGLRSVADMVDQLAAKYAAERSAIATDVVAMLQDLADKGFLTEAR 99
[Close]
BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Match: UPI00046458DC (pyrroloquinoline quinone biosynthesis peptide chaperone PqqD n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI00046458DC)

HSP 1 Score: 143 bits (360), Expect = 2.370e-42
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:   16 RHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVEILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR 300
            RHI+VSE +RPML RH KL+FDETR +WVILAPERVL PDEI+VE+LQLCDG R VA ++D LAAKY APR  I ADV+A+LQDL+DKGFLTE R
Sbjct:    5 RHISVSEASRPMLPRHTKLKFDETRKVWVILAPERVLAPDEIAVEVLQLCDGVRSVAGIVDDLAAKYAAPRADISADVVAMLQDLADKGFLTEAR 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D7F527_RHOPL5.390e-4676.70Pyrroloquinoline quinone biosynthesis protein PqqD... [more]
UPI001807057A1.020e-4576.24Pyrroloquinoline quinone biosynthesis peptide chap... [more]
A0A1Q4BRW1_9HYPH7.560e-4475.26PqqA binding protein n=1 Tax=Rhizobiales bacterium... [more]
PQQD_RHOP21.980e-4378.95PqqA binding protein n=1 Tax=Rhodopseudomonas palu... [more]
A0A4U6RVL1_BRAEL4.110e-4372.73PqqA binding protein n=44 Tax=Bradyrhizobiaceae Ta... [more]
UPI0003F5663B8.290e-4373.68pyrroloquinoline quinone biosynthesis peptide chap... [more]
UPI001BA4B0011.140e-4273.47pyrroloquinoline quinone biosynthesis peptide chap... [more]
A0A4Q7FQ77_9BRAD2.300e-4275.79PqqA binding protein n=3 Tax=Bradyrhizobium TaxID=... [more]
A0A525INB6_BRASZ2.370e-4274.74PqqA binding protein n=3 Tax=root TaxID=1 RepID=A0... [more]
UPI00046458DC2.370e-4273.68pyrroloquinoline quinone biosynthesis peptide chap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53021contigP-wetherbeei_contig53021:101..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog316058.RPB_3420
Preferred namepqqD
PFAMsPqqD
Model size315
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06138
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.24e-44
EggNOG OGsCOG0535@1|root,COG0535@2|Bacteria,1N7TR@1224|Proteobacteria,2UFAS@28211|Alphaproteobacteria,3JZD3@41294|Bradyrhizobiaceae
Descriptionpeptidyl-tyrosine modification
Cds size315
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.4149265-CDS-P-wetherbeei_contig53021:100..4151683186794.4149265-CDS-P-wetherbeei_contig53021:100..415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53021 101..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53021.1.1prot_P-wetherbeei_contig53021.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53021 101..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53021.1.1

>prot_P-wetherbeei_contig53021.1.1 ID=prot_P-wetherbeei_contig53021.1.1|Name=mRNA_P-wetherbeei_contig53021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MTTRQRHIAVSETTRPMLARHAKLRFDETRNLWVILAPERVLMPDEISVE
ILQLCDGARDVAAMIDALAAKYVAPREAIGADVIALLQDLSDKGFLTEPR
AGAA*
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mRNA from alignment at P-wetherbeei_contig53021:101..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53021.1.1 ID=mRNA_P-wetherbeei_contig53021.1.1|Name=mRNA_P-wetherbeei_contig53021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig53021:101..415- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCAGGCAGCGCCATATCGCCGTCAGCGAGACTACCCGCCCGAT
GCTGGCGCGGCACGCCAAGCTGCGCTTCGACGAGACGCGGAATCTCTGGG
TGATCCTGGCGCCGGAGCGCGTATTGATGCCGGACGAGATCTCGGTCGAG
ATCCTGCAGCTCTGCGACGGCGCTCGCGATGTGGCGGCGATGATCGACGC
ACTGGCGGCGAAGTACGTCGCGCCGCGCGAGGCGATCGGCGCCGACGTGA
TCGCGCTGCTGCAGGATCTGTCCGACAAGGGATTTTTGACCGAACCGCGC
GCGGGGGCGGCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53021:101..415-

>mRNA_P-wetherbeei_contig53021.1.1 ID=mRNA_P-wetherbeei_contig53021.1.1|Name=mRNA_P-wetherbeei_contig53021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig53021:101..415- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACCAGGCAGCGCCATATCGCCGTCAGCGAGACTACCCGCCCGAT
GCTGGCGCGGCACGCCAAGCTGCGCTTCGACGAGACGCGGAATCTCTGGG
TGATCCTGGCGCCGGAGCGCGTATTGATGCCGGACGAGATCTCGGTCGAG
ATCCTGCAGCTCTGCGACGGCGCTCGCGATGTGGCGGCGATGATCGACGC
ACTGGCGGCGAAGTACGTCGCGCCGCGCGAGGCGATCGGCGCCGACGTGA
TCGCGCTGCTGCAGGATCTGTCCGACAAGGGATTTTTGACCGAACCGCGC
GCGGGGGCGGCATGA
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