mRNA_P-wetherbeei_contig53005.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53005.2.1
Unique NamemRNA_P-wetherbeei_contig53005.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: B9TB85_RICCO (HHH_8 domain-containing protein (Fragment) n=1 Tax=Ricinus communis TaxID=3988 RepID=B9TB85_RICCO)

HSP 1 Score: 63.9 bits (154), Expect = 7.540e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 REAARDEPMPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            R A R E MP HNADIA+ FNE+ADLLE++ DN FR+RAYRNAAR
Sbjct:    3 RRAHRAEQMPIHNADIAEIFNEIADLLEIQGDNPFRVRAYRNAAR 47
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A1F4FFQ6_9PROT (DNA polymerase beta n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FFQ6_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA AF+E+ADLLELR +N FR+RAYRNAAR
Sbjct:    1 MPVHNADIARAFDEIADLLELRDENPFRVRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A521Z397_9PROT (DNA polymerase beta n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521Z397_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA AF+E+ADLLELR +N FR+RAYRNAAR
Sbjct:    1 MPVHNADIARAFDEIADLLELRDENPFRVRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: UPI0004734C94 (DNA polymerase/3'-5' exonuclease PolX n=1 Tax=Herminiimonas sp. CN TaxID=1349818 RepID=UPI0004734C94)

HSP 1 Score: 59.3 bits (142), Expect = 4.460e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA  F+E+ADLLE+R DN FRIRAYRNAAR
Sbjct:    1 MPLHNADIAAIFDEIADLLEIRDDNPFRIRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A1J5QFI1_9ZZZZ (DNA polymerase beta n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5QFI1_9ZZZZ)

HSP 1 Score: 59.3 bits (142), Expect = 4.460e-9
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA AF EMADLLE+ Q N FRIRAYRNAAR
Sbjct:    1 MPIHNADIAAAFTEMADLLEIEQANPFRIRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A1F4DGH8_9PROT (DNA polymerase beta n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DGH8_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 8.330e-9
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA  F E+ADLLE+R DN FRIRAYRNAAR
Sbjct:    1 MPIHNADIAAVFEEIADLLEIRGDNPFRIRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A1F4DRC1_9PROT (DNA polymerase beta n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DRC1_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-8
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIA  F E+ADLLE+R +N FRIRAYRNAAR
Sbjct:    1 MPIHNADIAAVFEEIADLLEIRDENPFRIRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A0A6Q9B3_9BURK (DNA-directed DNA polymerase n=1 Tax=Paraburkholderia sacchari TaxID=159450 RepID=A0A0A6Q9B3_9BURK)

HSP 1 Score: 57.4 bits (137), Expect = 2.130e-8
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNAD+A+ FNE+ADLLE++  N FR+RAYRNAAR
Sbjct:    1 MPIHNADVAEVFNEIADLLEIQGGNPFRVRAYRNAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A5C6V4Y0_9BURK (DNA-directed DNA polymerase n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A5C6V4Y0_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR 135
            MP HNADIAD FNE+ADLLE++  N FR+RAYR AAR
Sbjct:    1 MPIHNADIADVFNEIADLLEIQGGNPFRVRAYRRAAR 37
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BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Match: A0A1F4F3E5_9PROT (DNA polymerase beta n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F3E5_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.780e-8
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   25 MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAA 132
            MP HNADIA  F E+ADLLELR +N FR+RAYRNAA
Sbjct:    1 MPVHNADIARIFEEIADLLELRDENPFRVRAYRNAA 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53005.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B9TB85_RICCO7.540e-1271.11HHH_8 domain-containing protein (Fragment) n=1 Tax... [more]
A0A1F4FFQ6_9PROT1.740e-978.38DNA polymerase beta n=1 Tax=Betaproteobacteria bac... [more]
A0A521Z397_9PROT1.740e-978.38DNA polymerase beta n=1 Tax=Betaproteobacteria bac... [more]
UPI0004734C944.460e-978.38DNA polymerase/3'-5' exonuclease PolX n=1 Tax=Herm... [more]
A0A1J5QFI1_9ZZZZ4.460e-981.08DNA polymerase beta n=1 Tax=mine drainage metageno... [more]
A0A1F4DGH8_9PROT8.330e-978.38DNA polymerase beta n=1 Tax=Betaproteobacteria bac... [more]
A0A1F4DRC1_9PROT1.560e-875.68DNA polymerase beta n=1 Tax=Betaproteobacteria bac... [more]
A0A0A6Q9B3_9BURK2.130e-870.27DNA-directed DNA polymerase n=1 Tax=Paraburkholder... [more]
A0A5C6V4Y0_9BURK2.910e-872.97DNA-directed DNA polymerase n=2 Tax=Burkholderiace... [more]
A0A1F4F3E5_9PROT3.780e-875.00DNA polymerase beta n=1 Tax=Betaproteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53005contigP-wetherbeei_contig53005:406..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159450.NH14_17795
PFAMsDNA_pol_B_palm,DNA_pol_B_thumb,HHH_5,HHH_8,PHP
Model size135
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02347
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.77e-09
EggNOG OGsCOG1387@1|root,COG1387@2|Bacteria,1MYXV@1224|Proteobacteria,2VJIQ@28216|Betaproteobacteria,1K4RW@119060|Burkholderiaceae
DescriptionDNA polymerase
Cds size111
COG categoryL
BRITEko00000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.2122695-UTR-P-wetherbeei_contig53005:405..4291683186794.2122695-UTR-P-wetherbeei_contig53005:405..429Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig53005 406..429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.2213225-CDS-P-wetherbeei_contig53005:429..5401683186794.2213225-CDS-P-wetherbeei_contig53005:429..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53005 430..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53005.2.1prot_P-wetherbeei_contig53005.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53005 430..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53005.2.1

>prot_P-wetherbeei_contig53005.2.1 ID=prot_P-wetherbeei_contig53005.2.1|Name=mRNA_P-wetherbeei_contig53005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=37bp
MPAHNADIADAFNEMADLLELRQDNRFRIRAYRNAAR
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mRNA from alignment at P-wetherbeei_contig53005:406..540+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53005.2.1 ID=mRNA_P-wetherbeei_contig53005.2.1|Name=mRNA_P-wetherbeei_contig53005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig53005:406..540+ (Phaeothamnion wetherbeei SAG_119_79)
AGAGAGGCTGCGCGGGATGAGCCGATGCCTGCCCACAATGCGGACATCGC
CGACGCGTTCAACGAGATGGCCGATCTGCTTGAATTGCGACAGGACAACC
GGTTCCGGATCCGCGCCTATCGCAACGCCGCACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53005:406..540+

>mRNA_P-wetherbeei_contig53005.2.1 ID=mRNA_P-wetherbeei_contig53005.2.1|Name=mRNA_P-wetherbeei_contig53005.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=111bp|location=Sequence derived from alignment at P-wetherbeei_contig53005:406..540+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCCCACAATGCGGACATCGCCGACGCGTTCAACGAGATGGCCGA
TCTGCTTGAATTGCGACAGGACAACCGGTTCCGGATCCGCGCCTATCGCA
ACGCCGCACGG
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