mRNA_P-wetherbeei_contig52989.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52989.1.1
Unique NamemRNA_P-wetherbeei_contig52989.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Match: A0A838GCV6_9CHLR (Metal-dependent hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GCV6_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-16
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    4 ACFLAGVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDRIVFLASLAALGLTAVAF 201
            A    G+ SHL SDA T  GIRPLLPFSQWKVWLLP+ LRSR DG+LD +V + +L  L    V +
Sbjct:   93 AALALGIGSHLGSDACTFAGIRPLLPFSQWKVWLLPRFLRSRSDGYLDTVVRVLALVTLAFGFVVY 158
[Close]
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Match: A0A7V9VIU8_9CHLR (Metal-dependent hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VIU8_9CHLR)

HSP 1 Score: 74.7 bits (182), Expect = 4.780e-15
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   10 FLAGVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDRIVFLASLAALGLTAV 195
            F  G+++HL +DA T  GIRPLLPFS+W++W+LP+ LR R DGWL+ I    S A LG   +
Sbjct:  106 FGLGLVTHLLADACTHAGIRPLLPFSRWRMWVLPRMLRGRSDGWLNTIALGVSFAVLGYVMI 167
[Close]
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Match: A0A7V8X4E3_9CHLR (Metal-dependent hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8X4E3_9CHLR)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-13
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   10 FLAGVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDRIVFLASLAALGLTAVAFLANR 213
            F  G  +HL  DA T  G+RPLLP S+W++W+LP+ LR R DGWL+ I    S A LG   +  +A  
Sbjct:  103 FGLGQATHLIGDACTHAGVRPLLPLSRWRMWVLPRMLRGRSDGWLNTIALGVSFAVLGFVVIFAIARE 170
[Close]
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Match: A0A7W0PPE2_9CHLR (Metal-dependent hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0PPE2_9CHLR)

HSP 1 Score: 67.4 bits (163), Expect = 3.110e-12
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   19 GVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDRIVFLASLAALGLTAVAFLANRLA 219
            G+ SHLA+DA T  GIRP LP S+  +WLLP+ +RSR+DG+L+ +  +A++ AL    V F +  +A
Sbjct:  107 GIASHLAADACTYAGIRPFLPLSKRTIWLLPRFMRSRYDGYLNTVFRIAAVMALAFGVVVFASRWIA 173
[Close]
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Match: A0A7V8WSN8_9CHLR (Metal-dependent hydrolase (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WSN8_9CHLR)

HSP 1 Score: 63.9 bits (154), Expect = 4.650e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 SACFLAGVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDRI 153
            SA F  G  SHL  D+ T+ GIRPLLPFS  + W+LP+ LR+R DG+ DRI
Sbjct:  104 SATFALGFASHLIGDSCTRAGIRPLLPFSAARFWVLPRGLRTRSDGFADRI 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52989.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A838GCV6_9CHLR1.700e-1657.58Metal-dependent hydrolase n=1 Tax=Chloroflexia bac... [more]
A0A7V9VIU8_9CHLR4.780e-1551.61Metal-dependent hydrolase n=1 Tax=Chloroflexia bac... [more]
A0A7V8X4E3_9CHLR1.400e-1345.59Metal-dependent hydrolase n=1 Tax=Chloroflexia bac... [more]
A0A7W0PPE2_9CHLR3.110e-1246.27Metal-dependent hydrolase n=1 Tax=Chloroflexia bac... [more]
A0A7V8WSN8_9CHLR4.650e-1156.86Metal-dependent hydrolase (Fragment) n=1 Tax=Chlor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52989contigP-wetherbeei_contig52989:316..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size222
Hectar predicted targeting categorysignal anchor
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.6312935-CDS-P-wetherbeei_contig52989:315..5371683186793.6312935-CDS-P-wetherbeei_contig52989:315..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52989 316..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52989.1.1prot_P-wetherbeei_contig52989.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52989 316..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52989.1.1

>prot_P-wetherbeei_contig52989.1.1 ID=prot_P-wetherbeei_contig52989.1.1|Name=mRNA_P-wetherbeei_contig52989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
SACFLAGVLSHLASDAYTKGGIRPLLPFSQWKVWLLPKPLRSRHDGWLDR
IVFLASLAALGLTAVAFLANRLA*
back to top

mRNA from alignment at P-wetherbeei_contig52989:316..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52989.1.1 ID=mRNA_P-wetherbeei_contig52989.1.1|Name=mRNA_P-wetherbeei_contig52989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig52989:316..537- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCTGCTTCCTCGCCGGGGTGCTGAGTCATCTGGCGAGCGACGCCTA
CACCAAGGGTGGCATCCGCCCCCTGCTGCCCTTCTCCCAATGGAAGGTCT
GGCTGCTGCCGAAACCGCTCCGCAGCCGGCACGACGGCTGGCTGGACCGG
ATCGTCTTCCTCGCGAGCCTCGCCGCCCTCGGCCTGACGGCGGTCGCATT
CCTCGCCAACCGCCTCGCCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52989:316..537-

>mRNA_P-wetherbeei_contig52989.1.1 ID=mRNA_P-wetherbeei_contig52989.1.1|Name=mRNA_P-wetherbeei_contig52989.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig52989:316..537- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCTGCTTCCTCGCCGGGGTGCTGAGTCATCTGGCGAGCGACGCCTA
CACCAAGGGTGGCATCCGCCCCCTGCTGCCCTTCTCCCAATGGAAGGTCT
GGCTGCTGCCGAAACCGCTCCGCAGCCGGCACGACGGCTGGCTGGACCGG
ATCGTCTTCCTCGCGAGCCTCGCCGCCCTCGGCCTGACGGCGGTCGCATT
CCTCGCCAACCGCCTCGCCTGA
back to top