mRNA_P-wetherbeei_contig52978.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52978.1.1
Unique NamemRNA_P-wetherbeei_contig52978.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A7Y3GUU6_9DELT (DMT family transporter n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GUU6_9DELT)

HSP 1 Score: 196 bits (497), Expect = 3.310e-59
Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = 1
Query:    1 KQFVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            + F  IPRRHW RF ALGA+G+LLHNGL++KGLE+T A T SI++ LI+  V++L+ +++RR PDR+ V+GV L F GTA+VL  G  +++F++ +G GE L FLSAL+W  YS+LG  LLEE+SPLLVT  A   G  +L PF++ +   + A+ SD+RA LL+F LG +GSA+GFLWY
Sbjct:   53 RSFAPIPRRHWLRFLALGATGMLLHNGLMFKGLEFTDAMTTSIILGLIAAMVLLLEAVVHRRRPDRVAVVGVLLGFAGTAYVLAGGRPTEIFSLRLGLGEGLIFLSALSWAAYSVLGGRLLEEFSPLLVTAVAIWVGTGLLFPFVFENPAGSWALASDSRAWLLIFLLGFVGSALGFLWY 232          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A1Z9U910_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9U910_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 1.400e-56
Identity = 91/180 (50.56%), Postives = 131/180 (72.78%), Query Frame = 1
Query:    1 KQFVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            + F ++P+  WW+F  LG +GILLHNGLLY+GLE  +A+ ASI+++LI++QV ILD ++ +R+P+ LT++GV   F+G  +V+TDG L  L  I    GE+L F S L+W +YS++G+DLL  Y P+LVTTYAAL GL  L PF   DT  TIA++S+ +++ L+FFLG  GSA+ F+WY
Sbjct:   53 RHFKKVPKVLWWKFLILGITGILLHNGLLYEGLESVTASHASILLALIAVQVTILDAIVSKRLPNTLTMVGVFFGFIGVVYVITDGDLYLLREIVFRRGEILVFCSGLSWAIYSVVGKDLLRRYPPILVTTYAALVGLIFLFPFAVTDTAKTIAIYSEPKSIGLIFFLGSFGSALAFVWY 232          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A661Q361_9DELT (EamA family transporter n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661Q361_9DELT)

HSP 1 Score: 112 bits (279), Expect = 9.630e-27
Identity = 58/180 (32.22%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 KQFVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            K+   +PR  W     LG SG+  +N L ++GL+   A  A+++++   I + I   L++    +RL ++G+ LS  G   V+T GH + +   G+G G++  F   + W  YSL+GR  +   SPL   TY+AL G  +L P   ++   +        A L +F+LGL G+ +GF+WY
Sbjct:   60 KKLPPVPREQWLPLLLLGLSGVFAYNVLFFRGLQLIEAGRAAVIIANNPIVIAIFAALLFGEKLNRLKILGIVLSVSGAIVVITQGHPTTILTSGIGEGDLYIFGCVICWVTYSLVGRAAMRSLSPLTAVTYSALIGTLLLFPAACLEGMFSQIAAYSLTAWLSLFYLGLCGTVLGFVWY 239          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A1Z8WQX8_9GAMM (Uncharacterized protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WQX8_9GAMM)

HSP 1 Score: 107 bits (267), Expect = 6.180e-25
Identity = 55/175 (31.43%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   16 IPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            + ++ +++   LG  G ++HN L++ GLE+T+AT  +++   I I V+ LD L++R+      ++G  +SFVG   V+T+G L ++   G+G GE L  ++ + W  YS++ + LLE+  P+ VT +  L G  +L+PFL  + + ++ + ++   L+++   G++   +GFLWY
Sbjct:   65 LNKKIFYQLITLGFCGFVVHNYLMFIGLEFTTATKGALINGAIPIVVMGLDFLLFRKTIRPGMLVGSLISFVGVLLVITEGKLVEVMESGIGIGETLFLVAIVGWGFYSIIAKPLLEKNPPIWVTAFPCLFGGILLMPFLAHNIENSLIMLANRHVLVVLLIQGILAMGLGFLWY 239          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A1J5I431_9DELT (EamA family transporter n=2 Tax=unclassified Syntrophobacteraceae TaxID=869804 RepID=A0A1J5I431_9DELT)

HSP 1 Score: 104 bits (260), Expect = 6.170e-24
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 1
Query:    7 FVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            F ++PRR W     LG SG+  +N   + GLE  +A  AS++++   + + +L   ++R     L + G+ LS  G   V++ G  + +F  GVG GE   F    +W  YSL+G+  + + SPL   TY+ L G+  L P  + +  A       A   L + +LGL GSAIGF+WY
Sbjct:   63 FPKLPRRQWLPVLLLGLSGVFFYNYFFFAGLETITAGRASLIIATNPVVIAVLAAALFREPLHPLKLAGIFLSMSGAMVVISRGDPTAMFHGGVGLGEFYIFGCVASWVAYSLIGKIAMRDLSPLAAVTYSCLVGMFCLAPPAFAEGLAGALTAYGAATWLGLLYLGLFGSAIGFIWY 240          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: UPI0002DA56DC (DMT family transporter n=1 Tax=Spirulina subsalsa TaxID=54311 RepID=UPI0002DA56DC)

HSP 1 Score: 103 bits (256), Expect = 1.910e-23
Identity = 61/184 (33.15%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   13 RIPRRHWWRF---AALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPF-----LWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            + PR  W +      LG +G+  +N   + GL+ T A+ AS++++L  I V +   +  R     L ++G+ LSF G AF++  G+   LF  G+G G++  F   ++W +YS++G+ ++++ SPL+ TTYA   G   LLP      LW +    +A+       L + +LG+ GSAIGF WY
Sbjct:   54 KFPRVRWSQMIGLVVLGLTGVFAYNTFFFWGLQTTPASRASLIIALNPIAVALASAIFLRYRLSSLQIVGILLSFSGAAFIIAQGNPLHLFREGIGTGDLWLFGCVISWCIYSIVGKWVMQDLSPLVATTYACFIGTLALLPLALHRGLW-EILPDLAL----NHWLSLIYLGVFGSAIGFNWY 232          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A3A4S1V5_9DELT (EamA family transporter n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4S1V5_9DELT)

HSP 1 Score: 102 bits (255), Expect = 3.250e-23
Identity = 62/181 (34.25%), Postives = 103/181 (56.91%), Query Frame = 1
Query:    4 QFVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARAL--LLMFFLGLIGSAIGFLWY 540
            +F RI  R  +    LG +GI L+N   + GL+   A  A+++++   I + +   L+++     L +IG+ LS  G   V++ G+LS +F+ G+G GEV  F   L+WT +SL+G+ ++   SPL+  TYA++AG+A L  F+   T+  I        L    + +LGL G+A+GF+WY
Sbjct:   55 KFPRIRPRQIFSVILLGLTGIFLYNVCFFYGLKIIPAGRAALIIATNPIAISLFSALLFQEKLTPLKIIGILLSTTGAVIVISKGNLSTVFSHGLGWGEVFIFGCVLSWTAFSLIGKTVITHLSPLVTITYASVAGMACL--FIPALTEGMIHSIPSFTVLDWFCIVYLGLFGTAVGFVWY 233          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A081C3N6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Vecturithrix granuli TaxID=1499967 RepID=A0A081C3N6_9BACT)

HSP 1 Score: 102 bits (253), Expect = 6.800e-23
Identity = 57/178 (32.02%), Postives = 95/178 (53.37%), Query Frame = 1
Query:    7 FVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            F R+ +R       LG +G+  +N   + GL+   A  AS++V+   I + +L    +      L ++G+ LS  G   V+T GH  ++F  G+G GE+L F   ++W  YSL+G+ ++++ SPL+  TY+ L G A+L    ++       V     A L +FFLG  G+ +GFLW+
Sbjct:   62 FPRVQKRQLLPLLLLGMTGVFAYNFFFFTGLQLIEAGRASVIVANNPIFIALLSAYFFHEKLTPLKILGILLSVTGAVVVITRGHPLEIFQGGIGAGELLIFGCVVSWVTYSLIGKVVMKDLSPLISVTYSVLIGAALLFIPAYMQGLTRQIVTYPISAWLGLFFLGFFGTVLGFLWF 239          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A345Y3P0_9NEIS (DMT family transporter n=4 Tax=Crenobacter cavernae TaxID=2290923 RepID=A0A345Y3P0_9NEIS)

HSP 1 Score: 101 bits (252), Expect = 8.590e-23
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = 1
Query:   46 ALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLP-FLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            ALG +G+  +N   + GLE   A+ A+++V+L  + V +  T +Y +    +   GVA+S  G A V++ G L++L +  VG GE++ F S+LAW+ Y+LLGR+  + +SPL  TT+AALAG  MLLP  LW            A  L L+  LGL+ + + FLWY
Sbjct:   75 ALGFTGVFAYNICFFFGLERVPASRAALIVALNPVLVALAATAVYGQRLSLVRWGGVAVSLFGAALVISRGELNELVS-HVGAGELIVFGSSLAWSAYTLLGRNAAQHFSPLASTTWAALAGALMLLPPALWEGRMIATLTLGPAMWLALLH-LGLLATVVAFLWY 238          
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Match: A0A6H2NGU0_9CYAN (DMT family transporter n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NGU0_9CYAN)

HSP 1 Score: 100 bits (249), Expect = 2.010e-22
Identity = 58/174 (33.33%), Postives = 96/174 (55.17%), Query Frame = 1
Query:   19 PRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISIQVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGEVLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQATIAVFSDARALLLMFFLGLIGSAIGFLWY 540
            PRR W   A LG +GI  +N   + GL+   A  A+++++L  + + +   L+++   +R  ++G++LS +G A V++ G+   L    VG GE+L     ++W  Y+LLG+ ++ E SP   TTYA L G  +LL     D    +   S A     + +LG++GSA+GF WY
Sbjct:   59 PRRLWLPIALLGLTGIFAYNVFFFSGLKTVEAGRAALIIALNPVAIALGAALVFKDPLNRTRLLGISLSLLGAAVVISGGNPMDLLRGNVGVGELLLLGCVVSWMSYTLLGKVVMAELSPFATTTYACLTGAVLLLGPALADGLPDLLSGSSAVTWGGLIYLGVLGSAVGFSWY 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52978.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y3GUU6_9DELT3.310e-5953.89DMT family transporter n=1 Tax=Myxococcales bacter... [more]
A0A1Z9U910_9GAMM1.400e-5650.56Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A661Q361_9DELT9.630e-2732.22EamA family transporter n=1 Tax=Deltaproteobacteri... [more]
A0A1Z8WQX8_9GAMM6.180e-2531.43Uncharacterized protein n=1 Tax=Methylococcaceae b... [more]
A0A1J5I431_9DELT6.170e-2433.71EamA family transporter n=2 Tax=unclassified Syntr... [more]
UPI0002DA56DC1.910e-2333.15DMT family transporter n=1 Tax=Spirulina subsalsa ... [more]
A0A3A4S1V5_9DELT3.250e-2334.25EamA family transporter n=1 Tax=Desulfobacteraceae... [more]
A0A081C3N6_9BACT6.800e-2332.02Uncharacterized protein n=1 Tax=Candidatus Vecturi... [more]
A0A345Y3P0_9NEIS8.590e-2339.16DMT family transporter n=4 Tax=Crenobacter caverna... [more]
A0A6H2NGU0_9CYAN2.010e-2233.33DMT family transporter n=1 Tax=Leptolyngbya sp. LC... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52978contigP-wetherbeei_contig52978:1..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1173029.JH980292_gene3496
PFAMsEamA
Model size540
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.13e-24
EggNOG OGsCOG0697@1|root,COG0697@2|Bacteria,1G08M@1117|Cyanobacteria,1H9YW@1150|Oscillatoriales
DescriptionEamA-like transporter family
Cds size540
COG categoryEG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.5453048-CDS-P-wetherbeei_contig52978:0..5401683186793.5453048-CDS-P-wetherbeei_contig52978:0..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52978 1..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52978.1.1prot_P-wetherbeei_contig52978.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52978 1..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52978.1.1

>prot_P-wetherbeei_contig52978.1.1 ID=prot_P-wetherbeei_contig52978.1.1|Name=mRNA_P-wetherbeei_contig52978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
KQFVRIPRRHWWRFAALGASGILLHNGLLYKGLEYTSATTASIVVSLISI
QVVILDTLIYRRMPDRLTVIGVALSFVGTAFVLTDGHLSQLFAIGVGPGE
VLAFLSALAWTVYSLLGRDLLEEYSPLLVTTYAALAGLAMLLPFLWVDTQ
ATIAVFSDARALLLMFFLGLIGSAIGFLWY
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mRNA from alignment at P-wetherbeei_contig52978:1..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52978.1.1 ID=mRNA_P-wetherbeei_contig52978.1.1|Name=mRNA_P-wetherbeei_contig52978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52978:1..540- (Phaeothamnion wetherbeei SAG_119_79)
AAACAATTCGTGCGCATTCCGCGCCGCCACTGGTGGCGTTTCGCAGCGCT GGGCGCGAGCGGCATCCTGCTGCACAACGGGCTGTTGTACAAAGGTCTGG AATACACCAGCGCCACCACCGCATCCATCGTCGTGTCGCTGATCTCCATC CAGGTGGTGATCCTCGACACCCTTATCTATCGACGCATGCCCGATAGATT GACCGTCATCGGTGTGGCTTTAAGTTTCGTCGGCACCGCGTTCGTGCTGA CCGATGGCCATCTCAGTCAGTTGTTTGCGATTGGCGTCGGGCCTGGCGAA GTGCTGGCCTTTCTGTCGGCGCTGGCGTGGACGGTGTATTCGCTGCTGGG GCGCGACCTGTTGGAAGAGTATTCACCCTTGCTGGTGACCACCTATGCGG CCCTGGCAGGACTCGCAATGTTATTGCCGTTTTTGTGGGTCGACACCCAG GCGACCATCGCGGTGTTCAGTGACGCGCGCGCCTTGCTGTTGATGTTCTT CTTAGGGCTCATCGGCTCGGCTATCGGCTTTCTATGGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52978:1..540-

>mRNA_P-wetherbeei_contig52978.1.1 ID=mRNA_P-wetherbeei_contig52978.1.1|Name=mRNA_P-wetherbeei_contig52978.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52978:1..540- (Phaeothamnion wetherbeei SAG_119_79)
AAACAATTCGTGCGCATTCCGCGCCGCCACTGGTGGCGTTTCGCAGCGCT
GGGCGCGAGCGGCATCCTGCTGCACAACGGGCTGTTGTACAAAGGTCTGG
AATACACCAGCGCCACCACCGCATCCATCGTCGTGTCGCTGATCTCCATC
CAGGTGGTGATCCTCGACACCCTTATCTATCGACGCATGCCCGATAGATT
GACCGTCATCGGTGTGGCTTTAAGTTTCGTCGGCACCGCGTTCGTGCTGA
CCGATGGCCATCTCAGTCAGTTGTTTGCGATTGGCGTCGGGCCTGGCGAA
GTGCTGGCCTTTCTGTCGGCGCTGGCGTGGACGGTGTATTCGCTGCTGGG
GCGCGACCTGTTGGAAGAGTATTCACCCTTGCTGGTGACCACCTATGCGG
CCCTGGCAGGACTCGCAATGTTATTGCCGTTTTTGTGGGTCGACACCCAG
GCGACCATCGCGGTGTTCAGTGACGCGCGCGCCTTGCTGTTGATGTTCTT
CTTAGGGCTCATCGGCTCGGCTATCGGCTTTCTATGGTAT
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