mRNA_P-wetherbeei_contig52925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52925.1.1
Unique NamemRNA_P-wetherbeei_contig52925.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52925.1.1 vs. uniprot
Match: W3RH21_9BRAD (Uncharacterized protein n=2 Tax=Afipia sp. P52-10 TaxID=1429916 RepID=W3RH21_9BRAD)

HSP 1 Score: 68.6 bits (166), Expect = 5.560e-11
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:   49 EAASERPAVADGVSDRPSAPASP--------PPWADEIATRAKPXXXXXXXXXIELRDVAPAPAP-DRPARRNLLFAAKRRDTAEPASPAAVPPLSTTALEAEPKVSFENAWPNPLR 372
            EA S  P VA+     PSA ASP        P W DE+A R++               VAP+PA  DRP RRNLLF+ +RR+  +        PL+T+ALE+EP+ SF++AWP+P R
Sbjct:   84 EAGSFAPPVAEPTF--PSATASPAASQEAGAPSWTDEMAARSRDLPQETAHVSNPAEPVAPSPAASDRPGRRNLLFSTRRREKPDT-------PLATSALESEPRTSFDSAWPSPSR 191
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W3RH21_9BRAD5.560e-1141.88Uncharacterized protein n=2 Tax=Afipia sp. P52-10 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52925contigP-wetherbeei_contig52925:67..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1429916.X566_15770
Model size444
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.11e-12
EggNOG OGs2E7KS@1|root,3322S@2|Bacteria,1PBYA@1224|Proteobacteria,2U1J9@28211|Alphaproteobacteria,3JTUG@41294|Bradyrhizobiaceae
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.015673-CDS-P-wetherbeei_contig52925:66..5101683186793.015673-CDS-P-wetherbeei_contig52925:66..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52925 67..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52925.1.1prot_P-wetherbeei_contig52925.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52925 67..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52925.1.1

>prot_P-wetherbeei_contig52925.1.1 ID=prot_P-wetherbeei_contig52925.1.1|Name=mRNA_P-wetherbeei_contig52925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
APKPSAPASPFAVAIGEAASERPAVADGVSDRPSAPASPPPWADEIATRA
KPRPSAPEIPPIELRDVAPAPAPDRPARRNLLFAAKRRDTAEPASPAAVP
PLSTTALEAEPKVSFENAWPNPLRPIGAADRSETKSAATSAEATTPYP
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mRNA from alignment at P-wetherbeei_contig52925:67..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52925.1.1 ID=mRNA_P-wetherbeei_contig52925.1.1|Name=mRNA_P-wetherbeei_contig52925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52925:67..510+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCAAAACCTTCGGCACCTGCGAGCCCGTTTGCCGTTGCGATCGGAGA
GGCGGCCTCGGAGCGACCGGCTGTTGCCGATGGCGTTTCGGATCGGCCGA
GCGCTCCGGCCTCGCCGCCACCATGGGCCGATGAAATCGCCACGCGCGCC
AAACCGCGTCCATCTGCTCCGGAGATTCCACCGATTGAGCTTCGCGACGT
GGCGCCTGCGCCCGCGCCAGATCGTCCGGCGCGCCGCAATCTGCTTTTCG
CGGCCAAGCGGCGCGACACTGCCGAACCCGCATCGCCGGCTGCCGTGCCG
CCGCTATCGACCACGGCGCTGGAAGCAGAGCCGAAGGTTTCGTTCGAGAA
CGCCTGGCCGAATCCATTGCGGCCGATCGGCGCGGCGGATCGCAGCGAAA
CGAAGTCTGCAGCAACAAGCGCCGAAGCAACGACCCCCTACCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52925:67..510+

>mRNA_P-wetherbeei_contig52925.1.1 ID=mRNA_P-wetherbeei_contig52925.1.1|Name=mRNA_P-wetherbeei_contig52925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig52925:67..510+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCAAAACCTTCGGCACCTGCGAGCCCGTTTGCCGTTGCGATCGGAGA
GGCGGCCTCGGAGCGACCGGCTGTTGCCGATGGCGTTTCGGATCGGCCGA
GCGCTCCGGCCTCGCCGCCACCATGGGCCGATGAAATCGCCACGCGCGCC
AAACCGCGTCCATCTGCTCCGGAGATTCCACCGATTGAGCTTCGCGACGT
GGCGCCTGCGCCCGCGCCAGATCGTCCGGCGCGCCGCAATCTGCTTTTCG
CGGCCAAGCGGCGCGACACTGCCGAACCCGCATCGCCGGCTGCCGTGCCG
CCGCTATCGACCACGGCGCTGGAAGCAGAGCCGAAGGTTTCGTTCGAGAA
CGCCTGGCCGAATCCATTGCGGCCGATCGGCGCGGCGGATCGCAGCGAAA
CGAAGTCTGCAGCAACAAGCGCCGAAGCAACGACCCCCTACCCA
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