mRNA_P-wetherbeei_contig52869.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig52869.1.1
Unique Name	mRNA_P-wetherbeei_contig52869.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001E63DE17 (hypothetical protein n=1 Tax=Nocardioides furvisabuli TaxID=375542 RepID=UPI001E63DE17)

HSP 1 Score: 184 bits (467), Expect = 2.220e-57
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LEAGAEAGADA GPAALLASIRSRK+AEDQAAADVL+LAARWADLHPPESIHSAA+FTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:    1 MIEALEAGAEAGADALGPAALLASIRSRKAAEDQAAADVLELAARWADLHPPESIHSAATFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 100

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: A0A6J7JNC4_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J7JNC4_9ZZZZ)

HSP 1 Score: 184 bits (466), Expect = 7.810e-54
Identity = 95/110 (86.36%), Postives = 100/110 (90.91%), Query Frame = 1

Query:    4 LSDPMSRVERMIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            +SDP  R+ERMIE LE   EAGAD  G AALLASIRSR++AEDQAAADVLDLAARWADLHPPESIHSAA+FTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITS SAK
Sbjct:    1 MSDPFPRLERMIEGLEVEPEAGADVLGAAALLASIRSRRAAEDQAAADVLDLAARWADLHPPESIHSAATFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSASAK 110

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001AFAB8D3 (DUF222 domain-containing protein n=8 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001AFAB8D3)

HSP 1 Score: 184 bits (467), Expect = 2.260e-53
Identity = 95/111 (85.59%), Postives = 101/111 (90.99%), Query Frame = 1

Query:    1 PLSDPMSRVERMIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            PLSDP SR+ERMIE LE G+EAGADA GPAALLASIR+ ++ E+  AA  LDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:   78 PLSDPSSRIERMIEELEGGSEAGADALGPAALLASIRASRAIENTEAARQLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 188

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001AF21EF2 (DUF222 domain-containing protein n=2 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001AF21EF2)

HSP 1 Score: 183 bits (465), Expect = 2.950e-53
Identity = 97/111 (87.39%), Postives = 99/111 (89.19%), Query Frame = 1

Query:    1 PLSDPMSRVERMIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            PLSDP SR+E MIE LEAG EAGADA  PAALLASIRS +S ED AAA  LDLAARWADLHPPESIHSAASF VAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:   56 PLSDPSSRIECMIEELEAGPEAGADALTPAALLASIRSARSVEDAAAARQLDLAARWADLHPPESIHSAASFAVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 166

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001CCC612F (HNH endonuclease n=1 Tax=Nocardioides lacusdianchii TaxID=2783664 RepID=UPI001CCC612F)

HSP 1 Score: 181 bits (459), Expect = 1.170e-52
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LEAG EAGADA  PAALLASIRSRK+AEDQAAADVL+LAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:    1 MIETLEAGPEAGADALSPAALLASIRSRKAAEDQAAADVLELAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 100

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001A905986 (HNH endonuclease n=1 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001A905986)

HSP 1 Score: 179 bits (455), Expect = 3.110e-52
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LE G EAGADA GPAALLASIRSRK+AED+AAADVLDLAARWADLHPPESIHSAASFTVAGC+HEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:    1 MIEELEMGPEAGADALGPAALLASIRSRKTAEDRAAADVLDLAARWADLHPPESIHSAASFTVAGCQHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 100

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: A0A6L6AJB1_9ACTN (DUF222 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6L6AJB1_9ACTN)

HSP 1 Score: 177 bits (450), Expect = 1.490e-51
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LEAG +AGADA GPAALLASIRSR++AEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCE EEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:    1 MIERLEAGPQAGADALGPAALLASIRSRRAAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEMEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 100

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001E59110C (HNH endonuclease n=1 Tax=Nocardioides furvisabuli TaxID=375542 RepID=UPI001E59110C)

HSP 1 Score: 172 bits (437), Expect = 1.300e-49
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE+LE   E GAD+ GPAALLASIRSRK+AEDQAAADVL+LAARWADLHPPESIHSAASFTVAGCEHEEPIAGPG PLVAEFCVAELG VLGITSVSAK
Sbjct:    1 MIEILEVEPEDGADSLGPAALLASIRSRKAAEDQAAADVLELAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGAPLVAEFCVAELGAVLGITSVSAK 100

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BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001E3A05BA (HNH endonuclease n=3 Tax=Nocardioides furvisabuli TaxID=375542 RepID=UPI001E3A05BA)

HSP 1 Score: 172 bits (436), Expect = 2.050e-49
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query:   34 MIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LEAGAEAGADA GPAALLASIRS +SAED AAA+ LDLAA+WADLHPPESIH+AA+FTVAGCEHEEPIAGPGTPLVAEFC+AELGTVLG TSVSAK
Sbjct:    1 MIEALEAGAEAGADALGPAALLASIRSARSAEDAAAAEQLDLAAQWADLHPPESIHTAATFTVAGCEHEEPIAGPGTPLVAEFCIAELGTVLGTTSVSAK 100

[Close]

BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Match: UPI001A8ED602 (HNH endonuclease n=2 Tax=Nocardioides sp. S5 TaxID=2017486 RepID=UPI001A8ED602)

HSP 1 Score: 171 bits (433), Expect = 4.880e-49
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 1

Query:   34 MIEVLEAGAEAGAD-AFGPAALLASIRSRKSAEDQAAADVLDLAARWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 333
            MIE LEA  EAGAD A GPAALLASIRSRK+AEDQAAADVLDLAARWADLHPPESIH AA+F VAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK
Sbjct:    1 MIEELEAEPEAGADVALGPAALLASIRSRKTAEDQAAADVLDLAARWADLHPPESIHYAATFAVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGITSVSAK 101

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig52869.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001E63DE17	2.220e-57	95.00	hypothetical protein n=1 Tax=Nocardioides furvisab...	[more]
A0A6J7JNC4_9ZZZZ	7.810e-54	86.36	Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A...	[more]
UPI001AFAB8D3	2.260e-53	85.59	DUF222 domain-containing protein n=8 Tax=Nocardioi...	[more]
UPI001AF21EF2	2.950e-53	87.39	DUF222 domain-containing protein n=2 Tax=Nocardioi...	[more]
UPI001CCC612F	1.170e-52	94.00	HNH endonuclease n=1 Tax=Nocardioides lacusdianchi...	[more]
UPI001A905986	3.110e-52	93.00	HNH endonuclease n=1 Tax=Nocardioides sp. S5 TaxID...	[more]
A0A6L6AJB1_9ACTN	1.490e-51	93.00	DUF222 domain-containing protein n=2 Tax=root TaxI...	[more]
UPI001E59110C	1.300e-49	89.00	HNH endonuclease n=1 Tax=Nocardioides furvisabuli ...	[more]
UPI001E3A05BA	2.050e-49	88.00	HNH endonuclease n=3 Tax=Nocardioides furvisabuli ...	[more]
UPI001A8ED602	4.880e-49	91.09	HNH endonuclease n=2 Tax=Nocardioides sp. S5 TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig52869	contig	P-wetherbeei_contig52869:1..333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	1298863.AUEP01000004_gene2043
PFAMs	DUF222
Model size	333
Max annot lvl	201174\|Actinobacteria
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0016020,GO:0030312,GO:0044464,GO:0071944
Exons	1
Evalue	3.6e-17
EggNOG OGs	COG1403@1\|root,COG1403@2\|Bacteria,2GP2N@201174\|Actinobacteria,4DRTJ@85009\|Propionibacteriales
Description	HNH endonuclease
Cds size	318
COG category	V

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186792.4567156-CDS-P-wetherbeei_contig52869:0..318	1683186792.4567156-CDS-P-wetherbeei_contig52869:0..318	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig52869 1..318 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186792.474028-UTR-P-wetherbeei_contig52869:318..333	1683186792.474028-UTR-P-wetherbeei_contig52869:318..333	Phaeothamnion wetherbeei SAG_119_79	UTR	P-wetherbeei_contig52869 319..333 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig52869.1.1	prot_P-wetherbeei_contig52869.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig52869 1..318 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig52869:1..333-
coding sequence from alignment at P-wetherbeei_contig52869:1..333-

protein sequence of mRNA_P-wetherbeei_contig52869.1.1

>prot_P-wetherbeei_contig52869.1.1 ID=prot_P-wetherbeei_contig52869.1.1|Name=mRNA_P-wetherbeei_contig52869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MSRVERMIEVLEAGAEAGADAFGPAALLASIRSRKSAEDQAAADVLDLAA
RWADLHPPESIHSAASFTVAGCEHEEPIAGPGTPLVAEFCVAELGTVLGI
TSVSAK

mRNA from alignment at P-wetherbeei_contig52869:1..333-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig52869.1.1 ID=mRNA_P-wetherbeei_contig52869.1.1|Name=mRNA_P-wetherbeei_contig52869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig52869:1..333- (Phaeothamnion wetherbeei SAG_119_79)
CCGTTGTCGGACCCCATGTCTAGAGTCGAACGCATGATCGAGGTACTGGA
AGCAGGAGCAGAGGCCGGGGCAGACGCCTTCGGCCCCGCGGCCCTGCTCG
CCTCGATCCGCTCCCGGAAGTCAGCTGAGGACCAGGCCGCAGCAGACGTC
CTCGATCTCGCTGCGCGCTGGGCCGACCTGCACCCGCCCGAGTCCATCCA
CTCCGCCGCCTCGTTCACCGTCGCGGGGTGTGAGCACGAGGAACCCATCG
CCGGACCGGGTACGCCGCTGGTCGCGGAGTTCTGCGTCGCCGAGCTCGGC
ACGGTCCTGGGCATCACTTCGGTGTCGGCGAAG

Coding sequence (CDS) from alignment at P-wetherbeei_contig52869:1..333-

>mRNA_P-wetherbeei_contig52869.1.1 ID=mRNA_P-wetherbeei_contig52869.1.1|Name=mRNA_P-wetherbeei_contig52869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig52869:1..333- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTAGAGTCGAACGCATGATCGAGGTACTGGAAGCAGGAGCAGAGGC
CGGGGCAGACGCCTTCGGCCCCGCGGCCCTGCTCGCCTCGATCCGCTCCC
GGAAGTCAGCTGAGGACCAGGCCGCAGCAGACGTCCTCGATCTCGCTGCG
CGCTGGGCCGACCTGCACCCGCCCGAGTCCATCCACTCCGCCGCCTCGTT
CACCGTCGCGGGGTGTGAGCACGAGGAACCCATCGCCGGACCGGGTACGC
CGCTGGTCGCGGAGTTCTGCGTCGCCGAGCTCGGCACGGTCCTGGGCATC
ACTTCGGTGTCGGCGAAG