mRNA_P-wetherbeei_contig52867.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52867.1.1
Unique NamemRNA_P-wetherbeei_contig52867.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52867.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52867contigP-wetherbeei_contig52867:214..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10090.ENSMUSP00000083385
Preferred nameRNASEL
PFAMsAnk,Ank_2,Ank_4,Ank_5,Pkinase,Ribonuc_2-5A
Model size327
Max annot lvl33208|Metazoa
KEGG koko:K01165
KEGG Pathwayko04621,ko05160,ko05164,ko05168,map04621,map05160,map05164,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0001959,GO:0002252,GO:0002376,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010827,GO:0010828,GO:0016070,GO:0016072,GO:0016310,GO:0016363,GO:0016787,GO:0016788,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019843,GO:0022613,GO:0023051,GO:0023052,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031347,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0034097,GO:0034340,GO:0034399,GO:0034470,GO:0034641,GO:0034660,GO:0034762,GO:0034764,GO:0036211,GO:0042221,GO:0042254,GO:0042802,GO:0043021,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043900,GO:0043901,GO:0043903,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045069,GO:0045071,GO:0045087,GO:0045088,GO:0045444,GO:0045893,GO:0045935,GO:0045944,GO:0046324,GO:0046326,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0048583,GO:0048584,GO:0048869,GO:0050776,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060337,GO:0060338,GO:0060759,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0098542,GO:0140098,GO:1900076,GO:1900078,GO:1901360,GO:1901363,GO:1901564,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2001141,GO:2001273,GO:2001275
Exons1
Evalue0.000197
EggNOG OGsCOG0515@1|root,COG0666@1|root,KOG1027@2759|Eukaryota,KOG4177@2759|Eukaryota,39TY3@33154|Opisthokonta,3BKUA@33208|Metazoa,3D2CK@33213|Bilateria,485NI@7711|Chordata,48X04@7742|Vertebrata,3J1G5@40674|Mammalia,35D02@314146|Euarchontoglires,4PTPP@9989|Rodentia
DescriptionRibonuclease 2-5A
Cds size327
COG categoryT
BRITEko00000,ko00001,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.3840823-CDS-P-wetherbeei_contig52867:213..5401683186792.3840823-CDS-P-wetherbeei_contig52867:213..540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52867 214..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52867.1.1prot_P-wetherbeei_contig52867.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52867 214..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52867.1.1

>prot_P-wetherbeei_contig52867.1.1 ID=prot_P-wetherbeei_contig52867.1.1|Name=mRNA_P-wetherbeei_contig52867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
ELNSALVAAVASCDVGRVKALLDEGAPANASEHRPYKTSKDWWSDTPVLY
TACEKKFDEIVALLLSRGADPNSYLYRYENMMQETIPTLIAAYPSAALVE
RLLEAGASP
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mRNA from alignment at P-wetherbeei_contig52867:214..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52867.1.1 ID=mRNA_P-wetherbeei_contig52867.1.1|Name=mRNA_P-wetherbeei_contig52867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig52867:214..540+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCAATTCGGCGCTCGTTGCAGCCGTCGCAAGCTGCGACGTGGGGCG
CGTCAAGGCCCTACTCGACGAAGGTGCGCCGGCCAACGCGAGCGAGCATC
GTCCGTACAAGACCTCGAAGGATTGGTGGAGCGATACGCCGGTTCTTTAC
ACGGCCTGCGAGAAGAAATTCGACGAGATCGTTGCACTGCTGCTCAGTCG
TGGCGCCGACCCCAATTCCTATCTCTACCGGTACGAGAACATGATGCAGG
AGACGATCCCGACGCTCATCGCCGCATATCCATCTGCGGCCCTCGTCGAG
CGATTACTGGAGGCAGGTGCGAGCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52867:214..540+

>mRNA_P-wetherbeei_contig52867.1.1 ID=mRNA_P-wetherbeei_contig52867.1.1|Name=mRNA_P-wetherbeei_contig52867.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig52867:214..540+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCAATTCGGCGCTCGTTGCAGCCGTCGCAAGCTGCGACGTGGGGCG
CGTCAAGGCCCTACTCGACGAAGGTGCGCCGGCCAACGCGAGCGAGCATC
GTCCGTACAAGACCTCGAAGGATTGGTGGAGCGATACGCCGGTTCTTTAC
ACGGCCTGCGAGAAGAAATTCGACGAGATCGTTGCACTGCTGCTCAGTCG
TGGCGCCGACCCCAATTCCTATCTCTACCGGTACGAGAACATGATGCAGG
AGACGATCCCGACGCTCATCGCCGCATATCCATCTGCGGCCCTCGTCGAG
CGATTACTGGAGGCAGGTGCGAGCCCC
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