mRNA_P-wetherbeei_contig52853.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52853.1.1
Unique NamemRNA_P-wetherbeei_contig52853.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A1L1PMQ3_HYDIT (Transcriptional regulator, GntR family n=2 Tax=Hydrogenophaga TaxID=47420 RepID=A0A1L1PMQ3_HYDIT)

HSP 1 Score: 166 bits (419), Expect = 2.360e-49
Identity = 92/119 (77.31%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 MNHDTLAERDSQDTVTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALAATQ 357
            MN  T     +  TVTD VR ALEDDIRQGRLRPGDA+DVKAVAERF ISRTPAKEALLQLAAAGL+ F+PRRGAVV RLEPRE+FGMLEVLAVLE+EAARL ARRM+  QR+AL A Q
Sbjct:    1 MNDTTTTAEPTAATVTDEVRLALEDDIRQGRLRPGDALDVKAVAERFGISRTPAKEALLQLAAAGLMNFSPRRGAVVTRLEPREIFGMLEVLAVLEAEAARLSARRMSNEQRQALDAVQ 119          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A1H5EWF7_9BRAD (Transcriptional regulator, GntR family n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H5EWF7_9BRAD)

HSP 1 Score: 112 bits (281), Expect = 1.320e-28
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALA 348
             +D +RK LEDDI  GRL PGD +D + +AERF +SRTPA+EALLQLAAAG+V   PR+GAVV  + P+   GM+EVL  LE+EAA L ARRM+  ++  LA
Sbjct:    5 TSDALRKELEDDIEHGRLSPGDKLDEQTLAERFEVSRTPAREALLQLAAAGIVRLVPRQGAVVSSVSPQLAIGMVEVLTALEAEAAGLAARRMSSTEKAELA 106          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A1I3BSW1_9RHOB (Transcriptional regulator, GntR family n=1 Tax=Albimonas pacifica TaxID=1114924 RepID=A0A1I3BSW1_9RHOB)

HSP 1 Score: 109 bits (273), Expect = 2.140e-27
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREAL 345
             +D VR+ LE +IR G LRPGD++D +++AERF++SRTPA+EA+LQLAA+GLVT  PR GAVV  LE ++   M+E L  LE EAA L ARRM+ A+ E L
Sbjct:    4 ASDKVRELLEREIRHGALRPGDSIDERSLAERFSVSRTPAREAILQLAASGLVTMRPRHGAVVAGLEVKDAIAMMETLVALEGEAAALAARRMSAAEVEEL 104          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A8B2P5B8_9HYPH (GntR family transcriptional regulator n=2 Tax=Acuticoccus sediminis TaxID=2184697 RepID=A0A8B2P5B8_9HYPH)

HSP 1 Score: 107 bits (266), Expect = 2.690e-26
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALA 348
             ++ VR+ +ED+IR G LRPGD +D +++AERF +SRTPA+EAL+QLAA+GLV   PR GAV+ R+   E   M+E L  LE EAA L ARRM+ A+ E LA
Sbjct:    4 ASETVRRRVEDEIRYGALRPGDTIDERSLAERFEVSRTPAREALIQLAASGLVELRPRHGAVITRVGVTEAIAMMETLVALEGEAASLAARRMSAAETEQLA 105          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: UPI001999361A (GntR family transcriptional regulator n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI001999361A)

HSP 1 Score: 106 bits (265), Expect = 3.710e-26
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALA 348
             ++ +RK LEDDI  GRL PGD +D + +A RF +SRTPA+EALLQLAAAG+V   PR+GAVV  + P+   GM+EVL  LE+EAA L ARRM+  ++  LA
Sbjct:    8 TSESLRKELEDDIEHGRLAPGDRLDEQTLAARFDVSRTPAREALLQLAAAGIVRMVPRQGAVVSSVSPQLGVGMVEVLTALEAEAAGLAARRMSDMEKAKLA 109          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: UPI00131B93CB (GntR family transcriptional regulator n=1 Tax=Chachezhania sediminis TaxID=2599291 RepID=UPI00131B93CB)

HSP 1 Score: 103 bits (256), Expect = 8.010e-25
Identity = 54/103 (52.43%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALAA 351
             ++ +R+ LE +I  GRL+PGD +D K++AERF +SRTPA+EA++QLAA+GLV   PR GAVV  L   +   M+E LA+LE+EAA L A RM P + EA+ A
Sbjct:    4 ASETLRRKLEGEINAGRLKPGDTIDEKSLAERFEVSRTPAREAIMQLAASGLVEMRPRHGAVVVGLNAEQAVAMMETLAILEAEAAALSAERMLPEEVEAMRA 106          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A221JXH4_9RHOB (HTH-type transcriptional repressor RspR n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A221JXH4_9RHOB)

HSP 1 Score: 102 bits (255), Expect = 1.130e-24
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREAL 345
            V+D VR+ LE +I +G+LRPGD +D K ++ERF +SRTPA+EA++QLAA GLV   PR GAVV  L   E   MLE LA LESEAA L A+R+   + +AL
Sbjct:    4 VSDTVRELLEKEISRGKLRPGDLIDEKMLSERFQVSRTPAREAIMQLAATGLVQMRPRHGAVVSELSADEAVAMLETLACLESEAAALAAQRIRQEELDAL 104          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A259IP68_9HYPH (GntR family transcriptional regulator n=2 Tax=unclassified Azorhizobium TaxID=2645479 RepID=A0A259IP68_9HYPH)

HSP 1 Score: 102 bits (254), Expect = 1.670e-24
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1
Query:   43 VTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALAATQA 360
             T  +R+ALEDDI  GRL+PG  +D   +AERF +SRTP +EAL+QLAA+G+V   PRRGA V  L PR++    E+++ LE+   RL ARRMTP  R AL A  A
Sbjct:    5 ATPRLREALEDDIIGGRLKPGQRLDEVGLAERFGVSRTPIREALIQLAASGMVEIRPRRGAYVALLGPRQLIESFELMSELEAACGRLAARRMTPEDRAALEAAHA 110          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A3L7AI78_9HYPH (GntR family transcriptional regulator n=2 Tax=Xanthobacter tagetidis TaxID=60216 RepID=A0A3L7AI78_9HYPH)

HSP 1 Score: 102 bits (253), Expect = 1.960e-24
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   46 TDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREALAATQA 360
            T  +R+ALEDDI  GRLRPG  +D  ++AERF +SRTP +EAL+QL+A+GLV   PRRGA V  L PRE+    E++A +E+  ARL A RM+ A R A+AA  A
Sbjct:    6 TPRLREALEDDIVAGRLRPGQRLDEVSLAERFGVSRTPIREALIQLSASGLVDIRPRRGAHVTLLGPRELVESFELMAEIEASCARLAAARMSAADRAAIAAAHA 110          
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Match: A0A286GFD5_9PROT (Transcriptional regulator, GntR family n=2 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GFD5_9PROT)

HSP 1 Score: 102 bits (253), Expect = 2.250e-24
Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 1
Query:   40 TVTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAISRTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAARLCARRMTPAQREAL 345
            T  D +R+ALE+DI  GRL+PGD +D +++A+RF +SRTP +EAL QL+A+GL+   PR+GAVV  +    +  M EV+A LE+  ARL ARRM PA+REAL
Sbjct:    7 TRADQLRRALEEDIFAGRLKPGDRLDEQSLAQRFDVSRTPVREALRQLSASGLIEVRPRQGAVVAVITLPRLVEMFEVMAELEAMCARLAARRMNPAEREAL 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52853.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L1PMQ3_HYDIT2.360e-4977.31Transcriptional regulator, GntR family n=2 Tax=Hyd... [more]
A0A1H5EWF7_9BRAD1.320e-2857.84Transcriptional regulator, GntR family n=4 Tax=Bra... [more]
A0A1I3BSW1_9RHOB2.140e-2757.43Transcriptional regulator, GntR family n=1 Tax=Alb... [more]
A0A8B2P5B8_9HYPH2.690e-2654.90GntR family transcriptional regulator n=2 Tax=Acut... [more]
UPI001999361A3.710e-2655.88GntR family transcriptional regulator n=1 Tax=Tard... [more]
UPI00131B93CB8.010e-2552.43GntR family transcriptional regulator n=1 Tax=Chac... [more]
A0A221JXH4_9RHOB1.130e-2455.45HTH-type transcriptional repressor RspR n=4 Tax=Rh... [more]
A0A259IP68_9HYPH1.670e-2452.83GntR family transcriptional regulator n=2 Tax=uncl... [more]
A0A3L7AI78_9HYPH1.960e-2454.29GntR family transcriptional regulator n=2 Tax=Xant... [more]
A0A286GFD5_9PROT2.250e-2453.92Transcriptional regulator, GntR family n=2 Tax=Cae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52853contigP-wetherbeei_contig52853:164..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1298867.AUES01000001_gene1885
Preferred namematR
PFAMsFCD,GntR
Model size378
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.61e-29
EggNOG OGsCOG1802@1|root,COG1802@2|Bacteria,1R90Y@1224|Proteobacteria,2U6A9@28211|Alphaproteobacteria,3JWIK@41294|Bradyrhizobiaceae
DescriptionFCD
Cds size378
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.2353804-CDS-P-wetherbeei_contig52853:163..5411683186792.2353804-CDS-P-wetherbeei_contig52853:163..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52853 164..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52853.1.1prot_P-wetherbeei_contig52853.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52853 164..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52853.1.1

>prot_P-wetherbeei_contig52853.1.1 ID=prot_P-wetherbeei_contig52853.1.1|Name=mRNA_P-wetherbeei_contig52853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MNHDTLAERDSQDTVTDGVRKALEDDIRQGRLRPGDAMDVKAVAERFAIS
RTPAKEALLQLAAAGLVTFAPRRGAVVKRLEPREVFGMLEVLAVLESEAA
RLCARRMTPAQREALAATQARAATAM
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mRNA from alignment at P-wetherbeei_contig52853:164..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52853.1.1 ID=mRNA_P-wetherbeei_contig52853.1.1|Name=mRNA_P-wetherbeei_contig52853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig52853:164..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCACGACACGCTGGCAGAACGGGACAGCCAGGACACCGTCACCGA CGGTGTCCGCAAGGCGCTGGAGGACGACATTCGCCAGGGCAGGCTGCGCC CGGGCGATGCGATGGACGTCAAGGCCGTGGCCGAGCGGTTCGCGATTTCC CGCACGCCGGCCAAGGAAGCCCTGCTGCAATTGGCCGCTGCCGGGCTGGT GACGTTCGCCCCCCGGCGTGGGGCGGTCGTCAAACGGCTGGAGCCGCGCG AGGTGTTCGGGATGCTGGAAGTGCTGGCCGTGCTGGAATCGGAAGCGGCA AGGCTGTGCGCCCGCCGCATGACACCGGCGCAGCGCGAGGCCCTGGCGGC GACACAGGCGCGCGCCGCGACGGCCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52853:164..541+

>mRNA_P-wetherbeei_contig52853.1.1 ID=mRNA_P-wetherbeei_contig52853.1.1|Name=mRNA_P-wetherbeei_contig52853.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig52853:164..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCACGACACGCTGGCAGAACGGGACAGCCAGGACACCGTCACCGA
CGGTGTCCGCAAGGCGCTGGAGGACGACATTCGCCAGGGCAGGCTGCGCC
CGGGCGATGCGATGGACGTCAAGGCCGTGGCCGAGCGGTTCGCGATTTCC
CGCACGCCGGCCAAGGAAGCCCTGCTGCAATTGGCCGCTGCCGGGCTGGT
GACGTTCGCCCCCCGGCGTGGGGCGGTCGTCAAACGGCTGGAGCCGCGCG
AGGTGTTCGGGATGCTGGAAGTGCTGGCCGTGCTGGAATCGGAAGCGGCA
AGGCTGTGCGCCCGCCGCATGACACCGGCGCAGCGCGAGGCCCTGGCGGC
GACACAGGCGCGCGCCGCGACGGCCATG
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