mRNA_P-wetherbeei_contig52847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52847.1.1
Unique NamemRNA_P-wetherbeei_contig52847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A127F650_9HYPH (Cytochrome c, class I n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F650_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 9.200e-83
Identity = 122/152 (80.26%), Postives = 133/152 (87.50%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFELNK+MGAVLGTCLALLSLNI AG IF++H P KPG+EVAV+EE K G PGE APAE PLPVRFASAD  RGE +AKKC ACHT GKGEPNRVGPNL+ +VGRPKASEAGFNYS  MK+QKGNWTPEDLD +LTNP+ MVPGTNMSFA
Sbjct:    1 MDSFELNKIMGAVLGTCLALLSLNIAAGAIFSSHEPEKPGYEVAVKEEPKAGAPGEKAPAEVPLPVRFASADVSRGEASAKKCMACHTLGKGEPNRVGPNLWDIVGRPKASEAGFNYSAAMKSQKGNWTPEDLDVYLTNPRGMVPGTNMSFA 152          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A1Q7BMH3_9PROT (Cytochrome c family protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BMH3_9PROT)

HSP 1 Score: 200 bits (508), Expect = 6.900e-63
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFE+NK++GA+LGTCL +LS+NI AG IF    PAKPG+E+AV E+A  GKP E    ++P+    A AD  RGENAAKKC ACHTF KG  N VGPNLYGVVGRPKASEAGFNYS  MKA+ GNWT +DL  F+ NP+  VPGTNM+FA
Sbjct:    1 MDSFEVNKILGAILGTCLGVLSINIAAGAIFTPVKPAKPGYEIAVPEQAPAGKPAEPEK-QDPIEQLLAKADVARGENAAKKCQACHTFTKGGRNLVGPNLYGVVGRPKASEAGFNYSAAMKAKGGNWTIDDLSQFIINPRGYVPGTNMTFA 151          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A1Q7BNY9_9PROT (Cytochrome c family protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BNY9_9PROT)

HSP 1 Score: 197 bits (501), Expect = 7.990e-62
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFE+NK++GAVLGTCL LLS+NI AG IFA   PAKPG+E+ V E+A  G+P E    +EP+    A+AD GRGENAAKKC ACHTF KG  N VGPNL+GV+GRPKASEAGFNYS  +KA+ G W  +DL+ F+ NP+  +PGTNM+FA
Sbjct:    1 MDSFEVNKILGAVLGTCLGLLSINIAAGAIFAPTKPAKPGYEIVVPEKAPSGQPAEPQK-QEPIEQLLANADVGRGENAAKKCQACHTFNKGGRNLVGPNLWGVIGRPKASEAGFNYSAALKAKGGTWAIDDLNQFINNPRGYIPGTNMTFA 151          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A537U1U9_9PROT (Cytochrome c family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537U1U9_9PROT)

HSP 1 Score: 196 bits (497), Expect = 3.240e-61
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFE+NK++GAVLGTCL LL++NI AG IFA   PAKPG+E+ V E+   GKP E    ++P+    A+AD  RGEN+AKKC ACHTF KG  N VGPNL+GVVGR +ASE GFNYSG MKA+ GNWT EDL+ F+TNP+  +PGTNM+FA
Sbjct:    1 MDSFEVNKILGAVLGTCLCLLAINIAAGAIFAPEKPAKPGYELGVPEQPPSGKPAEQEK-QQPIEQLLANADMKRGENSAKKCQACHTFNKGGRNLVGPNLWGVVGRQRASEPGFNYSGAMKAKGGNWTIEDLNQFITNPRGFIPGTNMTFA 151          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A537SS55_9PROT (Cytochrome c family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SS55_9PROT)

HSP 1 Score: 194 bits (492), Expect = 1.860e-60
Identity = 94/152 (61.84%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFE+NK++GA+LGT L +LS+NI AG IFA   PAKPG++VAV E+   GKP E    ++P+    A+AD GRGEN+AKKC ACHTF KG  N VGPNL+GVVGRP+ASEAGFNYS  MK + GNWT ++L  F+TNP+  +PGTNM+FA
Sbjct:    1 MDSFEVNKILGAILGTLLGVLSINIAAGAIFAPTQPAKPGYDVAVPEQTPAGKPAEPQQ-QQPIEQLLANADVGRGENSAKKCQACHTFTKGGRNMVGPNLWGVVGRPRASEAGFNYSAAMKGKGGNWTIDELSQFITNPRGFIPGTNMTFA 151          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A537L7L1_9PROT (Cytochrome c family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L7L1_9PROT)

HSP 1 Score: 188 bits (477), Expect = 6.440e-58
Identity = 96/152 (63.16%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFE+NK++GA+L TCL LLSLNI A  +F    PAKPGFEVA  E      P  A   +EP+    ASA   +G NAAKKCAACHTFGKGEPNRVGPNLYGVVGRPK +EA F+YS  +K + GNW+ +DLD FL NPKA  PGT MSFA
Sbjct:    1 MDSFEINKILGALLFTCLCLLSLNIAAEAVFHPAKPAKPGFEVAATEST--AGPAAAKEPDEPIEKLLASATVEKGANAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKGTEAKFDYSAALKGKGGNWSVDDLDKFLANPKAFAPGTKMSFA 150          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A833GDA7_9HYPH (Cytochrome c family protein n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GDA7_9HYPH)

HSP 1 Score: 185 bits (469), Expect = 5.290e-57
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKP-GEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            M+SFELNK++GA+LGTCL LLSLNI  GTIFA   PAKPG+E+AV ++   G P G AA  E+P+    AS+DA RGE AAKKCAACHTF KG PNRVGPNLYGVV R KAS + FNYS  +K + G W+ EDL+ F+ NPK  V GTNM FA
Sbjct:    1 MNSFELNKILGALLGTCLILLSLNIATGTIFAPAKPAKPGYEIAVPDQPSAGAPAGAAAEPEKPIAELLASSDAKRGETAAKKCAACHTFEKGGPNRVGPNLYGVVNRAKASGS-FNYSAALKGKGGEWSFEDLNKFIANPKGFVAGTNMQFA 152          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: UPI001BAE3A78 (cytochrome c family protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAE3A78)

HSP 1 Score: 182 bits (461), Expect = 7.650e-56
Identity = 89/152 (58.55%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFELNK+MGA+LGTCL L+ +N+ A  +F     AKPGFE+AV+EE+  G+   AA   EP+     +A   +G  AAKKCAACHTF KG PNRVGPNLYG+V R +ASEAGFNYS PMKA+ G WT ++L+ FL NPK  + GT M FA
Sbjct:    1 MDSFELNKIMGAILGTCLVLMVMNLTANAVFTPKTAAKPGFEIAVKEESGGGEKAAAAAPSEPIEKLLQTASVEKGATAAKKCAACHTFEKGGPNRVGPNLYGIVDRDRASEAGFNYSAPMKAKGGKWTFDELNKFLANPKGYIAGTAMGFA 152          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: UPI000464F0C4 (cytochrome c family protein n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI000464F0C4)

HSP 1 Score: 181 bits (460), Expect = 1.090e-55
Identity = 96/153 (62.75%), Postives = 109/153 (71.24%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPA-EEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFELNK++GAVL TCL LL  N  A  +FA   P KPGFE+AV+EEA  G   EAAPA EEP+     +A   +GE AAKKC ACHTF KGEPNRVGPNL+GVVG  K    GFN+S  MKA+ G WT +DL+ FLTNPKA VPGT M FA
Sbjct:    1 MDSFELNKILGAVLATCLVLLITNFTANALFAPKMPEKPGFEIAVKEEAAGGAK-EAAPAKEEPIEKLLQTASVQKGEAAAKKCQACHTFAKGEPNRVGPNLWGVVGDKKGEGRGFNFSAAMKAKGGTWTDDDLNQFLTNPKAFVPGTAMGFA 152          
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Match: A0A537MS04_9PROT (Cytochrome c family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MS04_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.590e-55
Identity = 92/152 (60.53%), Postives = 113/152 (74.34%), Query Frame = 1
Query:    1 MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAKPGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPNLYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMSFA 456
            MDSFELNK++GA+LGTCL      I AG IFA   PAKPG+E+ V E+ KPG   +    ++P+    ASADAGRGEN+AKKCAACHTF KG    VGPNL+GVVGR KASE GFNYS  +K++ GNWT +D++ F+TNP+  VPGTNM+FA
Sbjct:    1 MDSFELNKILGAILGTCL------IAAGAIFAPTKPAKPGYEIVVPEQ-KPGGEAKQQEPQQPIEQLLASADAGRGENSAKKCAACHTFNKGGRPLVGPNLWGVVGRAKASEGGFNYSAALKSKGGNWTIDDINQFITNPRGTVPGTNMTFA 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127F650_9HYPH9.200e-8380.26Cytochrome c, class I n=1 Tax=Rhodoplanes sp. Z2-Y... [more]
A0A1Q7BMH3_9PROT6.900e-6365.13Cytochrome c family protein n=2 Tax=unclassified A... [more]
A0A1Q7BNY9_9PROT7.990e-6263.16Cytochrome c family protein n=1 Tax=Alphaproteobac... [more]
A0A537U1U9_9PROT3.240e-6163.16Cytochrome c family protein n=1 Tax=Alphaproteobac... [more]
A0A537SS55_9PROT1.860e-6061.84Cytochrome c family protein n=1 Tax=Alphaproteobac... [more]
A0A537L7L1_9PROT6.440e-5863.16Cytochrome c family protein n=1 Tax=Alphaproteobac... [more]
A0A833GDA7_9HYPH5.290e-5763.40Cytochrome c family protein n=1 Tax=Pseudorhodopla... [more]
UPI001BAE3A787.650e-5658.55cytochrome c family protein n=1 Tax=unclassified B... [more]
UPI000464F0C41.090e-5562.75cytochrome c family protein n=1 Tax=Bradyrhizobium... [more]
A0A537MS04_9PROT1.590e-5560.53Cytochrome c family protein n=1 Tax=Alphaproteobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52847contigP-wetherbeei_contig52847:2..457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1040989.AWZU01000006_gene440
Preferred namecyc
PFAMsCytochrom_C
Model size456
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC03151,RC03152
KEGG koko:K08738
KEGG TC3.D.4.6
KEGG ReactionR10151
KEGG Pathwayko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00595
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.78e-56
EggNOG OGsCOG3474@1|root,COG3474@2|Bacteria,1RIDN@1224|Proteobacteria,2U142@28211|Alphaproteobacteria,3JQRA@41294|Bradyrhizobiaceae
DescriptionCytochrome c
Cds size456
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.1501284-CDS-P-wetherbeei_contig52847:1..4571683186792.1501284-CDS-P-wetherbeei_contig52847:1..457Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52847 2..457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52847.1.1prot_P-wetherbeei_contig52847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52847 2..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52847.1.1

>prot_P-wetherbeei_contig52847.1.1 ID=prot_P-wetherbeei_contig52847.1.1|Name=mRNA_P-wetherbeei_contig52847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MDSFELNKVMGAVLGTCLALLSLNILAGTIFATHAPAKPGFEVAVQEEAK
PGKPGEAAPAEEPLPVRFASADAGRGENAAKKCAACHTFGKGEPNRVGPN
LYGVVGRPKASEAGFNYSGPMKAQKGNWTPEDLDHFLTNPKAMVPGTNMS
FA
back to top

mRNA from alignment at P-wetherbeei_contig52847:2..457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52847.1.1 ID=mRNA_P-wetherbeei_contig52847.1.1|Name=mRNA_P-wetherbeei_contig52847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig52847:2..457- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTCCTTCGAACTCAACAAGGTCATGGGCGCCGTTCTGGGCACCTG CCTCGCTCTCCTTTCGCTCAACATTCTCGCGGGGACGATCTTTGCGACCC ATGCACCGGCGAAGCCGGGCTTCGAGGTCGCGGTTCAGGAAGAGGCCAAG CCCGGCAAACCCGGCGAGGCAGCGCCGGCGGAGGAACCGCTGCCGGTTCG CTTTGCCAGCGCCGACGCCGGCCGCGGCGAGAATGCCGCAAAGAAGTGCG CCGCCTGCCACACCTTCGGCAAGGGCGAGCCTAACCGGGTTGGCCCCAAT CTCTACGGTGTCGTGGGCCGCCCGAAGGCGTCGGAAGCCGGCTTCAATTA TTCCGGTCCGATGAAGGCGCAGAAGGGCAACTGGACGCCCGAAGACCTCG ATCATTTCCTGACCAACCCGAAGGCGATGGTGCCCGGTACCAACATGAGC TTTGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52847:2..457-

>mRNA_P-wetherbeei_contig52847.1.1 ID=mRNA_P-wetherbeei_contig52847.1.1|Name=mRNA_P-wetherbeei_contig52847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig52847:2..457- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTCCTTCGAACTCAACAAGGTCATGGGCGCCGTTCTGGGCACCTG
CCTCGCTCTCCTTTCGCTCAACATTCTCGCGGGGACGATCTTTGCGACCC
ATGCACCGGCGAAGCCGGGCTTCGAGGTCGCGGTTCAGGAAGAGGCCAAG
CCCGGCAAACCCGGCGAGGCAGCGCCGGCGGAGGAACCGCTGCCGGTTCG
CTTTGCCAGCGCCGACGCCGGCCGCGGCGAGAATGCCGCAAAGAAGTGCG
CCGCCTGCCACACCTTCGGCAAGGGCGAGCCTAACCGGGTTGGCCCCAAT
CTCTACGGTGTCGTGGGCCGCCCGAAGGCGTCGGAAGCCGGCTTCAATTA
TTCCGGTCCGATGAAGGCGCAGAAGGGCAACTGGACGCCCGAAGACCTCG
ATCATTTCCTGACCAACCCGAAGGCGATGGTGCCCGGTACCAACATGAGC
TTTGCG
back to top