mRNA_P-wetherbeei_contig5284.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5284.4.1
Unique NamemRNA_P-wetherbeei_contig5284.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.450e-8
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 QVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            +VK+ LVGASV AV   Q+ RWPPYR+DNLTS  IR+RQ+
Sbjct: 1045 RVKLALVGASVTAVFERQDLRWPPYRVDNLTSLGIRYRQA 1084
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: D8LME2_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 8.460e-8
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 QVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            +VK+ LVGASV AV   Q+ RWPPYR+DNLTS  IR+RQ+
Sbjct:  717 RVKLALVGASVTAVFERQDLRWPPYRVDNLTSLGIRYRQA 756
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A7R9Y9W6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9W6_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.960e-7
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            +  ++ LVG S+V ++   + RWPPYRIDN TSH +RFRQS
Sbjct: 2959 ISARMSLVGGSIVVLLEKPDPRWPPYRIDNYTSHDVRFRQS 2999
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A484DR46_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR46_BRELC)

HSP 1 Score: 53.5 bits (127), Expect = 4.040e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++EL+G SV  +  P+  R+PPYRIDN+TS RIR++Q+
Sbjct: 3072 LQCQIELIGGSVALIFRPESKRFPPYRIDNMTSFRIRYKQT 3112
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: G4YH06_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH06_PHYSP)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  +   +  R+PPYRIDN+TS RIRF+Q+
Sbjct: 3096 LQCQIELVGGSVALIFREESKRFPPYRIDNMTSFRIRFKQT 3136
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A6A3U5U2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5U2_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  +   +  R+PPYRIDN+TS RIRF+Q+
Sbjct: 2465 LQCQIELVGGSVALIFREESKRFPPYRIDNMTSFRIRFKQT 2505
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A662Y4Z9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4Z9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  V   +  R+PPYRIDN+TS RIR++Q+
Sbjct: 2992 LQCQIELVGGSVALVFREESRRFPPYRIDNMTSFRIRYKQT 3032
[Close]
BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: A0A662YAD8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YAD8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.650e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  V   +  R+PPYRIDN+TS RIR++Q+
Sbjct: 2701 LQCQIELVGGSVALVFREESRRFPPYRIDNMTSFRIRYKQT 2741
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BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: W2Q5C4_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2Q5C4_PHYPN)

HSP 1 Score: 50.8 bits (120), Expect = 3.630e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  +   +  R+PPYRIDN+TS RIR++Q+
Sbjct: 3081 LQCQIELVGGSVALIFREESKRFPPYRIDNMTSFRIRYKQT 3121
[Close]
BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Match: V9EYS4_PHYPR (Uncharacterized protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=V9EYS4_PHYPR)

HSP 1 Score: 50.8 bits (120), Expect = 3.630e-6
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS 123
            LQ ++ELVG SV  +   +  R+PPYRIDN+TS RIR++Q+
Sbjct: 3081 LQCQIELVGGSVALIFREESKRFPPYRIDNMTSFRIRYKQT 3121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5284.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE8.450e-865.00PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LME2_ECTSI8.460e-865.00SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7R9Y9W6_9STRA2.960e-753.66Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A484DR46_BRELC4.040e-753.66Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4YH06_PHYSP1.420e-656.10Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3U5U2_9STRA1.420e-656.10Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A662Y4Z9_9STRA2.650e-656.10Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662YAD8_9STRA2.650e-656.10Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
W2Q5C4_PHYPN3.630e-653.66Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9EYS4_PHYPR3.630e-653.66Uncharacterized protein n=6 Tax=Phytophthora paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5284contigP-wetherbeei_contig5284:3548..3670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LME2
PFAMsATG_C,Chorein_N,PH,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K19525,ko:K19527
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.39e-08
EggNOG OGsKOG1796@1|root,KOG1796@2759|Eukaryota
Descriptionprotein transport
Cds size123
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.0755842-CDS-P-wetherbeei_contig5284:3547..36701683186792.0755842-CDS-P-wetherbeei_contig5284:3547..3670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 3548..3670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5284.4.1prot_P-wetherbeei_contig5284.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5284 3548..3670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5284.4.1

>prot_P-wetherbeei_contig5284.4.1 ID=prot_P-wetherbeei_contig5284.4.1|Name=mRNA_P-wetherbeei_contig5284.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
LQVKVELVGASVVAVMTPQEARWPPYRIDNLTSHRIRFRQS
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mRNA from alignment at P-wetherbeei_contig5284:3548..3670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5284.4.1 ID=mRNA_P-wetherbeei_contig5284.4.1|Name=mRNA_P-wetherbeei_contig5284.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:3548..3670- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGAAGGTGGAGCTGGTGGGAGCGTCGGTGGTGGCCGTCATGAC
CCCGCAAGAGGCGCGGTGGCCGCCCTACCGGATCGACAACCTCACCTCCC
ACCGGATCCGCTTCCGCCAGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5284:3548..3670-

>mRNA_P-wetherbeei_contig5284.4.1 ID=mRNA_P-wetherbeei_contig5284.4.1|Name=mRNA_P-wetherbeei_contig5284.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:3548..3670- (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGAAGGTGGAGCTGGTGGGAGCGTCGGTGGTGGCCGTCATGAC
CCCGCAAGAGGCGCGGTGGCCGCCCTACCGGATCGACAACCTCACCTCCC
ACCGGATCCGCTTCCGCCAGTCG
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