mRNA_P-wetherbeei_contig52838.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52838.1.1
Unique NamemRNA_P-wetherbeei_contig52838.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A2R7LS76_9CAUL (TonB-dependent receptor (Fragment) n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A2R7LS76_9CAUL)

HSP 1 Score: 261 bits (666), Expect = 3.100e-84
Identity = 127/171 (74.27%), Postives = 153/171 (89.47%), Query Frame = 1
Query:   25 TEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            TEV+A+++ GQGQSRQVQ + D+ I+   AG SPLK ID LPGVTFQS+D FG+YEWSTRISIRGFNQNQLGFTLDG+PLGDMSYGN+NGLHISRAI SE+IG++EL+QGAG+L+ ASTSNLGGTL+FFSR+P+E FG Q N+TVGSDNM+R F R+++G+IEALGGLRGY
Sbjct:   41 TEVDAVIVIGQGQSRQVQALKDDAIALEAAGSSPLKAIDKLPGVTFQSSDAFGSYEWSTRISIRGFNQNQLGFTLDGIPLGDMSYGNHNGLHISRAITSENIGRLELAQGAGSLATASTSNLGGTLQFFSRNPSEAFGAQTNVTVGSDNMYRLFGRVDTGAIEALGGLRGY 211          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A2W5UYG3_9CAUL (TonB-dependent receptor (Fragment) n=1 Tax=Caulobacter segnis TaxID=88688 RepID=A0A2W5UYG3_9CAUL)

HSP 1 Score: 259 bits (661), Expect = 1.120e-82
Identity = 130/170 (76.47%), Postives = 146/170 (85.88%), Query Frame = 1
Query:   28 EVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            EV+A++I GQGQSRQ+QT++ + I    AG S LK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRAI SE+IGKVEL+QGAGAL  ASTSNLGGTL+FFSRDP+E  GG+ +LT GSDNMHR F R E+G+I  LGGLRGY
Sbjct:   44 EVDALIIIGQGQSRQIQTLNSDAIGLQAAGTSALKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAIASENIGKVELAQGAGALGTASTSNLGGTLQFFSRDPSEQMGGELDLTGGSDNMHRVFGRFETGAISQLGGLRGY 213          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A0P0P0N7_9CAUL (TonB-dependent receptor n=1 Tax=Caulobacter henricii TaxID=69395 RepID=A0A0P0P0N7_9CAUL)

HSP 1 Score: 264 bits (674), Expect = 5.320e-81
Identity = 133/171 (77.78%), Postives = 150/171 (87.72%), Query Frame = 1
Query:   25 TEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            T V+A+++ GQGQSRQVQT+ DE IS   AG SPLK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRAI +E+IG+VEL+QGAGAL+ ASTSNLGGTL+FFSRDP++ FGGQ N T GS+ M+R F RL+SGSIE LGGLRGY
Sbjct:   36 TAVDAVIVIGQGQSRQVQTLKDEAISLEAAGTSPLKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAITNENIGRVELAQGAGALATASTSNLGGTLQFFSRDPSKDFGGQLNATGGSEGMYRVFGRLDSGSIEQLGGLRGY 206          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A258D8G9_CAUVI (TonB-dependent receptor n=1 Tax=Caulobacter vibrioides TaxID=155892 RepID=A0A258D8G9_CAUVI)

HSP 1 Score: 263 bits (671), Expect = 7.650e-81
Identity = 132/169 (78.11%), Postives = 149/169 (88.17%), Query Frame = 1
Query:   31 VEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            V+AI++ GQGQSRQVQT+++E I    AG S LK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRAI +E+IG+VEL+QGAGAL  ASTSNLGGTL+FFSRDP ET GGQ +LT GSD+MHRAF R E+G+I+ALGGLRGY
Sbjct:   45 VDAIIVIGQGQSRQVQTLNNEAIGLQAAGTSALKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAIANENIGRVELAQGAGALGTASTSNLGGTLQFFSRDPQETLGGQIDLTAGSDSMHRAFGRFETGAIKALGGLRGY 213          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A0Q6TWW1_9CAUL (TonB-dependent receptor n=2 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A0Q6TWW1_9CAUL)

HSP 1 Score: 263 bits (671), Expect = 1.750e-80
Identity = 132/170 (77.65%), Postives = 147/170 (86.47%), Query Frame = 1
Query:   28 EVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            EV+A+VI GQGQSRQVQTV D+ I    AG S LK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRA+ SE+IG+VEL+QGAGAL  ASTSNLGGTL+FFSRDP +T GG+ ++T GSDNMHR F R E+G+IE LGGLRGY
Sbjct:   47 EVDAVVIIGQGQSRQVQTVKDDAIGLEAAGTSALKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAVASENIGRVELAQGAGALGTASTSNLGGTLQFFSRDPQQTMGGEIDVTGGSDNMHRVFGRFETGAIEQLGGLRGY 216          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A258IR76_9CAUL (TonB-dependent receptor n=4 Tax=unclassified Caulobacter TaxID=2648921 RepID=A0A258IR76_9CAUL)

HSP 1 Score: 262 bits (670), Expect = 1.940e-80
Identity = 133/178 (74.72%), Postives = 154/178 (86.52%), Query Frame = 1
Query:    7 ATVGTA-TEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            AT  TA TEV+A+++ GQGQSRQVQT+ D+ IS   AG SPLK ID LPGVTFQSAD FGAYEWS RISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRAI +E+IG+++L+QGAGAL  ASTSNLGGTL+FFSR P++ FGGQ N+T GSD MHR F R++SG+I+ALGGLRGY
Sbjct:   27 ATPATANTEVDAVIVIGQGQSRQVQTLKDDSISLEAAGTSPLKAIDKLPGVTFQSADAFGAYEWSARISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAITNENIGRIDLAQGAGALGVASTSNLGGTLQFFSRAPSQDFGGQLNVTGGSDQMHRVFGRVDSGAIDALGGLRGY 204          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: D5VFN9_CAUST (TonB-dependent receptor n=4 Tax=Caulobacter TaxID=75 RepID=D5VFN9_CAUST)

HSP 1 Score: 262 bits (670), Expect = 2.290e-80
Identity = 133/179 (74.30%), Postives = 150/179 (83.80%), Query Frame = 1
Query:    1 AAATVGTATEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            AAA     +EV+A++I GQGQSRQ+QT++ + I    AG S LK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRA+ SE+I +VEL+QGAGAL  ASTSNLGGTL+FFSRDP ET GG+ +LT GSDNMHR F R ESG+IE LGGLRGY
Sbjct:   34 AAAAPADTSEVDALIIIGQGQSRQIQTLNSDAIGLQAAGTSALKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAVASENISRVELAQGAGALGTASTSNLGGTLQFFSRDPQETLGGELDLTGGSDNMHRVFARFESGAIEQLGGLRGY 212          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A3Q9IH09_9CAUL (TonB-dependent receptor n=6 Tax=Caulobacter TaxID=75 RepID=A0A3Q9IH09_9CAUL)

HSP 1 Score: 261 bits (667), Expect = 6.400e-80
Identity = 131/170 (77.06%), Postives = 147/170 (86.47%), Query Frame = 1
Query:   28 EVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            EV+A++I GQGQSRQVQT++ E I    AG S LK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRA+ SE+IG+VEL+QGAGAL  ASTSNLGGTL+FFSRDP+ET GG+ +LT GSDNMHR F R E+G+I  LGGLRGY
Sbjct:   43 EVDAVIIIGQGQSRQVQTLNTEAIGLQAAGTSALKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAVASENIGRVELAQGAGALGTASTSNLGGTLQFFSRDPSETMGGEIDLTGGSDNMHRVFGRFETGAISQLGGLRGY 212          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: UPI0019C70D94 (TonB-dependent receptor n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019C70D94)

HSP 1 Score: 261 bits (668), Expect = 6.460e-80
Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 1
Query:   22 ATEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            A EV+A+V+ GQGQSRQVQT+  EQ+    AG SPLK ID LPGVTFQSAD FGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGN+NGLHISRAI SEDIG+VEL+QGAGAL  ASTSNLGGTL+FFSRDP+E FG Q N T GS++M+R F R++SG+I  LGGLRGY
Sbjct:   41 ANEVDAVVVLGQGQSRQVQTLKTEQLLLEAAGSSPLKAIDKLPGVTFQSADAFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNHNGLHISRAIASEDIGRVELAQGAGALGTASTSNLGGTLQFFSRDPSEAFGAQINATAGSESMYRLFGRVDSGAIAGLGGLRGY 212          
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Match: A0A2N5CSA3_9CAUL (TonB-dependent receptor n=5 Tax=Caulobacter TaxID=75 RepID=A0A2N5CSA3_9CAUL)

HSP 1 Score: 259 bits (661), Expect = 4.200e-79
Identity = 128/170 (75.29%), Postives = 146/170 (85.88%), Query Frame = 1
Query:   28 EVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLPGVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLHISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQANLTVGSDNMHRAFLRLESGSIEALGGLRGY 537
            EVEA+V+ GQGQSRQVQ +++E I+T  AG SPLK ID LPGV+FQSADPFGAYEWST +SIRGFNQNQLGFT DGVPLGDMSYGN+NGLHISRAI SE+IGKVEL+QGAG+L  ASTSNLGGTL+F SRDP+E  GGQ NLT GS NMHR F R E+G++E LGGLR +
Sbjct:   37 EVEAVVVIGQGQSRQVQVLNEESIATQAAGTSPLKAIDKLPGVSFQSADPFGAYEWSTSLSIRGFNQNQLGFTRDGVPLGDMSYGNHNGLHISRAIASENIGKVELAQGAGSLGTASTSNLGGTLQFASRDPSEVMGGQVNLTGGSQNMHRVFARFETGALEQLGGLRAF 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52838.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R7LS76_9CAUL3.100e-8474.27TonB-dependent receptor (Fragment) n=4 Tax=Proteob... [more]
A0A2W5UYG3_9CAUL1.120e-8276.47TonB-dependent receptor (Fragment) n=1 Tax=Cauloba... [more]
A0A0P0P0N7_9CAUL5.320e-8177.78TonB-dependent receptor n=1 Tax=Caulobacter henric... [more]
A0A258D8G9_CAUVI7.650e-8178.11TonB-dependent receptor n=1 Tax=Caulobacter vibrio... [more]
A0A0Q6TWW1_9CAUL1.750e-8077.65TonB-dependent receptor n=2 Tax=unclassified Caulo... [more]
A0A258IR76_9CAUL1.940e-8074.72TonB-dependent receptor n=4 Tax=unclassified Caulo... [more]
D5VFN9_CAUST2.290e-8074.30TonB-dependent receptor n=4 Tax=Caulobacter TaxID=... [more]
A0A3Q9IH09_9CAUL6.400e-8077.06TonB-dependent receptor n=6 Tax=Caulobacter TaxID=... [more]
UPI0019C70D946.460e-8076.74TonB-dependent receptor n=1 Tax=Gemmatimonadaceae ... [more]
A0A2N5CSA3_9CAUL4.200e-7975.29TonB-dependent receptor n=5 Tax=Caulobacter TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52838contigP-wetherbeei_contig52838:2..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog509190.Cseg_1272
PFAMsPlug,TonB_dep_Rec
Model size537
Max annot lvl204458|Caulobacterales
KEGG koko:K02014
KEGG TC1.B.14
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.75e-81
EggNOG OGsCOG4774@1|root,COG4774@2|Bacteria,1NR6X@1224|Proteobacteria,2UQQM@28211|Alphaproteobacteria,2KFAY@204458|Caulobacterales
DescriptionTonB-dependent receptor
Cds size537
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.9405437-CDS-P-wetherbeei_contig52838:1..5381683186791.9405437-CDS-P-wetherbeei_contig52838:1..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52838 2..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52838.1.1prot_P-wetherbeei_contig52838.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52838 2..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52838.1.1

>prot_P-wetherbeei_contig52838.1.1 ID=prot_P-wetherbeei_contig52838.1.1|Name=mRNA_P-wetherbeei_contig52838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=179bp
AAATVGTATEVEAIVIYGQGQSRQVQTVSDEQISTAIAGVSPLKVIDMLP
GVTFQSADPFGAYEWSTRISIRGFNQNQLGFTLDGVPLGDMSYGNNNGLH
ISRAIGSEDIGKVELSQGAGALSAASTSNLGGTLRFFSRDPAETFGGQAN
LTVGSDNMHRAFLRLESGSIEALGGLRGY
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mRNA from alignment at P-wetherbeei_contig52838:2..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52838.1.1 ID=mRNA_P-wetherbeei_contig52838.1.1|Name=mRNA_P-wetherbeei_contig52838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig52838:2..538- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCGACCGTCGGAACGGCCACCGAAGTCGAGGCCATCGTGATCTA CGGCCAGGGTCAGAGCCGCCAGGTCCAGACCGTCAGCGACGAGCAGATCT CGACGGCCATCGCCGGCGTCAGCCCGCTGAAGGTCATCGACATGCTGCCG GGCGTGACCTTCCAGTCGGCCGATCCTTTCGGCGCCTATGAATGGTCTAC CCGCATCAGCATTCGCGGCTTCAACCAGAACCAGCTGGGCTTCACACTCG ACGGCGTGCCGCTGGGCGACATGAGCTACGGCAACAACAACGGCCTGCAC ATCAGCCGCGCCATCGGCAGCGAAGACATCGGCAAGGTCGAACTGTCCCA GGGCGCGGGCGCGCTCTCGGCCGCGTCGACCTCGAACCTGGGCGGCACGC TGCGGTTCTTCTCGCGCGATCCGGCCGAGACGTTCGGCGGCCAGGCCAAC CTGACGGTCGGCTCCGACAACATGCACCGGGCCTTCCTGCGGCTGGAGTC GGGCTCGATCGAAGCCCTCGGCGGCTTGCGCGGCTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52838:2..538-

>mRNA_P-wetherbeei_contig52838.1.1 ID=mRNA_P-wetherbeei_contig52838.1.1|Name=mRNA_P-wetherbeei_contig52838.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig52838:2..538- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCGACCGTCGGAACGGCCACCGAAGTCGAGGCCATCGTGATCTA
CGGCCAGGGTCAGAGCCGCCAGGTCCAGACCGTCAGCGACGAGCAGATCT
CGACGGCCATCGCCGGCGTCAGCCCGCTGAAGGTCATCGACATGCTGCCG
GGCGTGACCTTCCAGTCGGCCGATCCTTTCGGCGCCTATGAATGGTCTAC
CCGCATCAGCATTCGCGGCTTCAACCAGAACCAGCTGGGCTTCACACTCG
ACGGCGTGCCGCTGGGCGACATGAGCTACGGCAACAACAACGGCCTGCAC
ATCAGCCGCGCCATCGGCAGCGAAGACATCGGCAAGGTCGAACTGTCCCA
GGGCGCGGGCGCGCTCTCGGCCGCGTCGACCTCGAACCTGGGCGGCACGC
TGCGGTTCTTCTCGCGCGATCCGGCCGAGACGTTCGGCGGCCAGGCCAAC
CTGACGGTCGGCTCCGACAACATGCACCGGGCCTTCCTGCGGCTGGAGTC
GGGCTCGATCGAAGCCCTCGGCGGCTTGCGCGGCTAC
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