mRNA_P-wetherbeei_contig5282.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5282.1.1
Unique NamemRNA_P-wetherbeei_contig5282.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A836CGA0_9STRA (Tubby C-terminal-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.890e-19
Identity = 65/195 (33.33%), Postives = 80/195 (41.03%), Query Frame = 2 
Query:    2 NDIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            +DI+V+ETK+PSWN  + AW LNFNGRV+                                                                                                  IPSKKNFL AP+  G    ++E G+G VLLRHGKMSK+RFSVDF HPLPP++ALAV  STF +KR+VT
Sbjct:  378 SDIMVLETKRPSWNPALEAWVLNFNGRVR--------------------------------------------------------------------------------------------------IPSKKNFLGAPER-GNLAMETEFGDGAVLLRHGKMSKARFSVDFRHPLPPIVALAVCCSTFAQKRVVT 473
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: D7G017_ECTSI (Tub domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G017_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-15
Identity = 60/195 (30.77%), Postives = 73/195 (37.44%), Query Frame = 2 
Query:    2 NDIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            +DI+  ET  PSWNE + AWTLNFNGRVK                                                                                                  IPSKKNFL +P+  G    + + GEG+V +RHGKMSKSRFSVDF HP+ P++AL V  STF  K +VT
Sbjct:  458 SDIITFETLSPSWNEVLHAWTLNFNGRVK--------------------------------------------------------------------------------------------------IPSKKNFLVSPEK-GNLVMEQDFGEGKVHIRHGKMSKSRFSVDFRHPVSPIVALGVCCSTFANKMVVT 553
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A6V1UG96_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UG96_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 1.910e-12
Identity = 57/194 (29.38%), Postives = 74/194 (38.14%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D+++ ETK+P WNE++ AWTLNFNGRVK                                                                                                  IPSKKNF    ++D    + SE GE  V LR GKM+KSRFS+DF HPL P++ALA+ +S+F +K LVT
Sbjct:  330 DLMIFETKRPVWNEQIQAWTLNFNGRVK--------------------------------------------------------------------------------------------------IPSKKNFFIQAELDNHIME-SEFGED-VYLRFGKMTKSRFSLDFRHPLSPVVALAIAASSFADKMLVT 423
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A8K1C842_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C842_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 1.160e-11
Identity = 54/194 (27.84%), Postives = 70/194 (36.08%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++V ET+KPSWNE +GAWTLNFNGRVK                                                                                                  +PSKKNFL   + +G    ++E GE    LR GK+SK+RFS+DF  P+ P +ALA+ +S F  K  VT
Sbjct:  549 DLLVFETRKPSWNEELGAWTLNFNGRVK--------------------------------------------------------------------------------------------------LPSKKNFLIVAE-EGNENMEAEFGEQTSYLRFGKVSKTRFSLDFQAPITPFIALAIATSAFARKMAVT 643
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: K3X577_GLOUD (PDZ domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X577_GLOUD)

HSP 1 Score: 71.2 bits (173), Expect = 3.230e-10
Identity = 52/194 (26.80%), Postives = 71/194 (36.60%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++  ETKKP+WN+ +GAWTLNF+GRVK                                                                                                  + SKKNFL  P+  G    ++E  + RV LR GK+SK+RFS+D+  P+ PLLA+A+V S+F  K  VT
Sbjct:  665 DLLTFETKKPAWNDELGAWTLNFHGRVK--------------------------------------------------------------------------------------------------LASKKNFLLVPE-QGNEQMETEFADERVYLRFGKVSKTRFSLDYQAPISPLLAVAIVCSSFAHKIAVT 759
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A2P4XGA5_9STRA (ABC Superfamily n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGA5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.620e-10
Identity = 53/194 (27.32%), Postives = 67/194 (34.54%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++V ETK+PSWNE +GAWTLNF GRVKV                                                                                                   SKKNFL          D+ E+    V+LR GK+SK+RF++D+  PL P+ ALAV  S F  KR+VT
Sbjct:  196 DLLVFETKQPSWNEELGAWTLNFQGRVKV--------------------------------------------------------------------------------------------------ASKKNFLLVGNDTSENGDEQEI----VVLRFGKVSKTRFTLDYAAPLAPIQALAVACSAFANKRVVT 287
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A5D6XV38_9STRA (PDZ domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV38_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.410e-9
Identity = 51/194 (26.29%), Postives = 71/194 (36.60%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++  ETKKP+WN+ +GAWTLNF+GRVK                                                                                                  + SKKNFL  P+  G    ++E  + RV LR GK++KSRFS+D+  P+ P+LALA+V ++F  K  VT
Sbjct:  653 DLLTFETKKPAWNDELGAWTLNFHGRVK--------------------------------------------------------------------------------------------------LASKKNFLLVPE-QGSAHMEAEFPDERVFLRFGKVAKSRFSLDYQAPICPMLALAIVCTSFAHKIAVT 747
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: D0P3I1_PHYIT (ATP-binding Cassette (ABC) superfamily n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P3I1_PHYIT)

HSP 1 Score: 65.9 bits (159), Expect = 1.790e-8
Identity = 54/196 (27.55%), Postives = 68/196 (34.69%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVL--LRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++V +TK+PSWNE +GAWTLNF GRVKV                                                                                                   SKKNFL        T++ +E GE   +  LR GK+SK+RFS+D+  PL P+ ALAV  S F  KR VT
Sbjct:  466 DLLVFDTKQPSWNEELGAWTLNFQGRVKV--------------------------------------------------------------------------------------------------ASKKNFLLV------TSETNENGEDEEITALRFGKVSKTRFSLDYAAPLAPIQALAVACSAFANKRAVT 557
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A833SSX8_PHYIN (Tub family n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SSX8_PHYIN)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-8
Identity = 54/196 (27.55%), Postives = 68/196 (34.69%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVL--LRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++V +TK+PSWNE +GAWTLNF GRVKV                                                                                                   SKKNFL        T++ +E GE   +  LR GK+SK+RFS+D+  PL P+ ALAV  S F  KR VT
Sbjct:  644 DLLVFDTKQPSWNEELGAWTLNFQGRVKV--------------------------------------------------------------------------------------------------ASKKNFLLV------TSETNENGEDEEITALRFGKVSKTRFSLDYAAPLAPIQALAVACSAFANKRAVT 735
[Close]
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Match: A0A225X0F5_9STRA (ABC transporter n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F5_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.670e-8
Identity = 52/194 (26.80%), Postives = 67/194 (34.54%), Query Frame = 2 
Query:    5 DIVVMETKKPSWNERMGAWTLNFNGRVKVWLLKRVWTYFVAAMDIVCVGLAGGASTRARFRQTVYARRAVGLAVDILIFVCRMTESPLCRLLTSP*KTLTLSGWPAVPLALADCFPRIFPPALPAQIPSKKNFLCAPKVDGGTTDQSELGEGRVLLRHGKMSKSRFSVDFCHPLPPLLALAVVSSTFCEKRLVT 586
            D++V ETK+PSWNE +GAWTLNF GRVKV                                                                                                   SKKNFL      G  T+++   +    LR GK+SK+RF++D+  PL P+ ALAV  S F  KR+VT
Sbjct:  639 DLLVFETKQPSWNEELGAWTLNFQGRVKV--------------------------------------------------------------------------------------------------ASKKNFLLV----GNDTNENGEEQEITALRFGKVSKTRFTLDYAAPLAPVQALAVACSAFANKRVVT 730
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5282.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836CGA0_9STRA3.890e-1933.33Tubby C-terminal-like domain-containing protein (F... [more]
D7G017_ECTSI2.460e-1530.77Tub domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1UG96_HETAK1.910e-1229.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1C842_PYTOL1.160e-1127.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X577_GLOUD3.230e-1026.80PDZ domain-containing protein n=1 Tax=Globisporang... [more]
A0A2P4XGA5_9STRA9.620e-1027.32ABC Superfamily n=1 Tax=Phytophthora palmivora var... [more]
A0A5D6XV38_9STRA1.410e-926.29PDZ domain-containing protein n=1 Tax=Pythium bras... [more]
D0P3I1_PHYIT1.790e-827.55ATP-binding Cassette (ABC) superfamily n=1 Tax=Phy... [more]
A0A833SSX8_PHYIN2.000e-827.55Tub family n=1 Tax=Phytophthora infestans TaxID=47... [more]
A0A225X0F5_9STRA2.670e-826.80ABC transporter n=1 Tax=Phytophthora megakarya Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5282contigP-wetherbeei_contig5282:684..1535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size852
Hectar predicted targeting categoryother localisation
Exons1
Cds size807
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.7928238-UTR-P-wetherbeei_contig5282:683..7281683186791.7928238-UTR-P-wetherbeei_contig5282:683..728Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5282 684..728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.8015163-CDS-P-wetherbeei_contig5282:728..15351683186791.8015163-CDS-P-wetherbeei_contig5282:728..1535Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5282 729..1535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5282.1.1prot_P-wetherbeei_contig5282.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5282 729..1535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5282.1.1

>prot_P-wetherbeei_contig5282.1.1 ID=prot_P-wetherbeei_contig5282.1.1|Name=mRNA_P-wetherbeei_contig5282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=269bp
ERHRGDGDQEAVVERANGRVDAQLQRTRQGVAFEESLDLFCSSDGYCVRR
VGWWGINSRKVSANGVCAESGRIGRRYLDIRLSDDGISVVPLANLAVKDL
DSFRLAGGPACARRLLPPHFSACSARTDPEQKELSVRAQGGRRHNGSVGA
RGGAGAATAWQDEQVALQRRLLPPAPAAARPRRRILHLLREAPRHLSDLL
FHPIWRLADWFGWIDCFAGSSDSRGGSDGGCRCGWRRCWRLQRRGDSPAA
ENGGNSGWRRFSGQSKIF*
back to top

mRNA from alignment at P-wetherbeei_contig5282:684..1535-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5282.1.1 ID=mRNA_P-wetherbeei_contig5282.1.1|Name=mRNA_P-wetherbeei_contig5282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig5282:684..1535- (Phaeothamnion wetherbeei SAG_119_79)
GAACGACATCGTGGTGATGGAGACCAAGAAGCCGTCGTGGAACGAGCGAA
TGGGCGCGTGGACGCTCAACTTCAACGGACGCGTCAAGGTGTGGCTTTTG
AAGAGAGTCTGGACTTATTTTGTAGCAGCGATGGATATTGTGTGCGTCGG
GTTGGCTGGTGGGGCATCAACTCGCGCAAGGTTTCGGCAAACGGTGTATG
CGCGGAGAGCGGTCGGATTGGCCGTCGATATCTTGATATTCGTCTGTCGG
ATGACGGAATCTCCGTTGTGCCGCTTGCTAACCTCGCCGTGAAAGACCTT
GACTCTTTCCGGCTGGCCGGCGGTCCCGCTTGCGCTCGCCGACTGCTTCC
CCCGCATTTTTCCGCCTGCTCTGCCCGCACAGATCCCGAGCAAAAAGAAC
TTTCTGTGCGCGCCCAAGGTGGACGGCGGCACAACGGATCAGTCGGAGCT
CGGGGAGGGGCGGGTGCTGCTACGGCATGGCAAGATGAGCAAGTCGCGCT
TCAGCGTCGACTTCTGCCACCCGCTCCCGCCGCTGCTCGCCCTCGCCGTC
GTATCCTCCACCTTTTGCGAGAAGCGCCTCGTCACCTGAGCGACCTTTTA
TTTCATCCGATTTGGAGACTGGCGGATTGGTTTGGGTGGATTGACTGTTT
CGCAGGCAGCAGCGACTCCCGCGGTGGTAGTGACGGTGGCTGCCGCTGCG
GCTGGCGAAGATGCTGGCGGCTGCAGCGGCGGGGGGACTCGCCGGCGGCG
GAAAACGGTGGCAACAGCGGTTGGCGGCGATTTTCTGGTCAATCCAAGAT
TTTCTAGGACAGCTTTCAATTCAGAAGACCATTTTGACTTTCGTGGACAT
GC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5282:684..1535-

>mRNA_P-wetherbeei_contig5282.1.1 ID=mRNA_P-wetherbeei_contig5282.1.1|Name=mRNA_P-wetherbeei_contig5282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=807bp|location=Sequence derived from alignment at P-wetherbeei_contig5282:684..1535- (Phaeothamnion wetherbeei SAG_119_79)
GAACGACATCGTGGTGATGGAGACCAAGAAGCCGTCGTGGAACGAGCGAA
TGGGCGCGTGGACGCTCAACTTCAACGGACGCGTCAAGGTGTGGCTTTTG
AAGAGAGTCTGGACTTATTTTGTAGCAGCGATGGATATTGTGTGCGTCGG
GTTGGCTGGTGGGGCATCAACTCGCGCAAGGTTTCGGCAAACGGTGTATG
CGCGGAGAGCGGTCGGATTGGCCGTCGATATCTTGATATTCGTCTGTCGG
ATGACGGAATCTCCGTTGTGCCGCTTGCTAACCTCGCCGTGAAAGACCTT
GACTCTTTCCGGCTGGCCGGCGGTCCCGCTTGCGCTCGCCGACTGCTTCC
CCCGCATTTTTCCGCCTGCTCTGCCCGCACAGATCCCGAGCAAAAAGAAC
TTTCTGTGCGCGCCCAAGGTGGACGGCGGCACAACGGATCAGTCGGAGCT
CGGGGAGGGGCGGGTGCTGCTACGGCATGGCAAGATGAGCAAGTCGCGCT
TCAGCGTCGACTTCTGCCACCCGCTCCCGCCGCTGCTCGCCCTCGCCGTC
GTATCCTCCACCTTTTGCGAGAAGCGCCTCGTCACCTGAGCGACCTTTTA
TTTCATCCGATTTGGAGACTGGCGGATTGGTTTGGGTGGATTGACTGTTT
CGCAGGCAGCAGCGACTCCCGCGGTGGTAGTGACGGTGGCTGCCGCTGCG
GCTGGCGAAGATGCTGGCGGCTGCAGCGGCGGGGGGACTCGCCGGCGGCG
GAAAACGGTGGCAACAGCGGTTGGCGGCGATTTTCTGGTCAATCCAAGAT
TTTCTAG
back to top