mRNA_P-wetherbeei_contig52796.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52796.1.1
Unique NamemRNA_P-wetherbeei_contig52796.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y1ZNJ8_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZNJ8_ARAVE)

HSP 1 Score: 112 bits (281), Expect = 1.880e-27
Identity = 62/135 (45.93%), Postives = 82/135 (60.74%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI  +V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ NR+S
Sbjct:   63 IENVLEKFNMQDAKTVKTPLDPNVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHSVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KKPLVGYADADWASDITNRKS 189
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BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2S606_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2S606_ARAVE)

HSP 1 Score: 111 bits (278), Expect = 5.090e-26
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI  AV  LS+F  NPG PHW A+  +L+YLKGT  +GL +              IGFADADWA D+ +R+S
Sbjct:  388 IENILEKFIMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHAVSYLSQFNENPGMPHWTASKRVLKYLKGTKNRGLTFRPT-------KRPLIGFADADWASDITDRKS 514
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BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2MZF4_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2MZF4_ARAVE)

HSP 1 Score: 109 bits (273), Expect = 5.430e-26
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct:  237 IENVLEKFNMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKYRGLTFRPT-------KKPLVGYADADWASDITDRKS 363
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2SE01_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2SE01_ARAVE)

HSP 1 Score: 110 bits (275), Expect = 9.810e-26
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct:  236 IENVLEKFNMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KKPLVGYADADWASDITDRKS 362
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2A9D6_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2A9D6_ARAVE)

HSP 1 Score: 103 bits (258), Expect = 1.120e-25
Identity = 58/126 (46.03%), Postives = 76/126 (60.32%), Query Frame = 1 
Query:   28 MSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct:    1 MQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KKPLVGYADADWASDITDRKS 118
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2KRD5_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KRD5_ARAVE)

HSP 1 Score: 110 bits (276), Expect = 1.290e-25
Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI  +V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct: 1060 IENVLEKFNMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHSVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KRPLVGYADADWASDITDRKS 1186
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: UPI00143DEBCB (secreted RxLR effector protein 161-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DEBCB)

HSP 1 Score: 105 bits (262), Expect = 1.370e-25
Identity = 58/135 (42.96%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            + ++L RF M D  PV TP+ P  +  +  M+P+T  E   M++ P+R L G+++YL  +TRPDI  AV ALS+F  NPG  HW AA  +LRYLK T K  +++S+            IGF+DADW  ++D+RRS
Sbjct:    7 VQDVLKRFNMEDCKPVATPINPAVKL-SKEMSPTTDEEKKGMSQIPYRNLTGSLMYLPTSTRPDIAYAVSALSQFNENPGEEHWKAAKRVLRYLKKTEKMEIVFSETGE-------KLIGFSDADWGANIDDRRS 133
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2AQJ8_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2AQJ8_ARAVE)

HSP 1 Score: 110 bits (275), Expect = 1.750e-25
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct: 1069 IENVLEKFNMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KKPLVGYADADWASDITDRKS 1195
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2C1S9_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2C1S9_ARAVE)

HSP 1 Score: 110 bits (274), Expect = 2.360e-25
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct:  791 IENVLEKFSMQDAKTVKTPLDPSVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKNRGLTFRPT-------KKPLVGYADADWASDITDRKS 917
[Close]
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Match: A0A4Y2PBD7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2PBD7_ARAVE)

HSP 1 Score: 110 bits (274), Expect = 2.370e-25
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1 
Query:    1 ITELLARFRMSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAVTTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAAIGAAVSGAAIGFADADWARDVDNRRS 405
            I  +L +F M DA  V TP+ P  +     M P T AE AEM+  P+R LIG+++YLA+ TRPDI   V  LS+F  NPG PHW AA  +L+YLKGT  +GL +              +G+ADADWA D+ +R+S
Sbjct:  876 IENVLEKFNMQDAKTVKTPLDPNVKLTKE-MCPKTEAEKAEMSLYPYRSLIGSLMYLAICTRPDICHTVSYLSQFNENPGMPHWTAAKRVLKYLKGTKHRGLTFRPT-------KKPLVGYADADWASDITDRKS 1002
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1ZNJ8_ARAVE1.880e-2745.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2S606_ARAVE5.090e-2646.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2MZF4_ARAVE5.430e-2645.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2SE01_ARAVE9.810e-2645.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2A9D6_ARAVE1.120e-2546.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2KRD5_ARAVE1.290e-2545.19Retrovirus-related Pol polyprotein from transposon... [more]
UPI00143DEBCB1.370e-2542.96secreted RxLR effector protein 161-like n=1 Tax=Be... [more]
A0A4Y2AQJ8_ARAVE1.750e-2545.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2C1S9_ARAVE2.360e-2545.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2PBD7_ARAVE2.370e-2545.19Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52796contigP-wetherbeei_contig52796:98..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3750.XP_008370919.1
PFAMsRVT_2
Model size405
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.17e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3894V@33090|Viridiplantae,3GY0Z@35493|Streptophyta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size378
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.186259-UTR-P-wetherbeei_contig52796:97..1241683186791.186259-UTR-P-wetherbeei_contig52796:97..124Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52796 98..124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.1954286-CDS-P-wetherbeei_contig52796:124..5021683186791.1954286-CDS-P-wetherbeei_contig52796:124..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52796 125..502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52796.1.1prot_P-wetherbeei_contig52796.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52796 125..502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52796.1.1

>prot_P-wetherbeei_contig52796.1.1 ID=prot_P-wetherbeei_contig52796.1.1|Name=mRNA_P-wetherbeei_contig52796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MSDAWPVLTPVCPGAEAPNAAMAPSTSAEAAEMARKPFRELIGTVLYLAV
TTRPDIFDAVRALSRFRNNPGHPHWLAALWLLRYLKGTLKKGLLYSQNAA
IGAAVSGAAIGFADADWARDVDNRRS
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mRNA from alignment at P-wetherbeei_contig52796:98..502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52796.1.1 ID=mRNA_P-wetherbeei_contig52796.1.1|Name=mRNA_P-wetherbeei_contig52796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig52796:98..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATCACGGAACTGCTGGCGCGTTTCCGCATGAGCGACGCCTGGCCGGTATT
GACGCCGGTGTGCCCGGGGGCCGAAGCGCCGAATGCGGCGATGGCGCCGT
CGACATCGGCGGAAGCGGCAGAGATGGCTCGTAAGCCATTCCGTGAGCTG
ATTGGCACTGTGCTGTATCTGGCCGTCACGACGCGGCCAGACATCTTTGA
TGCGGTACGAGCGCTTTCCCGTTTCCGCAACAACCCTGGTCACCCGCACT
GGCTGGCGGCGCTCTGGCTTCTCCGCTATCTGAAAGGCACTTTGAAGAAG
GGGCTATTGTATAGTCAGAATGCTGCCATCGGCGCGGCGGTCTCGGGGGC
CGCCATCGGCTTTGCGGACGCAGACTGGGCCCGCGACGTAGACAACCGCC
GCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52796:98..502+

>mRNA_P-wetherbeei_contig52796.1.1 ID=mRNA_P-wetherbeei_contig52796.1.1|Name=mRNA_P-wetherbeei_contig52796.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig52796:98..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGACGCCTGGCCGGTATTGACGCCGGTGTGCCCGGGGGCCGAAGC
GCCGAATGCGGCGATGGCGCCGTCGACATCGGCGGAAGCGGCAGAGATGG
CTCGTAAGCCATTCCGTGAGCTGATTGGCACTGTGCTGTATCTGGCCGTC
ACGACGCGGCCAGACATCTTTGATGCGGTACGAGCGCTTTCCCGTTTCCG
CAACAACCCTGGTCACCCGCACTGGCTGGCGGCGCTCTGGCTTCTCCGCT
ATCTGAAAGGCACTTTGAAGAAGGGGCTATTGTATAGTCAGAATGCTGCC
ATCGGCGCGGCGGTCTCGGGGGCCGCCATCGGCTTTGCGGACGCAGACTG
GGCCCGCGACGTAGACAACCGCCGCTCC
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