mRNA_P-wetherbeei_contig5276.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5276.4.1
Unique NamemRNA_P-wetherbeei_contig5276.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A3C0TUE0_9PROT (Short chain dehydrogenase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUE0_9PROT)

HSP 1 Score: 224 bits (571), Expect = 7.140e-72
Identity = 110/129 (85.27%), Postives = 118/129 (91.47%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGMED 387
            A Q P    GNVINI+DQRVWRLTPRY+SYTLSKSALWTLT+TMAMALAP IRVNG+GPGPTLPN+ QD AQFARQAGSTIL RGAGL+EI+AA RFILASPSMTGQMIALDGGQHLAWETPDI+GMED
Sbjct:  131 ARQLPKGAQGNVINILDQRVWRLTPRYLSYTLSKSALWTLTRTMAMALAPVIRVNGIGPGPTLPNDQQDAAQFARQAGSTILRRGAGLDEIAAAARFILASPSMTGQMIALDGGQHLAWETPDIVGMED 259          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A2A5EU54_9HYPH (Short chain dehydrogenase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EU54_9HYPH)

HSP 1 Score: 190 bits (482), Expect = 2.310e-58
Identity = 90/124 (72.58%), Postives = 105/124 (84.68%), Query Frame = 1
Query:   13 PHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGME 384
            P   +GN+IN++DQRVWRLTPR++SYT++KS LWTLTQT+A ALAP IRVNG+GPGPTL N+ Q E  F  QA +T+LGRG  LEEI AAVRFILASP+MTGQMIALDGGQHLAWETPD +G E
Sbjct:  137 PEGTSGNIINMIDQRVWRLTPRFLSYTVAKSGLWTLTQTLAQALAPKIRVNGIGPGPTLCNDRQSETDFQAQAAATLLGRGPELEEICAAVRFILASPAMTGQMIALDGGQHLAWETPDAVGPE 260          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A2Z4UKA5_9HYPH (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2Z4UKA5_9HYPH)

HSP 1 Score: 186 bits (471), Expect = 8.940e-57
Identity = 90/128 (70.31%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGME 384
            A Q P +  GN+INI+DQRVWRLTPR++SYT SK+ LWTLTQT+A ALAP IRVNG+GPGPTL N+ Q  A F  QA ST+L R   +EEI AAVRFILASP+MTGQMIALD GQHLAWETPD +G E
Sbjct:  127 AKQLPESNAGNIINIIDQRVWRLTPRFLSYTASKAGLWTLTQTLAQALAPKIRVNGIGPGPTLSNDRQSSADFEAQATSTLLQRQISMEEICAAVRFILASPAMTGQMIALDSGQHLAWETPDAIGPE 254          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A081BD53_9HYPH (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BD53_9HYPH)

HSP 1 Score: 185 bits (470), Expect = 1.310e-56
Identity = 87/129 (67.44%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGMED 387
            A+Q P    GN+INI+DQRVWRLTPR+ SYTLSK+ LWT+TQT+A ALAP IRVNG+GPGPTL N  Q++A F RQ  + +L RG  L EI+AA+RFIL SPS+TGQMIALDGGQHLAWETPD++G+ +
Sbjct:  127 AAQLPDGAQGNIINIIDQRVWRLTPRFFSYTLSKAGLWTMTQTLAQALAPRIRVNGIGPGPTLKNARQEDADFTRQQEALLLRRGPALGEITAAIRFILESPSLTGQMIALDGGQHLAWETPDVVGIPE 255          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A2D8XG93_9HYPH (Short chain dehydrogenase n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D8XG93_9HYPH)

HSP 1 Score: 181 bits (458), Expect = 8.310e-55
Identity = 88/128 (68.75%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGME 384
            A Q P + +GN+INI+DQRVWRLTPR++SYT SK+ LWTLTQT+A +LAP IRVNG+GPGPTL N+ Q  A F  Q  ST L R    EEI AAVRFILASP+MTGQMIALD GQHLAWETPD +G E
Sbjct:  127 AKQLPESNSGNIINIIDQRVWRLTPRFLSYTTSKAGLWTLTQTLAQSLAPKIRVNGIGPGPTLSNDRQSNADFQAQVASTPLQRQISTEEIRAAVRFILASPAMTGQMIALDSGQHLAWETPDAVGPE 254          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A2N3E0Y1_9PROT (Short-chain dehydrogenase (Fragment) n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E0Y1_9PROT)

HSP 1 Score: 177 bits (450), Expect = 9.760e-55
Identity = 85/129 (65.89%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGMED 387
            A+Q P    GN++NI+DQRVW  TPR+ SYT+SK ALW +TQ MA +LAP IRVNG+GPGPTL N  Q  A F RQ  +TILGRG   EEI  A+RFILASP+MTGQMIALDGGQHLAWETPD++G+ +
Sbjct:   40 AAQLPAGIEGNIVNIVDQRVWAPTPRFFSYTISKMALWDMTQVMARSLAPRIRVNGIGPGPTLANARQSAADFERQTRATILGRGTTPEEICTALRFILASPAMTGQMIALDGGQHLAWETPDVIGISE 168          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A836TQ82_9PROT (SDR family oxidoreductase n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TQ82_9PROT)

HSP 1 Score: 180 bits (457), Expect = 1.180e-54
Identity = 86/117 (73.50%), Postives = 104/117 (88.89%), Query Frame = 1
Query:   19 AQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPD 369
            A  GNVINI+DQRVW+LTP ++SYT+SK+ALWTLTQT+AMALAP IRVNGVGPGPTLP+  Q +AQFA+Q  ST+L RGA  EEI AA++FIL++PSMTGQMIALDGGQHLAW++P+
Sbjct:  132 ADGGNVINILDQRVWKLTPFFLSYTVSKAALWTLTQTLAMALAPGIRVNGVGPGPTLPSPRQTDAQFAQQCASTLLQRGASPEEICAAIQFILSTPSMTGQMIALDGGQHLAWQSPE 248          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A7HVF9_PARL1 (Short-chain dehydrogenase/reductase SDR n=2 Tax=Parvibaculum lavamentivorans TaxID=256618 RepID=A7HVF9_PARL1)

HSP 1 Score: 179 bits (455), Expect = 2.510e-54
Identity = 85/129 (65.89%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGMED 387
            A+Q P    GN++NI+DQRVW  TP+++SYTLSK ALW +TQ +A +LAP IRVNG+GPGPTL N+ Q  A F RQ  STILGRG   EEI AA+RFILA+P+MTGQMIALDGGQHLAWETPD+ G+ +
Sbjct:  128 AAQLPAGAKGNIVNIIDQRVWAPTPKFLSYTLSKMALWDMTQVLARSLAPHIRVNGIGPGPTLANQRQSAADFERQTASTILGRGTTPEEICAALRFILAAPAMTGQMIALDGGQHLAWETPDVTGISE 256          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A353LSQ4_9PROT (Short chain dehydrogenase (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LSQ4_9PROT)

HSP 1 Score: 176 bits (446), Expect = 8.150e-54
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGMED 387
            A+Q P    GNVINI+DQRVWRLTPR+ SYTLSK+ LWT+TQT A ALAP IRVN + PGPTL N  Q    FA Q  + +L +GA LEE  AAVRFILA+ SMTGQMIALDGGQHLAWETPD+ G+++
Sbjct:   63 AAQLPEPMRGNVINIIDQRVWRLTPRFFSYTLSKAGLWTMTQTAAQALAPRIRVNAIAPGPTLRNARQSAEDFAAQEKNVLLQQGAALEEFGAAVRFILAAQSMTGQMIALDGGQHLAWETPDVHGLDE 191          
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Match: A0A2E5BTJ2_9HYPH (Short chain dehydrogenase n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BTJ2_9HYPH)

HSP 1 Score: 177 bits (449), Expect = 1.860e-53
Identity = 84/127 (66.14%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    4 SQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAPAIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILASPSMTGQMIALDGGQHLAWETPDILGME 384
            +Q P  Q GN+IN++DQRVWRLTPR++SYT SK+ LWTLTQT+A  LAP +RVN +GPGP L NE Q EA F  Q  +T+L RG  L+EI  A+RFILA+PSMTGQMIALDGGQHLAW TPD +G E
Sbjct:  127 NQLPRHQKGNIINLIDQRVWRLTPRFLSYTASKAGLWTLTQTLAQGLAPHVRVNAIGPGPVLTNERQKEADFEAQVKATLLQRGPELDEICQAIRFILAAPSMTGQMIALDGGQHLAWATPDAIGPE 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5276.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUE0_9PROT7.140e-7285.27Short chain dehydrogenase n=1 Tax=Alphaproteobacte... [more]
A0A2A5EU54_9HYPH2.310e-5872.58Short chain dehydrogenase n=1 Tax=Rhodobiaceae bac... [more]
A0A2Z4UKA5_9HYPH8.940e-5770.313-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A081BD53_9HYPH1.310e-5667.44Short-chain dehydrogenase/reductase SDR n=1 Tax=Te... [more]
A0A2D8XG93_9HYPH8.310e-5568.75Short chain dehydrogenase n=1 Tax=Parvibaculum sp.... [more]
A0A2N3E0Y1_9PROT9.760e-5565.89Short-chain dehydrogenase (Fragment) n=1 Tax=Alpha... [more]
A0A836TQ82_9PROT1.180e-5473.50SDR family oxidoreductase n=1 Tax=Sneathiellales b... [more]
A7HVF9_PARL12.510e-5465.89Short-chain dehydrogenase/reductase SDR n=2 Tax=Pa... [more]
A0A353LSQ4_9PROT8.150e-5466.67Short chain dehydrogenase (Fragment) n=2 Tax=Alpha... [more]
A0A2E5BTJ2_9HYPH1.860e-5366.14Short chain dehydrogenase n=1 Tax=Rhodobiaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5276contigP-wetherbeei_contig5276:3540..3929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1282876.BAOK01000001_gene1240
Preferred nameptr1
PFAMsadh_short,adh_short_C2
Model size390
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-57
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1MUUV@1224|Proteobacteria,2TR0A@28211|Alphaproteobacteria,4BQ4Q@82117|unclassified Alphaproteobacteria
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size390
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.7723217-CDS-P-wetherbeei_contig5276:3539..39291683186790.7723217-CDS-P-wetherbeei_contig5276:3539..3929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5276 3540..3929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5276.4.1prot_P-wetherbeei_contig5276.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5276 3540..3929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5276.4.1

>prot_P-wetherbeei_contig5276.4.1 ID=prot_P-wetherbeei_contig5276.4.1|Name=mRNA_P-wetherbeei_contig5276.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
ASQHPHAQTGNVINIMDQRVWRLTPRYISYTLSKSALWTLTQTMAMALAP
AIRVNGVGPGPTLPNEYQDEAQFARQAGSTILGRGAGLEEISAAVRFILA
SPSMTGQMIALDGGQHLAWETPDILGMED*
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mRNA from alignment at P-wetherbeei_contig5276:3540..3929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5276.4.1 ID=mRNA_P-wetherbeei_contig5276.4.1|Name=mRNA_P-wetherbeei_contig5276.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig5276:3540..3929- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGTCAGCACCCGCACGCACAGACAGGCAATGTCATCAATATTATGGA TCAGCGGGTATGGCGGCTGACACCGCGTTATATTTCCTATACACTCAGCA AAAGCGCATTGTGGACCCTGACGCAAACCATGGCCATGGCGCTGGCCCCC GCCATCCGGGTGAATGGCGTCGGCCCCGGCCCGACCCTGCCCAACGAATA TCAGGACGAGGCGCAGTTCGCCCGCCAGGCCGGTTCGACCATTCTGGGGC GCGGCGCCGGGCTGGAGGAAATATCGGCGGCGGTGCGCTTTATTCTGGCG TCGCCTTCCATGACCGGACAAATGATTGCGCTGGATGGCGGCCAGCATCT GGCCTGGGAAACCCCCGATATTCTGGGGATGGAGGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5276:3540..3929-

>mRNA_P-wetherbeei_contig5276.4.1 ID=mRNA_P-wetherbeei_contig5276.4.1|Name=mRNA_P-wetherbeei_contig5276.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig5276:3540..3929- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGTCAGCACCCGCACGCACAGACAGGCAATGTCATCAATATTATGGA
TCAGCGGGTATGGCGGCTGACACCGCGTTATATTTCCTATACACTCAGCA
AAAGCGCATTGTGGACCCTGACGCAAACCATGGCCATGGCGCTGGCCCCC
GCCATCCGGGTGAATGGCGTCGGCCCCGGCCCGACCCTGCCCAACGAATA
TCAGGACGAGGCGCAGTTCGCCCGCCAGGCCGGTTCGACCATTCTGGGGC
GCGGCGCCGGGCTGGAGGAAATATCGGCGGCGGTGCGCTTTATTCTGGCG
TCGCCTTCCATGACCGGACAAATGATTGCGCTGGATGGCGGCCAGCATCT
GGCCTGGGAAACCCCCGATATTCTGGGGATGGAGGATTAG
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