mRNA_P-wetherbeei_contig52759.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52759.2.1
Unique NamemRNA_P-wetherbeei_contig52759.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: UPI0019EAE016 (Uncharacterized protein n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI0019EAE016)

HSP 1 Score: 157 bits (396), Expect = 5.150e-47
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1
Query:    4 LKTFITICFFLCFTVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            +K  I   F  C  +  +QTD  R +++NIK N+AIEGYDP+SYFDG+P EG+S     YKGITY FSS  N AKFK +P+ YEPAYGGWCAYAMGE+G+KVK+DP+T+ I++G
Sbjct:    1 MKKLILFAFLFCVNLVLAQTDNTRVRNFNIKKNIAIEGYDPISYFDGKPKEGESKFVSSYKGITYFFSSADNAAKFKASPERYEPAYGGWCAYAMGESGDKVKIDPQTFKIIEG 114          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A7Y4XQB4_9BACT (YHS domain-containing protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4XQB4_9BACT)

HSP 1 Score: 154 bits (390), Expect = 4.480e-46
Identity = 66/101 (65.35%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   43 TVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            T  ++Q+D  R K++N+K  +AIEGYDPVSYFD  P+EG+S+I   YKGITY F+S AN  KFK +P+ YEPAYGGWCA+AMGENGEKVK+DPETY I+DG
Sbjct:   16 TFAFAQSDDARKKNFNVKKTIAIEGYDPVSYFDNRPLEGESDIKTEYKGITYLFASTANLNKFKASPEKYEPAYGGWCAFAMGENGEKVKIDPETYKIMDG 116          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A3D5KNZ6_9BACT (YHS domain protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KNZ6_9BACT)

HSP 1 Score: 152 bits (384), Expect = 3.550e-45
Identity = 66/98 (67.35%), Postives = 80/98 (81.63%), Query Frame = 1
Query:   52 YSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            ++Q D VR K++N+K N+AIEGYDPVSYF+G PIEG+S I+   KGITY F S  N  KFKT+P+ YEPAYGGWCA+AMGE GE+VK+DPETY IVDG
Sbjct:   18 FAQADDVRKKNFNVKKNIAIEGYDPVSYFEGTPIEGESTISFTLKGITYLFHSANNLNKFKTSPEKYEPAYGGWCAFAMGETGERVKIDPETYKIVDG 115          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A355BVP5_9BACT (YHS domain protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A355BVP5_9BACT)

HSP 1 Score: 151 bits (382), Expect = 7.380e-45
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   16 ITICFFLC-FTVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            I IC +L   T  ++QTD VR K YN+K  +A+EGYDPVSYF+G+P+EG+S  +  Y G+TYRF++  N+ KF ++PD +EPAYGGWCAYAMGE GEKVK+DPET+ I+ G
Sbjct:    4 ILICLWLAGVTSSFAQTDLVRQKEYNLKKGIALEGYDPVSYFNGKPLEGESEFSTTYHGVTYRFATAENKKKFLSSPDQFEPAYGGWCAYAMGETGEKVKIDPETFKIIGG 114          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A136LNK3_9BACT (YHS domain-containing protein n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A136LNK3_9BACT)

HSP 1 Score: 150 bits (380), Expect = 1.310e-44
Identity = 65/108 (60.19%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   22 ICFFLCFTVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            I FFL  +V     D  RT H+N+K N+A+EGYDPVSYFDG+P+EGK +   V+KG+TY F+S  N AKFK  P+ YEPAYGGWCA+AMG +GEKVK+DPET+ I++G
Sbjct:    5 IWFFLLVSVAAVGQDEKRTAHFNLKKNIALEGYDPVSYFDGKPVEGKEDFKVVFKGVTYLFASALNAAKFKQAPENYEPAYGGWCAFAMGNSGEKVKIDPETFKILNG 112          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: UPI00191EEA22 (YHS domain-containing protein n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191EEA22)

HSP 1 Score: 150 bits (379), Expect = 2.040e-44
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 1
Query:   40 FTVGYSQ--TDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            F +G +Q  +D VR K +N+K NLA+EGYD VSYF G+P+EG+S    V+KG+TY F++QAN   F+ NPD YEPAYGGWCAYAMGE GEKVKVDPET+ I+DG
Sbjct:   12 FIIGQAQGQSDEVRKKQFNVKNNLALEGYDAVSYFSGKPLEGESRFKSVHKGLTYTFATQANLNTFEANPDKYEPAYGGWCAYAMGETGEKVKVDPETFTILDG 115          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A6N4EK97_9RHOO (YHS domain protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EK97_9RHOO)

HSP 1 Score: 150 bits (378), Expect = 2.900e-44
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   16 ITICFFLCFTV--GYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVD 342
            I + F L F     Y Q+D +R K++N+K NLA++GYDPVSYFD  P EGK  I  VYKGITY F S  N  KFK  P  YEPAYGGWCAYAMG++GEKVKVDPETY I+D
Sbjct:    4 ILLFFLLLFAAYPSYPQSDGIRQKNFNVKKNLALDGYDPVSYFDHRPEEGKEEIAFVYKGITYLFVSAGNLNKFKAMPSKYEPAYGGWCAYAMGDSGEKVKVDPETYKIID 114          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A7L9BGH9_9BACT (YHS domain protein n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BGH9_9BACT)

HSP 1 Score: 149 bits (376), Expect = 5.670e-44
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1
Query:   34 LCFTVGY--SQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            L F VG   SQ D  R K +N+K  LAI+GYDPV+YF G+P +GK +I + YKG+TYRF ++AN  KFK +P  YEPAYGGWCAYAMGE GEKVK+DPETY IVDG
Sbjct:    9 LLFAVGVVSSQNDEQRIKQFNLKNGLAIQGYDPVTYFTGKPQQGKEDIEYRYKGVTYRFLTRANLEKFKIDPVKYEPAYGGWCAYAMGETGEKVKIDPETYKIVDG 114          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A385SJ92_9BACT (YHS domain-containing protein n=2 Tax=Chryseolinea TaxID=1433993 RepID=A0A385SJ92_9BACT)

HSP 1 Score: 146 bits (368), Expect = 9.610e-43
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:   22 ICFFLCFTVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            + F L       Q+D VR K YN+K  +A++GYD VSYFDG+P+EG+     VYKG+ Y+F++Q+N  KF  NP  YEPAYGGWCA+AMGE+GEKVKVDPET+ I+DG
Sbjct:    8 VLFILIIGQAQGQSDDVRKKQYNVKNAVALQGYDAVSYFDGKPLEGEPEFKTVYKGLVYKFATQSNLTKFTANPSKYEPAYGGWCAFAMGESGEKVKVDPETFTILDG 115          
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Match: A0A5C7N1A3_9BACT (YHS domain-containing protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A5C7N1A3_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.770e-42
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   46 VGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEPIEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENGEKVKVDPETYNIVDG 345
            V Y Q+D VR   YN+K  +A+EGYDPVSYFDG+P EG   I   YKG+TY F++ AN AKFK  PD +EPAYGGWCAYAMG++GEKVKVDPET+ I++G
Sbjct:   14 VAYGQSD-VRVAQYNLKKGIALEGYDPVSYFDGKPQEGSEKIKVEYKGVTYLFATAANAAKFKQTPDKFEPAYGGWCAYAMGDSGEKVKVDPETFKILNG 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52759.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019EAE0165.150e-4758.77Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
A0A7Y4XQB4_9BACT4.480e-4665.35YHS domain-containing protein n=1 Tax=Cyclobacteri... [more]
A0A3D5KNZ6_9BACT3.550e-4567.35YHS domain protein n=1 Tax=Cytophagales bacterium ... [more]
A0A355BVP5_9BACT7.380e-4558.56YHS domain protein n=1 Tax=Cytophagales bacterium ... [more]
A0A136LNK3_9BACT1.310e-4460.19YHS domain-containing protein n=2 Tax=Bacteroidete... [more]
UPI00191EEA222.040e-4463.46YHS domain-containing protein n=1 Tax=Chryseolinea... [more]
A0A6N4EK97_9RHOO2.900e-4462.16YHS domain protein n=1 Tax=Azospira oryzae TaxID=1... [more]
A0A7L9BGH9_9BACT5.670e-4464.15YHS domain protein n=1 Tax=Flammeovirgaceae bacter... [more]
A0A385SJ92_9BACT9.610e-4357.41YHS domain-containing protein n=2 Tax=Chryseolinea... [more]
A0A5C7N1A3_9BACT1.770e-4264.00YHS domain-containing protein n=1 Tax=Cyclobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52759contigP-wetherbeei_contig52759:197..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121904.ARBP01000013_gene450
PFAMsYHS
Model size345
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.15e-39
EggNOG OGsCOG3350@1|root,COG3350@2|Bacteria,4NRFU@976|Bacteroidetes,47QIJ@768503|Cytophagia
Descriptionmonooxygenase activity
Cds size345
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.6313066-CDS-P-wetherbeei_contig52759:196..5411683186790.6313066-CDS-P-wetherbeei_contig52759:196..541Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52759 197..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52759.2.1prot_P-wetherbeei_contig52759.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52759 197..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52759.2.1

>prot_P-wetherbeei_contig52759.2.1 ID=prot_P-wetherbeei_contig52759.2.1|Name=mRNA_P-wetherbeei_contig52759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=115bp
MLKTFITICFFLCFTVGYSQTDAVRTKHYNIKTNLAIEGYDPVSYFDGEP
IEGKSNITHVYKGITYRFSSQANQAKFKTNPDTYEPAYGGWCAYAMGENG
EKVKVDPETYNIVDG
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mRNA from alignment at P-wetherbeei_contig52759:197..541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52759.2.1 ID=mRNA_P-wetherbeei_contig52759.2.1|Name=mRNA_P-wetherbeei_contig52759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig52759:197..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAGACATTTATAACCATTTGCTTCTTTTTATGTTTTACTGTCGG GTATAGCCAAACGGATGCGGTTCGAACGAAACACTATAATATAAAGACTA ATCTAGCAATAGAAGGTTATGATCCCGTAAGCTATTTTGACGGTGAGCCA ATTGAAGGTAAGAGCAACATTACTCACGTATATAAGGGGATAACGTATAG ATTCTCAAGTCAAGCGAATCAGGCAAAATTTAAAACTAACCCGGATACCT ACGAACCTGCTTACGGTGGCTGGTGTGCGTACGCGATGGGAGAAAATGGC GAAAAAGTTAAGGTTGACCCGGAAACATATAACATTGTGGATGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52759:197..541+

>mRNA_P-wetherbeei_contig52759.2.1 ID=mRNA_P-wetherbeei_contig52759.2.1|Name=mRNA_P-wetherbeei_contig52759.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig52759:197..541+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAGACATTTATAACCATTTGCTTCTTTTTATGTTTTACTGTCGG
GTATAGCCAAACGGATGCGGTTCGAACGAAACACTATAATATAAAGACTA
ATCTAGCAATAGAAGGTTATGATCCCGTAAGCTATTTTGACGGTGAGCCA
ATTGAAGGTAAGAGCAACATTACTCACGTATATAAGGGGATAACGTATAG
ATTCTCAAGTCAAGCGAATCAGGCAAAATTTAAAACTAACCCGGATACCT
ACGAACCTGCTTACGGTGGCTGGTGTGCGTACGCGATGGGAGAAAATGGC
GAAAAAGTTAAGGTTGACCCGGAAACATATAACATTGTGGATGGA
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