mRNA_P-wetherbeei_contig52752.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52752.1.1
Unique NamemRNA_P-wetherbeei_contig52752.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A6L8QAV8_9BACT (Chemotaxis protein (Fragment) n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A6L8QAV8_9BACT)

HSP 1 Score: 140 bits (352), Expect = 4.060e-38
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 1
Query:  109 SHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            S QM G +EE+S QA+  S A EQVN NIQ VAT     XXXXX            ++ AV +A+ TN+T++KLG+SS +IG+VIKVI+SIA+QTNLLALNATIEAARAGEAG+GFAVVANEVKELA +TAKATEDI+ KI+ I
Sbjct:    2 SQQMAGNAEETSAQANVVSAASEQVNQNIQTVATXXXXXXXXXXEIAHNATQATKVTSDAVQLADTTNKTVTKLGDSSAEIGQVIKVITSIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKELANQTAKATEDISNKIQAI 145          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A3D2VV51_9GAMM (Methyl-accepting transducer domain-containing protein n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A3D2VV51_9GAMM)

HSP 1 Score: 133 bits (334), Expect = 7.630e-35
Identity = 98/180 (54.44%), Postives = 118/180 (65.56%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            +A+GL  ++  LR S+A + +   TL+GAAEEL   S QM G +E +S +A                        XXXXXXXX          ASAV MA + N T+ KLGESS  IG +IKVI+SIA+QT+LLALNATIEAARAGEAG+GFAVVANEVKELAKETAKATE+I +KIE I
Sbjct:    1 MAQGLDQLLATLRDSMARIGQTAQTLAGAAEELTMVSQQMGGNAEAASHKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNAAEGAKVVASAVTMAQSANTTVRKLGESSAGIGNIIKVITSIAEQTHLLALNATIEAARAGEAGKGFAVVANEVKELAKETAKATEEIGRKIEAI 180          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: UPI00201C1197 (methyl-accepting chemotaxis protein n=1 Tax=Jatrophihabitans telluris TaxID=2038343 RepID=UPI00201C1197)

HSP 1 Score: 137 bits (345), Expect = 1.050e-34
Identity = 81/180 (45.00%), Postives = 125/180 (69.44%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            +A  L    G LR +L+ +  + V L+ +AE+L     Q+   ++E++R++ +A+   ++V+ ++Q VA AT++M                 +A+AV  A A  +T+++LGESS+QIG V++VI++IA+QTNLLALNATIEAARAG AG+GFAVVA+EVK+LA+ETAKATE+I+ ++E I
Sbjct:  275 MAGALDKAQGSLRHTLSSIGSSAVGLASSAEQLTVIGAQVSATADETARESANAAAVADEVSTHVQTVAAATEQMTASINEIEQSSANAVQVAATAVTEARAATETVTRLGESSSQIGSVVRVITAIAEQTNLLALNATIEAARAGAAGKGFAVVASEVKDLAQETAKATEEISSRVEKI 454          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: H6RUA2_BLASD (Methyl-accepting chemotaxis receptor/sensory transducer protein n=3 Tax=Geodermatophilaceae TaxID=85030 RepID=H6RUA2_BLASD)

HSP 1 Score: 129 bits (324), Expect = 4.100e-34
Identity = 73/124 (58.87%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  169 AGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            A E+V+ N+Q VA   +EM                 ++ AV  A AT  T++KLGESS +IG ++KVI+SIA+QTNLLALNATIEAARAGEAG+GFAVVANEVKELA+ETAKATEDI Q+++ I
Sbjct:    5 AAEEVSRNVQTVAAGAEEMGASIREIATNAAEASEVASRAVTAAQATTATVTKLGESSAEIGNIVKVITSIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKELAQETAKATEDIAQRVQAI 128          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A4Q6AUP4_9PROT (PAS domain S-box protein (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6AUP4_9PROT)

HSP 1 Score: 134 bits (338), Expect = 6.340e-34
Identity = 86/160 (53.75%), Postives = 111/160 (69.38%), Query Frame = 1
Query:   52 EVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKI 531
            E+ E    L+ A+EEL A+  QM   S +++ QA SA+ + + V+  + +V+T T+++                 ++     A+ATN TI KLGESS +IG VIKVISSIAQQTNLLALNATIEAARAG+AGRGFAVVANEVKELAK+TA+ATE+IT KI
Sbjct:  244 ELAEAATQLAAASEELNASXTQMVQNSAQTNAQATSAAKSADDVSKGVLLVSTNTEQLQVAIKEISKNASEASTMTSMTKQEAHATNLTIQKLGESSKEIGNVIKVISSIAQQTNLLALNATIEAARAGDAGRGFAVVANEVKELAKQTARATEEITSKI 403          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A8J3X018_9ACTN (Uncharacterized protein n=2 Tax=Planosporangium mesophilum TaxID=689768 RepID=A0A8J3X018_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 1.320e-33
Identity = 86/169 (50.89%), Postives = 115/169 (68.05%), Query Frame = 1
Query:   55 VQENVVTLSGAAEELAANSHQMQGYS-------EESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            ++  V TL+  A  L A S ++ G +       +E++ QAD  + A   V+ N+Q VA   +EM                 ++ AV +A +TNQT+SKLGESS +IG VIKVI+SIA+QTNLLALNATIEAARAGEAG+GFAVVA+EVK+LA+ETAKATEDI++++E I
Sbjct:  279 IRSIVETLTTGARTLGATSEKLAGVTARIGVSAKEAASQADVVAGAAGGVSSNVQTVAAGXEEMDASIREIAENAHSAARVASEAVGVAESTNQTVSKLGESSAEIGNVIKVITSIAEQTNLLALNATIEAARAGEAGKGFAVVASEVKDLAQETAKATEDISRRVEAI 447          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A8J7ACH2_9CYAN (Methyl-accepting chemotaxis protein n=2 Tax=aff. Roholtiella sp. LEGE 12411 TaxID=1828822 RepID=A0A8J7ACH2_9CYAN)

HSP 1 Score: 130 bits (328), Expect = 1.330e-33
Identity = 104/180 (57.78%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            VA     M+  +R S+ ++ E   T++ +AEEL A S +M G + +++ QA SAS +   V+ N           XXXXXXXXXXXXXXXXX    V  A  TN TI+KLG+SS  IGKV+KVI+SIAQQTNLLALNATIEAARAG+AG+GFAVVA+EVKELAK+TA ATEDI+Q+IE I
Sbjct:   59 VAIAFNEMIASVRDSIRQMAEVAATVASSAEELTAVSSEMSGNASQTAEQATSASASAXXVSQNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGTAVKTNATINKLGQSSIDIGKVVKVITSIAQQTNLLALNATIEAARAGDAGKGFAVVASEVKELAKQTANATEDISQRIEAI 238          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: A0A5B1LBB5_9ACTN (GAF domain-containing protein n=1 Tax=Nocardioides humilatus TaxID=2607660 RepID=A0A5B1LBB5_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 1.480e-33
Identity = 104/180 (57.78%), Postives = 128/180 (71.11%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            VA GL S++  +R S+ ++      L+ +A +L + S  M   +  +S +A SAS A  QV+ +IQ VA      XXXXXXXXXXXXX    +  AV +A     T++ LGESS +IG+VIKVI+SIAQQTNLLALNATIEAARAG+AG+GFAVVANEVKELAKETAKATEDI QKIE I
Sbjct:  534 VATGLRSLLNTMRSSMGDISRTAEALATSAGQLTSLSQGMGEGATLTSDRAGSASTASVQVSASIQTVAXXXXXXXXXXXXXXXXXXXAAAVATDAVNVAGGAEATVASLGESSAEIGQVIKVITSIAQQTNLLALNATIEAARAGDAGKGFAVVANEVKELAKETAKATEDIGQKIEAI 713          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: UPI000E21EC42 (methyl-accepting chemotaxis protein n=1 Tax=Austwickia chelonae TaxID=100225 RepID=UPI000E21EC42)

HSP 1 Score: 134 bits (336), Expect = 1.930e-33
Identity = 98/180 (54.44%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            +AR L      +R  L  V E   T++ A+EEL A + QM+  +  SS +A +A+ +   V+ N+Q         XXXXXXXXXXXX     +ASAV +A+ TN T++KLG+SS +IG V+KVI++IA+QTNLLALNATIEAARAGEAG+GFAVVANEVK+LA+ETAKATEDI+ ++E I
Sbjct:  274 MARALDQSRESMRNVLRRVGEASSTVAAASEELTATAGQMRASATLSSERAGAAAGSAADVSNNVQXXXXXXXXXXXXXXXXXXXXXDAAGVAASAVQVADRTNSTVAKLGDSSVEIGNVVKVITTIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKDLAQETAKATEDISHRVEQI 453          
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Match: UPI001944F605 (methyl-accepting chemotaxis protein n=1 Tax=Dactylosporangium siamense TaxID=685454 RepID=UPI001944F605)

HSP 1 Score: 133 bits (335), Expect = 2.010e-33
Identity = 84/180 (46.67%), Postives = 117/180 (65.00%), Query Frame = 1
Query:    1 VARGLTSMVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHAGEQVNGNIQMVATATQEMXXXXXXXXXXXXXXXXXSASAVIMANATNQTISKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVANEVKELAKETAKATEDITQKIETI 540
            +A  L + +  +  S+AEV  +   L+GA+  LA  +  +   +  SS Q   AS+A E V+ ++ ++A   +EM                 ++ AV  A A N T+ +L ESST+IG V+K+I++IA+QTNLLALNATIEAARAGEAG+GFAVVANEVK+LA+ETAKATEDI Q++ TI
Sbjct:  243 MAIALDNAIDSIHGSIAEVNNSSDALAGASRNLAQVNEGISNAAVTSSAQMTEASNASEAVSRHVNVIAAGAEEMGVSIQEIARNAADAAGVASGAVREAAAANSTVDRLAESSTEIGSVLKLITAIAEQTNLLALNATIEAARAGEAGKGFAVVANEVKDLAQETAKATEDIRQRVTTI 422          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52752.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8QAV8_9BACT4.060e-3863.19Chemotaxis protein (Fragment) n=1 Tax=Nitrospinae ... [more]
A0A3D2VV51_9GAMM7.630e-3554.44Methyl-accepting transducer domain-containing prot... [more]
UPI00201C11971.050e-3445.00methyl-accepting chemotaxis protein n=1 Tax=Jatrop... [more]
H6RUA2_BLASD4.100e-3458.87Methyl-accepting chemotaxis receptor/sensory trans... [more]
A0A4Q6AUP4_9PROT6.340e-3453.75PAS domain S-box protein (Fragment) n=1 Tax=Proteo... [more]
A0A8J3X018_9ACTN1.320e-3350.89Uncharacterized protein n=2 Tax=Planosporangium me... [more]
A0A8J7ACH2_9CYAN1.330e-3357.78Methyl-accepting chemotaxis protein n=2 Tax=aff. R... [more]
A0A5B1LBB5_9ACTN1.480e-3357.78GAF domain-containing protein n=1 Tax=Nocardioides... [more]
UPI000E21EC421.930e-3354.44methyl-accepting chemotaxis protein n=1 Tax=Austwi... [more]
UPI001944F6052.010e-3346.67methyl-accepting chemotaxis protein n=1 Tax=Dactyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52752contigP-wetherbeei_contig52752:3..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog446469.Sked_27420
PFAMsHAMP,MCPsignal
Model size540
Max annot lvl201174|Actinobacteria
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.13e-33
EggNOG OGsCOG0840@1|root,COG0840@2|Bacteria,2GP45@201174|Actinobacteria
Descriptionmethyl-accepting chemotaxis protein
Cds size519
COG categoryNT
BRITEko00000,ko00001,ko02035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.5920727-UTR-P-wetherbeei_contig52752:2..231683186790.5920727-UTR-P-wetherbeei_contig52752:2..23Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52752 3..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.6060336-CDS-P-wetherbeei_contig52752:23..5421683186790.6060336-CDS-P-wetherbeei_contig52752:23..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52752 24..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52752.1.1prot_P-wetherbeei_contig52752.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52752 24..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52752.1.1

>prot_P-wetherbeei_contig52752.1.1 ID=prot_P-wetherbeei_contig52752.1.1|Name=mRNA_P-wetherbeei_contig52752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MVGDLRRSLAEVQENVVTLSGAAEELAANSHQMQGYSEESSRQADSASHA
GEQVNGNIQMVATATQEMASSIREIAKSANQAAQVSASAVIMANATNQTI
SKLGESSTQIGKVIKVISSIAQQTNLLALNATIEAARAGEAGRGFAVVAN
EVKELAKETAKATEDITQKIETI
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mRNA from alignment at P-wetherbeei_contig52752:3..542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52752.1.1 ID=mRNA_P-wetherbeei_contig52752.1.1|Name=mRNA_P-wetherbeei_contig52752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52752:3..542+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGCTCGGGGTTTAACCTCCATGGTTGGAGATCTGCGCCGAAGTCTGGC CGAAGTCCAGGAGAATGTGGTCACGCTCAGCGGCGCCGCAGAGGAGCTGG CCGCCAACAGCCATCAGATGCAGGGCTACTCAGAAGAGTCGTCTCGTCAG GCGGATTCGGCTTCCCACGCTGGCGAGCAAGTGAATGGCAATATTCAGAT GGTGGCAACGGCTACCCAAGAAATGGCCTCCAGCATCCGTGAAATCGCGA AAAGCGCCAATCAAGCCGCCCAGGTTTCAGCCTCGGCCGTGATAATGGCC AACGCCACCAATCAGACGATCTCCAAACTTGGAGAAAGCTCAACGCAAAT CGGTAAGGTTATCAAGGTTATTAGCTCGATCGCACAGCAGACCAACTTGC TCGCCTTAAACGCGACGATCGAGGCTGCCCGGGCAGGCGAGGCGGGGCGC GGTTTTGCAGTGGTTGCCAACGAGGTTAAAGAGCTAGCTAAAGAGACAGC CAAAGCAACTGAAGATATTACCCAGAAAATTGAAACGATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52752:3..542+

>mRNA_P-wetherbeei_contig52752.1.1 ID=mRNA_P-wetherbeei_contig52752.1.1|Name=mRNA_P-wetherbeei_contig52752.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig52752:3..542+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTGGAGATCTGCGCCGAAGTCTGGCCGAAGTCCAGGAGAATGTGGT
CACGCTCAGCGGCGCCGCAGAGGAGCTGGCCGCCAACAGCCATCAGATGC
AGGGCTACTCAGAAGAGTCGTCTCGTCAGGCGGATTCGGCTTCCCACGCT
GGCGAGCAAGTGAATGGCAATATTCAGATGGTGGCAACGGCTACCCAAGA
AATGGCCTCCAGCATCCGTGAAATCGCGAAAAGCGCCAATCAAGCCGCCC
AGGTTTCAGCCTCGGCCGTGATAATGGCCAACGCCACCAATCAGACGATC
TCCAAACTTGGAGAAAGCTCAACGCAAATCGGTAAGGTTATCAAGGTTAT
TAGCTCGATCGCACAGCAGACCAACTTGCTCGCCTTAAACGCGACGATCG
AGGCTGCCCGGGCAGGCGAGGCGGGGCGCGGTTTTGCAGTGGTTGCCAAC
GAGGTTAAAGAGCTAGCTAAAGAGACAGCCAAAGCAACTGAAGATATTAC
CCAGAAAATTGAAACGATT
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