mRNA_P-wetherbeei_contig52750.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52750.1.1
Unique NamemRNA_P-wetherbeei_contig52750.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A7X9KKJ1_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KKJ1_9ACTN)

HSP 1 Score: 196 bits (497), Expect = 2.470e-57
Identity = 105/177 (59.32%), Postives = 121/177 (68.36%), Query Frame = 1
Query:    1 LWAAVFITAAMVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLVGLLFWRRDRHRSITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            LWA           L +W AP R   ++AV  V A VLTR++VGIGA   +G  G L WRR R  ++     A   L  ++ +NLAKFGTLLDLPADRQ+L+LQ+P+RAAWFAGNDGSFF  RFL TTV+ YLRPD VR ERLLP VRFGP A E GSY LE NTPASSL  SATLL
Sbjct:  173 LWAFALFLLTATAALRMWAAPGRHTFLVAVALVTATVLTRSSVGIGALAAVGFTGALLWRRHRRVAVAAGAGAVGGLLLNVAVNLAKFGTLLDLPADRQLLSLQNPARAAWFAGNDGSFFSLRFLPTTVVHYLRPDTVRFERLLPFVRFGPLATEHGSYPLEGNTPASSLPTSATLL 349          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A539DZD1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DZD1_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 1.210e-49
Identity = 93/172 (54.07%), Postives = 119/172 (69.19%), Query Frame = 1
Query:    1 LWAAVFITAAMVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLVGLLFWRRDRHRSITLSV---AAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASS 507
            LWAA F T A+V  + +   P+RR AVLA   + AA+LTRA VGIG A G G+V L  WRR+R  +   ++   A  A   TH+ +N AKFG+ LDLPA+RQ+L++  P RAAWFAGN GSFF  RFL TTV+ YLRPD VR ERL+P +R+GP A + GSY +E+ TPA+S
Sbjct:  188 LWAAAFATWALVGIIGMHADPSRRSAVLAAACIAAAILTRAPVGIGIATGAGIVALTMWRRERTNATNATIVIGACIAGFATHVAVNFAKFGSALDLPAERQLLSINVPERAAWFAGNHGSFFSLRFLPTTVVHYLRPDTVRFERLVPFIRYGPLATDRGSYPMEAITPAAS 359          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A6N2DLR5_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DLR5_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 6.290e-44
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  103 AAVLTRATVGIGAAVGLGLVGLLFWRRDRHRSITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            A VLTRA+VGIG ++ L  V    WRRDR  +   + AA   +  HM +NLAKFG+LL LPA+RQVL+L  P RA WFAGN GSFF  RFL TT+ QYLRPD +R ERL+P +RFGP A +LGSY +ES TPASS+TA+A +L
Sbjct:  208 ATVLTRASVGIGVSLALMAVAAFVWRRDRRVAGWAAGAATGGVALHMALNLAKFGSLLGLPAERQVLSLIDPERAEWFAGNSGSFFSARFLPTTLAQYLRPDTLRFERLVPGIRFGPLAPDLGSYPVESTTPASSITATAPVL 350          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A524NC77_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524NC77_9ACTN)

HSP 1 Score: 143 bits (361), Expect = 1.020e-36
Identity = 82/149 (55.03%), Postives = 99/149 (66.44%), Query Frame = 1
Query:  103 AAVLTRATVGIGAAVGLGLV---GLLFWRRDR---HRSITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            AA LTRA +G+G  V L LV   G+L WR  R    R     +     +  H+ +N AKFGTL  +P DRQ+L+L  P RAAWFAGN+GSFF  RFL TT++QYLRPD +R ERL+P +RFGP A + GSY  ES TPASSL  SATLL
Sbjct:  223 AATLTRAPIGLG--VSLALVASGGVLLWRSRRTGFDRGRWALLGGVLPIVAHVAVNFAKFGTLFSVPGDRQLLSLTDPVRAAWFAGNNGSFFSYRFLPTTLVQYLRPDGIRFERLVPGIRFGPLAVDRGSYPAESITPASSLPTSATLL 369          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A6C7E9Z3_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E9Z3_ILUCY)

HSP 1 Score: 137 bits (346), Expect = 1.380e-34
Identity = 78/154 (50.65%), Postives = 100/154 (64.94%), Query Frame = 1
Query:   97 VFAAVLTRATVGIGAAVGLGLVGLLFWRRDRHRSIT--------LSVAA-FAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            V A  +TRA +G+G A+ LGL+GL+   R R R+          L +A   A L  + V+N+AKFGTLL +P DRQ+L+L  P+RAA+F    GSFF   FL TT+ QYLRPD +R ERL+P +RFGP A   GS  +E+ TPASSL  SATLL
Sbjct:  218 VLATTMTRAPIGLGLAMSLGLIGLILAWRSRSRASDSARRHDTWLPIAGGIAPLAAYAVVNVAKFGTLLSVPGDRQLLSLTDPTRAAFFETTGGSFFSPHFLPTTLAQYLRPDTIRFERLVPGIRFGPLAENYGSIDVETVTPASSLIVSATLL 371          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A7K1B7V5_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B7V5_9ACTN)

HSP 1 Score: 133 bits (335), Expect = 4.280e-33
Identity = 97/206 (47.09%), Postives = 123/206 (59.71%), Query Frame = 1
Query:    1 LWAAVFIT---AAMVHTLALWRA---PARRHAVLAVVFVFAA-VLTRATVGIGAAVGLGLVGLL--FWRR------------DRHRS------ITLSVAAFAALG--THMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            LWAA F     A +V  L +  A   P RR  +LAV F  AA + TRA+VG+G AVG  LV  +  FW R            DR R+        ++  A +A+G   H  IN AKFG+   LP   Q+L++  P+RAAWFAGN  SFF  RFL TT++QY+RPD VR+ERL P VR+GP A + GSY LE+ TP++SLT SATLL
Sbjct:  144 LWAAAFAVWTLAGVVRLLDVLDAGDSPTRRQ-LLAVGFPIAAGITTRASVGLGVAVGACLVLAVPVFWSRIVARSGKMRDQNDRGRTGAPAMITAVATVAASAVGFVVHTGINWAKFGSPTALPGQLQLLSINDPTRAAWFAGNGDSFFSPRFLETTLVQYVRPDTVRLERLFPFVRYGPLATDRGSYPLETITPSASLTTSATLL 348          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A0G3V4V5_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium IMCC26256 TaxID=1650658 RepID=A0A0G3V4V5_9ACTN)

HSP 1 Score: 97.8 bits (242), Expect = 1.900e-20
Identity = 66/187 (35.29%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 LWAAVFITAAMVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLV--GLLFWRRDR------------HRSITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTAS 519
            +W   F  AA    LA       +  +LA +F  AA+L+R  V +G    LGL+  G LF R+ R                +L +AA+  +     IN  KFG+  DLP  RQ ++L +P+R A  A N GS F   +L T V QY+RPDA+R+ RL P + F P A   G +  ++  P SS+ +S
Sbjct:  164 MWGVAFTMAAFASILAFIIDRRTKSLLLASLFATAAILSRGPVALGVVAALGLLAAGALF-RKSRVWFGLDADASPLRLVASLGLAAWVPIAAFATINYIKFGSFFDLPNSRQSISLVNPNRKAVLASNHGSLFSPGYLITNVAQYVRPDALRLNRLFPFITFPPLANNFGGHLYDTIEPTSSIPSS 349          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A538JIG5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JIG5_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 1.050e-18
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 LWAAVFITAAMVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLVGLL-----FWRRDRHRS---ITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRF-GPAARELGSYRLESNTPASSLTAS 519
            +W      AA    +A   AP RR  VL  + V  A LTR ++G+G  V L LV ++        RDR        L  AA   +  +  +N AKFGTLL +P D+Q      P R      N G  F   F+ TT+LQY RPDA+ V RLLP + F    AR +G  R ++   ASS+ AS
Sbjct:  174 MWGIALALAAYDQLIAYVLAPTRRRLVLVTLLVAGAFLTRGSIGLGPVVALMLVAVMSAGGALRARDRAGLPGVAALGAAALVPIILYSYVNYAKFGTLLSIPTDKQFQVTVDPHRREVLRANGGKLFRLAFVPTTLLQYARPDALDVHRLLPWISFPSHRARVIGDARFDTLDRASSVPAS 355          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A538HEV9_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HEV9_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 3.010e-15
Identity = 55/171 (32.16%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  106 AVLTRATVGIGAAVGLGLV--------GLLFWRRDR--------------------HRSITLSVAAFAA-LGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYRLESNTPASSLTASATLL 531
            A+++RA+VG+G  + LGL+        G  +W   R                    H SI   V A A  L ++M +N AKFGTL+ +P ++Q + L  P R A  A    S FG R++ T+++QYLRPD +   R  P V F       G  + ++  P +S+T ++ LL
Sbjct:  183 AMMSRASVGLGPVIALGLLVAVRVIQRGADWWTAHRGQTSRRTTLARWCGLDADTAHGSIWQVVLATAIPLASYMYVNYAKFGTLVSVPIEKQDVLLARPERRAVLAATGNSLFGLRYVATSLVQYLRPDGIGFRRTFPWVTFAHFPHVFGGVQFDNIEPTASMTVTSVLL 353          
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Match: A0A838PIK5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A838PIK5_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.870e-12
Identity = 55/152 (36.18%), Postives = 77/152 (50.66%), Query Frame = 1
Query:    1 LWAAVFITAAMVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLVGLLFW-----RRD-RHRSITLSVAA-FAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAAWFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLP 435
            LW A F  A++   + + R  +     LA + V  A+ TR   G+G  + L  +          RRD R R+    VA    ALG+  V+N+AKFG    +P D+QV +    +R A    NDGS FG R++ TT+LQ +RPDAV   R  P
Sbjct:  169 LWGAAFAVASLAAIVMVLRRASIGRIALAGLLVTLAINTRVPAGLGGVLALLALXXXXXXXXAARRDGRLRTAAALVAXXLVALGSSAVVNVAKFGEPYGIPLDKQVFSGIDANRKAALEDNDGSLFGARYVPTTILQVVRPDAVGTTRSFP 320          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52750.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7X9KKJ1_9ACTN2.470e-5759.32Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A539DZD1_9ACTN1.210e-4954.07Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6N2DLR5_9ACTN6.290e-4459.44Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A524NC77_9ACTN1.020e-3655.03Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A6C7E9Z3_ILUCY1.380e-3450.65Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A7K1B7V5_9ACTN4.280e-3347.09Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A0G3V4V5_9ACTN1.900e-2035.29Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A538JIG5_9ACTN1.050e-1837.36Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A538HEV9_9ACTN3.010e-1532.16Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A838PIK5_9ACTN1.870e-1236.18Uncharacterized protein (Fragment) n=1 Tax=Thermol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52750contigP-wetherbeei_contig52750:12..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1313172.YM304_25180
Model size531
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.59e-35
EggNOG OGs2EJZM@1|root,33DQ6@2|Bacteria,2IBYK@201174|Actinobacteria
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.5389276-CDS-P-wetherbeei_contig52750:11..5121683186790.5389276-CDS-P-wetherbeei_contig52750:11..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52750 12..512 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.5523615-UTR-P-wetherbeei_contig52750:512..5421683186790.5523615-UTR-P-wetherbeei_contig52750:512..542Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52750 513..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52750.1.1prot_P-wetherbeei_contig52750.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52750 12..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52750.1.1

>prot_P-wetherbeei_contig52750.1.1 ID=prot_P-wetherbeei_contig52750.1.1|Name=mRNA_P-wetherbeei_contig52750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
MVHTLALWRAPARRHAVLAVVFVFAAVLTRATVGIGAAVGLGLVGLLFWR
RDRHRSITLSVAAFAALGTHMVINLAKFGTLLDLPADRQVLTLQSPSRAA
WFAGNDGSFFGTRFLTTTVLQYLRPDAVRVERLLPVVRFGPAARELGSYR
LESNTPASSLTASATLL
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mRNA from alignment at P-wetherbeei_contig52750:12..542-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52750.1.1 ID=mRNA_P-wetherbeei_contig52750.1.1|Name=mRNA_P-wetherbeei_contig52750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig52750:12..542- (Phaeothamnion wetherbeei SAG_119_79)
CTGTGGGCCGCCGTGTTCATCACCGCGGCGATGGTGCACACGTTGGCGCT GTGGCGGGCGCCGGCGCGCCGGCACGCGGTGCTGGCGGTCGTGTTCGTGT TCGCCGCCGTGCTCACGCGGGCCACCGTCGGCATCGGTGCCGCCGTCGGG CTCGGGCTGGTCGGTCTGCTCTTCTGGCGACGCGACCGCCACCGATCGAT CACGCTGTCGGTCGCCGCGTTCGCCGCGCTCGGCACGCACATGGTGATCA ACCTCGCCAAGTTCGGCACGCTGCTCGACCTGCCCGCCGACCGTCAAGTG CTGACGTTGCAGTCGCCGTCACGCGCGGCCTGGTTCGCCGGCAACGACGG GAGCTTCTTCGGGACGCGCTTCCTCACCACCACGGTCCTGCAGTACCTGC GGCCGGATGCCGTGCGAGTGGAGCGCTTGCTGCCGGTCGTGCGCTTCGGC CCGGCGGCGCGAGAGCTCGGCAGCTACCGGTTGGAGAGCAACACGCCGGC CTCGTCGCTGACCGCCTCGGCGACGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52750:12..542-

>mRNA_P-wetherbeei_contig52750.1.1 ID=mRNA_P-wetherbeei_contig52750.1.1|Name=mRNA_P-wetherbeei_contig52750.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig52750:12..542- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCACACGTTGGCGCTGTGGCGGGCGCCGGCGCGCCGGCACGCGGT
GCTGGCGGTCGTGTTCGTGTTCGCCGCCGTGCTCACGCGGGCCACCGTCG
GCATCGGTGCCGCCGTCGGGCTCGGGCTGGTCGGTCTGCTCTTCTGGCGA
CGCGACCGCCACCGATCGATCACGCTGTCGGTCGCCGCGTTCGCCGCGCT
CGGCACGCACATGGTGATCAACCTCGCCAAGTTCGGCACGCTGCTCGACC
TGCCCGCCGACCGTCAAGTGCTGACGTTGCAGTCGCCGTCACGCGCGGCC
TGGTTCGCCGGCAACGACGGGAGCTTCTTCGGGACGCGCTTCCTCACCAC
CACGGTCCTGCAGTACCTGCGGCCGGATGCCGTGCGAGTGGAGCGCTTGC
TGCCGGTCGTGCGCTTCGGCCCGGCGGCGCGAGAGCTCGGCAGCTACCGG
TTGGAGAGCAACACGCCGGCCTCGTCGCTGACCGCCTCGGCGACGCTGCT
G
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