mRNA_P-wetherbeei_contig5275.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5275.2.1
Unique NamemRNA_P-wetherbeei_contig5275.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: D8LFZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ4_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.750e-51
Identity = 118/318 (37.11%), Postives = 165/318 (51.89%), Query Frame = 1
Query:    4 ATLVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEV--EAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTIAVANE 951
            A L+ E LFLA+LQ     H+    HRT++ELCR  PK  P AV+   G +F +L  LD   A +F +WFA HL N+EYKWPFW+H+   VEL  D+  RVFV+ V  ALV+LSY DRIK+TLP++L  LLP  P  V  ++  A               A +    V S+E+ + ++                              +LR G  +PTHT   LDRY + L    R     DE   EA Q A++  V ++W+ +PQWF L    LL  GV+SPT    YV  ++N+N +A +P LW+ +   I++  +
Sbjct:  467 AYLITEVLFLAMLQLPAAEHLAISCHRTILELCRIVPKEAPAAVSYCTGRLFDELERLDSTVASRFGTWFADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDRIKKTLPEALWPLLPLDPTPVCPYLDGATGIPASLQRI-----AADLSSRVSSREDVEDLQV-----------------------------LLRGGQASPTHTFVYLDRYRSYLRTLRR-----DEALGEANQVAMLDGVAQLWEHSPQWFCLVCKYLLDIGVLSPTTVVYYVFREDNNNAIALSPFLWEVMSKAISLYTD 745          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A836C9J1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.230e-38
Identity = 109/317 (34.38%), Postives = 156/317 (49.21%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETER----LVRSKEEADAVRTWLD-SVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTIAVA 945
            +VVETL   ++   QP HM   LHRTL+ELCR AP  V PA++   G ++ +LP +D  + +Q A WFA+HL ++E+KWPFWQH+A  ++  +DHP R+FV    D LVRLSY DRIK  LP+++  LLPP P  +  + +P+XXXXXX           E  +    +V +KE  D +  W +  +   D + AE    +   A  LT+AIL AG  +                                               Q  V AT +LLRRG VSP     +  +  N + L +   LW+ L+  + +A
Sbjct:  434 IVVETLLQMVISLPQPPHMTAMLHRTLLELCRLAPNEVAPAISSATGALYHELPRMDFHSRRQLALWFANHLKDTEFKWPFWQHWAGVLQEQRDHPQRMFVEMALDMLVRLSYRDRIKNELPEAMWALLPPQPSIINPYDTPSXXXXXXTAAGELPASVLEVIQALVPMVAAKEHPDNLSQWFELQLSTIDAADAEAAGGAAWSAAALTYAILAAGAPSXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXQTMVAATRLLLRRGAVSPEAVVTHFFAPANVDKLGWYAPLWELLEAALQLA 746          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A7S3YHQ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHQ8_HETAK)

HSP 1 Score: 143 bits (361), Expect = 6.620e-37
Identity = 103/293 (35.15%), Postives = 138/293 (47.10%), Query Frame = 1
Query:   70 PYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXA-EETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTIAVA 945
            PYLHR L+EL   AP  VPPA+A G  LVFR+LP  D LAA+ FA+WFAH+LAN+ + WPFW H     + P+D   RV+VA V +  V+L+Y +RI E +P+ +H LLPP P + A ++           XXXX   A      ++R++EE  AVR +L                                                L A   R           Q A+V    E WQ + Q F+     L+ R +VSP +  A+V SDE   G+A  P LWD L    AV+
Sbjct:    9 PYLHRVLLELLGAAPTIVPPAMAAGTELVFRRLPRCDFLAAKAFATWFAHNLANTGFAWPFWAHXXXVAQAPEDDAQRVWVAAVLETCVKLTYRERIAEAVPEEVHALLPPVPATYARYLDGTDEEAAAAGXXXXARAAARRCLEMLRAREEDAAVRAFL-MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLEALAAR--------PEHQVALVEATAEFWQASNQMFLFLMEELMLRDLVSPLIVVAWVFSDECLVGVAAAPFLWDVLSRAAAVS 292          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A7S2V2Z0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Z0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.550e-33
Identity = 67/140 (47.86%), Postives = 95/140 (67.86%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFV 429
            LVVE +  ALL  S P  + PYLHR ++EL R  P  +PPAVA    L+FR++P +DP A++  A WF H+L+N+ + WP+W H+AF  + P+D P RVFVA VF+  VRL+Y+DRI++ +P  L  LLPP P + + F+
Sbjct:  412 LVVEVVMAALL--SLPSELGPYLHRLILELLRTEPTKLPPAVACATELLFRRVPDMDPCASRALALWFGHNLSNTGFAWPYWAHWAFVADRPEDDPQRVFVAAVFECCVRLTYLDRIRQVVPPQLQALLPPEPAAYSRFL 549          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A835V8X8_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835V8X8_VANPL)

HSP 1 Score: 117 bits (294), Expect = 6.650e-26
Identity = 88/311 (28.30%), Postives = 139/311 (44.69%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKS--LHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTI 936
            L+ ET+F  LL   Q      Y    +++LC+  P   P  VA  V  +F K+  LD     +   WF+HHLAN ++ WP W+ +A+  ELP+  P RVFV  V +  VRLSY D+IK+++  +  L  LLPP   S   +                   + E   ++R K     +  W+D   V    G++F  + V +       +L  G K+ TH    L+RYG++++  C         E  Q  V+S V   W+ + Q   +    ++   ++S      +V S+ N N    T   W+ L+  I
Sbjct:   43 LMAETIFSQLLLLPQAPFKSMYYTLVIIDLCKALPGAFPAVVAGAVRALFEKISDLDMECRIRLILWFSHHLANFQFIWP-WEEWAYVKELPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENAPILEELLPPKGGSCFKYT------VEGDQGEDGFKLSSELNNMIRGKRTTREIILWVDE-NVIPAHGSKFATEIVMQ------TLLDIGSKSFTHLITVLERYGSVISRLCSS-------EDMQVLVISEVSSYWKNSTQMTAITIDRMMGYRLISNLAIVKWVFSEVNINQFHLTDRPWEILRNAI 332          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A097PNN0_CINCA (ABH1 (Fragment) n=1 Tax=Cinnamomum camphora TaxID=13429 RepID=A0A097PNN0_CINCA)

HSP 1 Score: 115 bits (287), Expect = 8.080e-25
Identity = 88/308 (28.57%), Postives = 142/308 (46.10%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPK--SLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALK 927
            L+ ET+F  LL   QP     Y    +++LC+  P   P  VA  V  +F K+  LD     +   WF+HHLAN ++ WP W+ +A+ +ELP+  P RVFV  V +  VRLSY D+IK+++    SL  LLPP        V P+                 E   +V+ K+ A  + +W++   +        P     + ++ T  +L  G K+ TH    L+RYG ++A  C       +++  Q A++  V   W+ + Q   +A   ++   ++S      +V S  N      T  LW+ L+
Sbjct:  214 LMAETIFSQLLLLPQPPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRSLFEKIADLDMECRTRLILWFSHHLANFQFIWP-WEEWAYVLELPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENAPSLEELLPPK-------VGPSFKYEEGRELFT------ELNGMVKGKKTAREIISWIEESVI--------PLHGALEVIIQT--LLHIGSKSFTHLMTVLERYGQVIARLC------PDLDK-QVALIDEVSSFWKNSAQMTAVAIDRMMGYRLISNLAIVNWVFSPANIEQFHTTDRLWEILQ 490          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A7C8ZCF6_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZCF6_OPUST)

HSP 1 Score: 114 bits (286), Expect = 8.940e-25
Identity = 83/313 (26.52%), Postives = 146/313 (46.65%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKS--LHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAM-LLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTIA 939
            L+ ET+F  LL   QPR    Y    +M+LC+  P   P  VA  V  +F K+  LD     +   WF+HHL+N ++ WP W+ +A+ ++LP   P R+FV  V +  VRLSY D++K+++  +  L  LLPP       + S                 AEE   +VR ++ A  +  W++   +        P   +   + ++   +L  G K+ TH    L+RYG ++A+ C       ++E  Q  ++S +   W+ + Q   +A   ++   ++S     ++V S  N +    +   W+ L+  ++
Sbjct:   73 LMAETIFSQLLLLPQPRFKPIYYTLVIMDLCKALPGAFPQVVATAVRALFEKIVELDMECRTRLILWFSHHLSNFQFIWP-WEEWAYVLDLPMWAPQRIFVQEVLEREVRLSYWDKVKQSVENAPGLEELLPPKGSPSFKYNS-----DDGRERTDQLALAEELTSMVRGRQTAREIILWVEENLI--------PVHGLNLTLEVVVQTLLNIGSKSFTHLITVLERYGQVIAKIC------PDLEM-QVMLISEISAFWKNSTQMTAIAIDRMMGYRLISNLAIVSWVFSSANVDQFHTSDRPWEILRNAVS 364          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A443NDD5_9MAGN (Nuclear cap-binding protein subunit 1 n=2 Tax=Magnoliopsida TaxID=3398 RepID=A0A443NDD5_9MAGN)

HSP 1 Score: 114 bits (285), Expect = 2.060e-24
Identity = 88/309 (28.48%), Postives = 143/309 (46.28%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPK--SLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXA-EETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALK 927
            L+ ET+F  LL   QP     Y    +++LC+  P   P  VA  V  +F K+  LD     +   WF+HHLAN ++ WP W+ +A+ +ELP+  P RVFV  V +  VRLSY D+IK+++    SL  LLPP        V P+                  E   +V+ K+ A  + +W++   V    G++   +      ++   +L  G K+ TH    L+RYG ++A  C       +++  Q A++  V   W+ + Q   +A   ++   ++S      +V S  N      T  LW+ L+
Sbjct: 1096 LMAETIFSQLLLLPQPPFKPIYYTLVIIDLCKALPGAFPAVVAGAVRSLFEKIADLDMECRTRLILWFSHHLANFQFIWP-WEEWAYVLELPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENAPSLEELLPPK-------VGPSFKYSAEEGRETIEHTLFTELNGMVKGKKTAREIISWIEE-SVIPLHGSKIALE------VIIQTLLHIGSKSFTHLMTVLERYGQVIARLC------PDLDK-QVALIDEVSSFWKNSAQMTAVAIDRMMGYRLISNLAIVNWVFSPANIEQFHTTDRLWEILQ 1382          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A6J1DLR3_MOMCH (nuclear cap-binding protein subunit 1 n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1DLR3_MOMCH)

HSP 1 Score: 113 bits (283), Expect = 3.210e-24
Identity = 88/309 (28.48%), Postives = 141/309 (45.63%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKS--LHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAMLLT-HAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALK 927
            L+ ET+F  LL   QP     Y    +M+LC+  P   P  VA  V  +F K+  LD     +   WF+HHL+N ++ WP W  +A+ +ELP+  P RVFV  V +  VRLSY D+IK+++  +  L  LLPP       F +                 + E   LV+ +  A  V +WLD   +        P  S+  ++++    +L  G K+ TH    L+RYG ++   C      D+ +  Q  ++S VG  W+   Q   +A   ++   ++S      ++ S EN      +   W+ L+
Sbjct:  348 LMAETIFSQLLMLPQPPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFEKIADLDMECRIRLILWFSHHLSNFQFIWP-WDEWAYVLELPKWAPQRVFVQEVLNREVRLSYWDKIKQSIENAPGLEELLPPKGGPNFKFST-----DDDGEKSEQHVVSAELSNLVKGRAXAREVISWLDESVI--------PKHSLDVSLVVVVQTLLDIGSKSFTHLITVLERYGQVILRMCN-----DQDK--QVLLISEVGSYWKNNTQMTAIAIDRMMGYRLISNLAIVRWIFSPENIQQFHTSDRPWEILR 635          
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Match: A0A0P1AD86_PLAHL (Nuclear cap-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AD86_PLAHL)

HSP 1 Score: 113 bits (283), Expect = 3.250e-24
Identity = 88/317 (27.76%), Postives = 148/317 (46.69%), Query Frame = 1
Query:   10 LVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVGLVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPHRVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFVSPAXXXXXXXXXXXXXXXAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSVTKAM---LLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQAAVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAFTPSLWDALKLTIAVANE 951
            L+VETL +A L  S     Q Y    L  L +   + + PA+A  V L+FR++P +   A + F    +H L+N E+KW  W  +++ +E  +D P R+FV++V +  VRLSY+  ++  LP+  H LLPP+P     F                    +     ++    A A+R+WL+            P   +++A    ++   IL AG  T TH    L++YG     F      ADE +A +  VV  V  VW  +PQ   L    +LR+ ++ P+   A+ ++ +     ++ P +W+ L  T+ +  +
Sbjct:  462 LLVETLLVAALGESTIAK-QTYYCSVLYHLVKTDAQAMSPALAVEVELLFREVPTMRAAAVESFVLLLSHFLSNFEFKWR-WAAWSYVLEASEDDPQRLFVSSVIERCVRLSYLQHMQNALPEDFHVLLPPAPKPRIHFKPIKEDDAVKDEASPASDFYQSVTTKLKGHPPALALRSWLNEA---------LPRLEISRAEAVEIVWTCILEAGAATFTHLRLLLEKYGKRNELFGSDNQPADETDADELVVVKTVASVWLLSPQHIGLILNAMLRQNLLRPSTIVAWAVTSDAVQQYSW-PYMWEILNDTLQLVQD 766          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5275.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ4_ECTSI2.750e-5137.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9J1_9STRA1.230e-3834.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3YHQ8_HETAK6.620e-3735.15Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V2Z0_9STRA3.550e-3347.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835V8X8_VANPL6.650e-2628.30Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A097PNN0_CINCA8.080e-2528.57ABH1 (Fragment) n=1 Tax=Cinnamomum camphora TaxID=... [more]
A0A7C8ZCF6_OPUST8.940e-2526.52Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A443NDD5_9MAGN2.060e-2428.48Nuclear cap-binding protein subunit 1 n=2 Tax=Magn... [more]
A0A6J1DLR3_MOMCH3.210e-2428.48nuclear cap-binding protein subunit 1 n=8 Tax=Cucu... [more]
A0A0P1AD86_PLAHL3.250e-2427.76Nuclear cap-binding protein n=1 Tax=Plasmopara hal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5275contigP-wetherbeei_contig5275:1204..2211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFZ4
Preferred nameNCBP1
PFAMsMIF4G,MIF4G_like,MIF4G_like_2
Model size951
Max annot lvl2759|Eukaryota
KEGG koko:K12882,ko:K13288
KEGG Pathwayko03008,ko03013,ko03015,ko03040,map03008,map03013,map03015,map03040
KEGG ModuleM00399
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000184,GO:0000243,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009314,GO:0009416,GO:0009452,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030307,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033036,GO:0033120,GO:0033993,GO:0034248,GO:0034470,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040008,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043484,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048026,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0048571,GO:0048573,GO:0048574,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051098,GO:0051099,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097305,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Exons2
Evalue4.51e-52
EggNOG OGsKOG1104@1|root,KOG1104@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-21_005180.1
Descriptionprimary miRNA processing
Cds size951
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.493909-CDS-P-wetherbeei_contig5275:1203..16871683186790.493909-CDS-P-wetherbeei_contig5275:1203..1687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5275 1204..1687 +
1683186790.5085168-CDS-P-wetherbeei_contig5275:1744..22111683186790.5085168-CDS-P-wetherbeei_contig5275:1744..2211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5275 1745..2211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5275.2.1prot_P-wetherbeei_contig5275.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5275 1204..2211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5275.2.1

>prot_P-wetherbeei_contig5275.2.1 ID=prot_P-wetherbeei_contig5275.2.1|Name=mRNA_P-wetherbeei_contig5275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
AATLVVETLFLALLQTSQPRHMQPYLHRTLMELCREAPKTVPPAVARGVG
LVFRKLPGLDPLAAQQFASWFAHHLANSEYKWPFWQHFAFAVELPQDHPH
RVFVATVFDALVRLSYVDRIKETLPKSLHTLLPPSPVSVAVFVSPAAAGA
GAAAAGAAGAAAEETERLVRSKEEADAVRTWLDSVRVADGSGAEFPADSV
TKAMLLTHAILRAGDKTPTHTSAGLDRYGALLAEFCRGGGAADEVEAGQA
AVVSMVGEVWQQAPQWFVLATGMLLRRGVVSPTVAAAYVLSDENSNGLAF
TPSLWDALKLTIAVANE
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mRNA from alignment at P-wetherbeei_contig5275:1204..2211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5275.2.1 ID=mRNA_P-wetherbeei_contig5275.2.1|Name=mRNA_P-wetherbeei_contig5275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig5275:1204..2211+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGACGCTGGTGGTGGAGACGCTCTTCTTGGCGCTGCTTCAGACATC GCAGCCCCGGCACATGCAGCCGTACCTCCACCGGACGCTCATGGAGCTGT GCCGGGAGGCGCCCAAGACAGTGCCACCGGCCGTCGCCCGCGGCGTCGGG CTCGTCTTCCGCAAGCTGCCGGGCCTGGATCCGCTGGCAGCACAGCAGTT TGCGTCGTGGTTCGCGCACCACCTGGCGAATTCGGAGTACAAGTGGCCCT TCTGGCAGCACTTCGCCTTCGCGGTCGAGCTGCCGCAGGACCACCCTCAT CGCGTCTTCGTTGCCACCGTCTTCGACGCGCTCGTGCGCCTCAGCTATGT CGACCGCATCAAGGAGACCCTACCCAAGTCGCTGCACACTCTGCTGCCGC CATCGCCGGTCTCGGTCGCCGTCTTTGTGTCACCCGCCGCCGCGGGAGCC GGAGCTGCCGCCGCGGGTGCCGCTGGGGCTGCGGGTGACGCGGCGGCTGC GGCGGCGCCAGCGGGCGTAGAGGCGCCGCTCGCACAGGCAGCCGAAGAGA CGGAGCGGCTCGTCCGCAGCAAGGAGGAGGCAGACGCGGTCCGGACGTGG CTGGACAGCGTGCGGGTGGCAGACGGCAGCGGCGCGGAATTTCCTGCGGA CTCCGTCACCAAGGCGATGCTATTGACGCACGCCATCCTGCGGGCGGGCG ACAAGACGCCGACGCACACGTCGGCCGGGCTGGATCGTTACGGGGCGCTC CTGGCCGAGTTCTGCCGCGGCGGCGGCGCGGCGGATGAGGTGGAGGCCGG GCAGGCAGCCGTGGTGAGCATGGTCGGGGAAGTGTGGCAGCAGGCGCCGC AGTGGTTTGTGTTGGCGACCGGTATGCTGCTGCGGCGCGGCGTCGTATCG CCGACGGTGGCGGCGGCCTACGTGCTCTCGGACGAGAACAGCAATGGCCT CGCCTTCACGCCGAGCCTCTGGGATGCTTTAAAGCTCACCATTGCCGTCG CCAACGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5275:1204..2211+

>mRNA_P-wetherbeei_contig5275.2.1 ID=mRNA_P-wetherbeei_contig5275.2.1|Name=mRNA_P-wetherbeei_contig5275.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig5275:1204..2211+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGACGCTGGTGGTGGAGACGCTCTTCTTGGCGCTGCTTCAGACATC
GCAGCCCCGGCACATGCAGCCGTACCTCCACCGGACGCTCATGGAGCTGT
GCCGGGAGGCGCCCAAGACAGTGCCACCGGCCGTCGCCCGCGGCGTCGGG
CTCGTCTTCCGCAAGCTGCCGGGCCTGGATCCGCTGGCAGCACAGCAGTT
TGCGTCGTGGTTCGCGCACCACCTGGCGAATTCGGAGTACAAGTGGCCCT
TCTGGCAGCACTTCGCCTTCGCGGTCGAGCTGCCGCAGGACCACCCTCAT
CGCGTCTTCGTTGCCACCGTCTTCGACGCGCTCGTGCGCCTCAGCTATGT
CGACCGCATCAAGGAGACCCTACCCAAGTCGCTGCACACTCTGCTGCCGC
CATCGCCGGTCTCGGTCGCCGTCTTTGTGTCACCCGCCGCCGCGGGAGCC
GGAGCTGCCGCCGCGGGTGCCGCTGGGGCTGCGGCCGAAGAGACGGAGCG
GCTCGTCCGCAGCAAGGAGGAGGCAGACGCGGTCCGGACGTGGCTGGACA
GCGTGCGGGTGGCAGACGGCAGCGGCGCGGAATTTCCTGCGGACTCCGTC
ACCAAGGCGATGCTATTGACGCACGCCATCCTGCGGGCGGGCGACAAGAC
GCCGACGCACACGTCGGCCGGGCTGGATCGTTACGGGGCGCTCCTGGCCG
AGTTCTGCCGCGGCGGCGGCGCGGCGGATGAGGTGGAGGCCGGGCAGGCA
GCCGTGGTGAGCATGGTCGGGGAAGTGTGGCAGCAGGCGCCGCAGTGGTT
TGTGTTGGCGACCGGTATGCTGCTGCGGCGCGGCGTCGTATCGCCGACGG
TGGCGGCGGCCTACGTGCTCTCGGACGAGAACAGCAATGGCCTCGCCTTC
ACGCCGAGCCTCTGGGATGCTTTAAAGCTCACCATTGCCGTCGCCAACGA
A
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