mRNA_P-wetherbeei_contig52732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52732.1.1
Unique NamemRNA_P-wetherbeei_contig52732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A4V3DDP4_9PROT (Phosphoenolpyruvate carboxylase n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4V3DDP4_9PROT)

HSP 1 Score: 293 bits (750), Expect = 3.500e-90
Identity = 153/181 (84.53%), Postives = 166/181 (91.71%), Query Frame = 1
Query:    1 LELIERALELTKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            LELIERAL L ++   RR+L+ILRAE+ NHGLGMAHTHVRLNAVQIHNAIRKLI+MET PDDPARKRSY+AA  +LL+DVKPV+INFASILAERTSAKRLFMIVA+MLKYIDA  PVRFLIAE+ESPLTLLAALYFAKLFGV  KVDISPLFETTKAFERG+RVIDECLQNP YAAYVR R
Sbjct:  399 LELIERALSLCEKPEHRRQLIILRAEIGNHGLGMAHTHVRLNAVQIHNAIRKLINMETAPDDPARKRSYMAALARLLKDVKPVQINFASILAERTSAKRLFMIVAKMLKYIDANVPVRFLIAETESPLTLLAALYFAKLFGVADKVDISPLFETTKAFERGVRVIDECLQNPTYAAYVRAR 579          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A5C7NY52_9PROT (Phosphoenolpyruvate carboxylase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NY52_9PROT)

HSP 1 Score: 284 bits (727), Expect = 8.760e-87
Identity = 145/181 (80.11%), Postives = 165/181 (91.16%), Query Frame = 1
Query:    1 LELIERALELTKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            LEL+ RAL+LT + + RRKLLILRAEL NHGLGMAHTHVRLN+VQIHNA+RKLIDMETEP DP RKR+YLA+  +LL DV+P+ I+FAS++AERTSAKRLFMIVAQMLKYID TTPVRFLIAE E+PLTLLAALYFAKLFGV+ ++DISPLFETTKAFERGIRVIDECLQNP +A YVR+R
Sbjct:  418 LELVRRALDLTGKPSVRRKLLILRAELGNHGLGMAHTHVRLNSVQIHNAVRKLIDMETEPGDPTRKRTYLASISRLLTDVRPMSISFASVMAERTSAKRLFMIVAQMLKYIDTTTPVRFLIAECEAPLTLLAALYFAKLFGVDHRLDISPLFETTKAFERGIRVIDECLQNPSFADYVRKR 598          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A2E6QF42_9PROT (Phosphoenolpyruvate carboxylase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QF42_9PROT)

HSP 1 Score: 229 bits (584), Expect = 1.010e-66
Identity = 118/180 (65.56%), Postives = 144/180 (80.00%), Query Frame = 1
Query:    4 ELIERALELTKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            E +ERA+ L      +R+L +LRAEL NHGL +AH HVRLNA+Q+HNA+RKLI ++  PDDPAR+RS+LAA  +L+  V PV INF S+LAE+ SAKRLFM+VAQ++KY+DATTPVRFLIAE ESP TLL ALY+A+LFGVE +VDISPLFET +AFERG  VI+  L NP Y AYVR R
Sbjct:  381 ERLERAIGLAHGEDAKRRLCVLRAELVNHGLSLAHMHVRLNAMQLHNAVRKLIGIDGAPDDPARRRSHLAAITELIDKVDPVTINFGSMLAEQASAKRLFMLVAQIIKYVDATTPVRFLIAECESPFTLLTALYYARLFGVERQVDISPLFETIRAFERGPEVIEGALANPHYRAYVRAR 560          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: UPI0013C499D4 (phosphoenolpyruvate carboxylase n=1 Tax=Indioceanicola profundi TaxID=2220096 RepID=UPI0013C499D4)

HSP 1 Score: 229 bits (584), Expect = 1.140e-66
Identity = 120/188 (63.83%), Postives = 146/188 (77.66%), Query Frame = 1
Query:    1 LELIERALELTKRAADR-------RKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            +ELI+RA+ LT  AA          +L +LRAEL N+GLGMAHTHVR+N+ Q+HNAIRK + METEPDDP  ++S+L    +LL  V+P KINF SI+AERTSAKRLFM+VAQMLKY DATTPVRFL+AESES  T+L ALY+A+LFGV+ +VDISPLFET KA E G RVI++ L NP Y  YVR+R
Sbjct:  393 IELIDRAIRLTGEAAQDAAAADTVERLAVLRAELANYGLGMAHTHVRINSTQLHNAIRKTVGMETEPDDPRYRQSFLTKVTELLDGVRPAKINFGSIIAERTSAKRLFMVVAQMLKYSDATTPVRFLVAESESAFTVLTALYYARLFGVDDRVDISPLFETEKALEVGSRVIEQLLDNPHYRDYVRRR 580          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: UPI000DF2F882 (phosphoenolpyruvate carboxylase n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF2F882)

HSP 1 Score: 224 bits (570), Expect = 8.980e-65
Identity = 113/163 (69.33%), Postives = 135/163 (82.82%), Query Frame = 1
Query:   55 KLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            +LL+LRAEL N GLGMAHTHVR+N+ Q+HNAIRK + +ET PDDP  ++SYL A  +LL  V+PV+INF S++AERTSAKRLFM+VAQMLKY DATTPVRFLIAESES  T+L+ALYFA+LFGV  ++DISPLFET KA E G RVI++ L NP Y  YVRQR
Sbjct:  398 RLLVLRAELANFGLGMAHTHVRINSTQVHNAIRKTVGLETSPDDPRYRQSYLNALTELLDRVEPVRINFGSVMAERTSAKRLFMLVAQMLKYSDATTPVRFLIAESESAFTVLSALYFARLFGVADRLDISPLFETEKALEVGSRVIEQLLDNPHYRQYVRQR 560          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: UPI001A9761D8 (phosphoenolpyruvate carboxylase n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A9761D8)

HSP 1 Score: 224 bits (570), Expect = 1.020e-64
Identity = 118/186 (63.44%), Postives = 144/186 (77.42%), Query Frame = 1
Query:    4 ELIERALELTKRAADR------RKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            ELI+RA+ LT  AAD       R+L +LRA+L  HGLG+AHTHVR+NA Q+HNAIRK + MET PDDP  ++SYL A  +LL  V+P  +NF S+LAERTSAKRLFM++AQMLKY DA TPVRFLIAE E+  T L ALY+A+LFGVE +VDISPLFET +A E G RVI++ L+NP Y AYVR+R
Sbjct:  389 ELIDRAIRLTL-AADEIAPEAVRRLCVLRADLAGHGLGLAHTHVRINATQLHNAIRKTVGMETAPDDPRFRQSYLNAVNELLDSVEPASVNFGSLLAERTSAKRLFMLIAQMLKYADAGTPVRFLIAECETAFTALTALYYARLFGVEDRVDISPLFETERALEVGSRVIEQLLENPHYRAYVRRR 573          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A0N1BUS0_9PROT (Phosphoenolpyruvate carboxylase n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1BUS0_9PROT)

HSP 1 Score: 219 bits (558), Expect = 4.190e-63
Identity = 113/175 (64.57%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   19 ALELTKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            A+E  K  A   +L +LRAEL   GLGMAHTHVRLN+ Q+HNAIRK + ++T  DDP  ++SYLA    LL  V+PV INF S++AERTSAKRLFM+VAQMLKY DA TP+RFLIAESES  T+L+ALYFAKLFGVE +VDISPLFET KA E G R+I++ L+NP Y AYV++R
Sbjct:  387 AIEGDKALATVEQLAVLRAELATFGLGMAHTHVRLNSTQVHNAIRKAVGLDTAADDPRYRQSYLATLTDLLDKVEPVSINFGSVVAERTSAKRLFMVVAQMLKYSDARTPIRFLIAESESAFTVLSALYFAKLFGVEERVDISPLFETEKALETGSRIIEQLLENPHYRAYVQKR 561          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: W9GYP4_9PROT (Phosphoenolpyruvate carboxylase n=5 Tax=Skermanella TaxID=204447 RepID=W9GYP4_9PROT)

HSP 1 Score: 219 bits (558), Expect = 4.230e-63
Identity = 119/184 (64.67%), Postives = 140/184 (76.09%), Query Frame = 1
Query:    7 LIERALEL-----TKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            LI+R ++L     T R    R+L  LRAEL N+GLGMAHTHVR+NA Q+HNAIRK + MET PDDP  ++SYL +  +LL  V+P  INF SI++ERTS+KRLFMIVAQMLKY DATTPVRFLIAE ES  T L ALY+A+LFGV  KVDISPLFET KA E G RVID+ L+NP Y AYV+ R
Sbjct:  377 LIDRVIKLATADGTARDPAIRRLCSLRAELANYGLGMAHTHVRINATQLHNAIRKTVGMETAPDDPRYRQSYLTSLNELLDKVEPRTINFGSIMSERTSSKRLFMIVAQMLKYADATTPVRFLIAECESAFTPLTALYYARLFGVADKVDISPLFETEKALELGSRVIDQLLENPHYRAYVQAR 560          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A248JV84_9PROT (Phosphoenolpyruvate carboxylase n=13 Tax=Azospirillaceae TaxID=2829815 RepID=A0A248JV84_9PROT)

HSP 1 Score: 218 bits (554), Expect = 1.940e-62
Identity = 110/164 (67.07%), Postives = 133/164 (81.10%), Query Frame = 1
Query:   52 RKLLILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            R+L IL+AEL N+GLG AHTHVR+NA Q+HNA+RK + MET PDDP  ++SYL A   LL +V+PV+INF SI+AERTSAKRLFM+VAQMLKY DA+ PVRFLIAESES  T+L ALY+A+LFGV  KVDISPLFET +A E G RVI++ L NP Y  YV++R
Sbjct:  454 RRLAILKAELSNYGLGQAHTHVRINATQLHNAVRKTVGMETAPDDPRYRQSYLNAITGLLDEVRPVRINFGSIIAERTSAKRLFMVVAQMLKYADASVPVRFLIAESESAFTVLTALYYARLFGVADKVDISPLFETERALEVGSRVIEQLLDNPHYRDYVKRR 617          
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Match: A0A5J6MHD4_9PROT (Phosphoenolpyruvate carboxylase n=1 Tax=Hypericibacter terrae TaxID=2602015 RepID=A0A5J6MHD4_9PROT)

HSP 1 Score: 217 bits (552), Expect = 2.800e-62
Identity = 106/160 (66.25%), Postives = 130/160 (81.25%), Query Frame = 1
Query:   64 ILRAELCNHGLGMAHTHVRLNAVQIHNAIRKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRLFMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISPLFETTKAFERGIRVIDECLQNPDYAAYVRQR 543
            +L AE+ NHGLG+AH HVRLNA Q+HNAIR+ I ME  PDDP+R+RS+  A   LL  VKP  INF S++AERTSAKRLFM+VAQ LKYIDATTP+RFLIAE E+  TLL AL++A++FGVE ++DISPLFET KAFER  R++D+ L NP YAAY+R+R
Sbjct:  398 VLLAEVLNHGLGLAHIHVRLNATQLHNAIRREIGMEGAPDDPSRRRSFHTAINALLSQVKPASINFGSLMAERTSAKRLFMLVAQFLKYIDATTPIRFLIAECETSFTLLTALHYARMFGVEDRIDISPLFETIKAFERAPRILDDALANPHYAAYLRKR 557          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V3DDP4_9PROT3.500e-9084.53Phosphoenolpyruvate carboxylase n=1 Tax=Dongia mob... [more]
A0A5C7NY52_9PROT8.760e-8780.11Phosphoenolpyruvate carboxylase n=1 Tax=Rhodospiri... [more]
A0A2E6QF42_9PROT1.010e-6665.56Phosphoenolpyruvate carboxylase n=1 Tax=Rhodospiri... [more]
UPI0013C499D41.140e-6663.83phosphoenolpyruvate carboxylase n=1 Tax=Indioceani... [more]
UPI000DF2F8828.980e-6569.33phosphoenolpyruvate carboxylase n=1 Tax=Oleisoliba... [more]
UPI001A9761D81.020e-6463.44phosphoenolpyruvate carboxylase n=1 Tax=Arenibacul... [more]
A0A0N1BUS0_9PROT4.190e-6364.57Phosphoenolpyruvate carboxylase n=5 Tax=Alphaprote... [more]
W9GYP4_9PROT4.230e-6364.67Phosphoenolpyruvate carboxylase n=5 Tax=Skermanell... [more]
A0A248JV84_9PROT1.940e-6267.07Phosphoenolpyruvate carboxylase n=13 Tax=Azospiril... [more]
A0A5J6MHD4_9PROT2.800e-6266.25Phosphoenolpyruvate carboxylase n=1 Tax=Hypericiba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52732contigP-wetherbeei_contig52732:1..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1380391.JIAS01000011_gene5253
PFAMsPEPcase
Model size543
Max annot lvl204441|Rhodospirillales
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.21e-87
EggNOG OGsCOG2352@1|root,COG2352@2|Bacteria,1PUWX@1224|Proteobacteria,2V6ES@28211|Alphaproteobacteria,2JQ3G@204441|Rhodospirillales
EC4.1.1.31
DescriptionPhosphoenolpyruvate carboxylase
Cds size543
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.2944615-CDS-P-wetherbeei_contig52732:0..5431683186790.2944615-CDS-P-wetherbeei_contig52732:0..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52732 1..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52732.1.1prot_P-wetherbeei_contig52732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52732 1..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52732.1.1

>prot_P-wetherbeei_contig52732.1.1 ID=prot_P-wetherbeei_contig52732.1.1|Name=mRNA_P-wetherbeei_contig52732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
LELIERALELTKRAADRRKLLILRAELCNHGLGMAHTHVRLNAVQIHNAI
RKLIDMETEPDDPARKRSYLAAAGKLLRDVKPVKINFASILAERTSAKRL
FMIVAQMLKYIDATTPVRFLIAESESPLTLLAALYFAKLFGVEAKVDISP
LFETTKAFERGIRVIDECLQNPDYAAYVRQR
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mRNA from alignment at P-wetherbeei_contig52732:1..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52732.1.1 ID=mRNA_P-wetherbeei_contig52732.1.1|Name=mRNA_P-wetherbeei_contig52732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52732:1..543+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGCTGATCGAGCGCGCGCTGGAACTGACCAAGCGCGCCGCCGACCG GCGCAAGCTGCTGATCCTGCGCGCCGAGCTGTGCAATCACGGGCTCGGCA TGGCGCATACCCACGTGCGGCTGAACGCGGTGCAGATCCACAACGCCATC CGCAAGCTGATCGACATGGAGACCGAGCCGGACGATCCCGCGCGCAAGCG CTCCTATCTCGCCGCCGCCGGCAAGCTGCTGCGCGACGTGAAGCCGGTGA AGATCAACTTCGCCTCGATCCTGGCGGAGCGCACGTCGGCCAAGCGCCTG TTCATGATCGTGGCGCAGATGCTCAAATACATCGATGCCACCACGCCGGT GCGGTTCCTGATCGCCGAAAGCGAATCGCCGCTGACCCTGCTGGCGGCGC TCTATTTCGCCAAGCTGTTCGGGGTCGAGGCCAAGGTCGACATCTCGCCC TTGTTCGAGACCACCAAGGCGTTCGAGCGCGGCATCCGCGTGATCGACGA ATGCCTGCAGAACCCGGACTATGCCGCCTATGTGCGGCAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52732:1..543+

>mRNA_P-wetherbeei_contig52732.1.1 ID=mRNA_P-wetherbeei_contig52732.1.1|Name=mRNA_P-wetherbeei_contig52732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52732:1..543+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGCTGATCGAGCGCGCGCTGGAACTGACCAAGCGCGCCGCCGACCG
GCGCAAGCTGCTGATCCTGCGCGCCGAGCTGTGCAATCACGGGCTCGGCA
TGGCGCATACCCACGTGCGGCTGAACGCGGTGCAGATCCACAACGCCATC
CGCAAGCTGATCGACATGGAGACCGAGCCGGACGATCCCGCGCGCAAGCG
CTCCTATCTCGCCGCCGCCGGCAAGCTGCTGCGCGACGTGAAGCCGGTGA
AGATCAACTTCGCCTCGATCCTGGCGGAGCGCACGTCGGCCAAGCGCCTG
TTCATGATCGTGGCGCAGATGCTCAAATACATCGATGCCACCACGCCGGT
GCGGTTCCTGATCGCCGAAAGCGAATCGCCGCTGACCCTGCTGGCGGCGC
TCTATTTCGCCAAGCTGTTCGGGGTCGAGGCCAAGGTCGACATCTCGCCC
TTGTTCGAGACCACCAAGGCGTTCGAGCGCGGCATCCGCGTGATCGACGA
ATGCCTGCAGAACCCGGACTATGCCGCCTATGTGCGGCAGCGC
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