mRNA_P-wetherbeei_contig5272.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5272.2.1
Unique NamemRNA_P-wetherbeei_contig5272.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: D7FZL0_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 9.800e-36
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSR--EVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKV 336
            QLGYRMGMAA+L  W++WDC  E  G     +VS++  PAF  YRA+ G+LLL WCWG+S L     VW R RINY+YLFD+D R + SPL+VFN+ + ET+V+ ANLLLYYKV
Sbjct:  267 QLGYRMGMAAVLAFWILWDCCLEPEGDDPGWQVSVLLHPAFPVYRALAGILLLRWCWGLSSL-----VWGRARINYIYLFDMDPRAVSSPLQVFNNVAAETVVYLANLLLYYKV 375          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A835YP28_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP28_9STRA)

HSP 1 Score: 136 bits (342), Expect = 6.630e-35
Identity = 64/114 (56.14%), Postives = 81/114 (71.05%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
            QLGY +G+AA+L  W+VWDC  EV     +VS++GQPAFR +RAV GLLLLHW W  S+L      WTRTRIN+LYLF+LD R+   PL +FN  + ET+VF A LL YYK ++
Sbjct:  418 QLGYHLGIAAILAFWVVWDCCVEVAKKGEDVSVMGQPAFRVFRAVAGLLLLHWAWAFSVL-----YWTRTRINFLYLFELDPRHQSPPLALFNDVAGETVVFLACLLAYYKAQV 526          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A835ZE89_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE89_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.130e-33
Identity = 67/149 (44.97%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRS-----------------------------------PLEVFNSASVETIVFFANLLLYYKVKM 342
            QLGY +G+AA+L  W+VWDC  EV+    +VS++GQPAFR YR V GLLLLHW WG S+L     VWTRTRIN++YLF+LD R+  +                                   P+ +FN A++ET+VF ANLL YYK +M
Sbjct:  386 QLGYHLGIAAVLAFWVVWDCCVEVFKRGEDVSVMGQPAFRVYRGVAGLLLLHWAWGFSVL-----VWTRTRINFIYLFELDPRHQMTWCIXXXXXXXXXXXXQPKXXXXXXXXXXXXXXXAPPISIFNDAALETVVFLANLLAYYKAQM 529          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S1UZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZJ6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.530e-29
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 LGYRMGMAALLVMWLVWDCIEEVWGSSRE--VSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
            +GYR+GM A+L +W+ WDCI   WG  R    +I G+ AF  +R  GGLLLLHW WG S+      VW R RINY++LFDLD R + SP+ +FN    ET+VF   +LLYYK
Sbjct:    1 MGYRLGMCAILTLWVAWDCI---WGYVRNGNSTIGGRTAFPVFRGCGGLLLLHWFWGASVY-----VWNRFRINYIFLFDLDPRTVDSPITIFNDVVDETLVFMFLMLLYYK 104          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S4MNN5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNN5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 7.290e-28
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
            +LGYRMGM ++L +W+ WDCI   WG  +    +I G+ AF  +RA GGLLLLHW WG S+      VWTR RINY++LFD + R + +P+ +FN    ET+VFF  +LLYYK
Sbjct:  421 RLGYRMGMCSILALWVCWDCI---WGLVADGNTTIGGRSAFPVFRACGGLLLLHWFWGTSVY-----VWTRYRINYIFLFDFNPRIVDTPMNIFNETVDETLVFFICMLLYYK 525          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: B8LC07_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC07_THAPS)

HSP 1 Score: 115 bits (288), Expect = 7.720e-28
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYK 333
            +LGYR+GM ++L +W+ WDC   VWG  S  +VSI G+ AF  +R   GLL  HW WG+S+      VW+R RINY+YLF+ D RN+ +P+++FN A  ET VF  ++L+YYK
Sbjct:  390 RLGYRLGMCSILALWVAWDC---VWGQFSKGQVSIGGRSAFPVFRGCFGLLAWHWFWGMSVY-----VWSRYRINYIYLFEFDPRNVDTPIDIFNDAVDETFVFLVSMLMYYK 494          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A1E7FGD3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGD3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.570e-27
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWG--SSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
            QLGYR+GM A+L +W+ WDCI   WG  +  + +I  +PAF  +RA GGLLLL W WG S+      +W R R+NY++LFD + R + +P+ +   A   T+++ + +LLYYKV+M
Sbjct:   51 QLGYRLGMCAILALWVAWDCI---WGLIAKGKSTIGSRPAFAVFRACGGLLLLQWFWGFSVF-----MWNRYRVNYIFLFDFNPRIVSTPVGIVKDAVDNTLLYMSLMLLYYKVRM 158          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A1E7FCH7_9STRA (EXS domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCH7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.380e-27
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSRE-VSIVGQ-PAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVKM 342
            QLGYRMG+ A+L +W+ WDC   VWG  +   S +G+  AF  +RA GGLLLL W WG S+      VWTR RINY++LFD     + +P ++F +A   T++F   +LLYYKV+M
Sbjct:    7 QLGYRMGVCAVLAVWVCWDC---VWGLVKNGYSTIGERAAFPIFRACGGLLLLQWYWGCSVF-----VWTRYRINYIFLFDFVPSTISTPFDIFCAAVDNTLLFMILMLLYYKVRM 114          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: A0A7S4RIS9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RIS9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.120e-26
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSRE--VSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKVK 339
            +LGYR+GM  +L +W+ WDCI   WG  ++   +I G+PAF  +RA  GLLL+HW WG+S+      VWTR RINY+YLFD + R + +P+ ++N    ET+VF   +LLYYKV+
Sbjct:  436 RLGYRLGMCFILSLWVCWDCI---WGLVKDGNSTIGGRPAFPVFRAGAGLLLVHWFWGLSVF-----VWTRHRINYIYLFDFNPRIVDTPITIYNDCVDETLVFLILMLLYYKVR 542          
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Match: W7TDD1_9STRA (Xenotropic and polytropic murine leukemia virus receptor xpr1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDD1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.710e-25
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 QLGYRMGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCWGVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFANLLLYYKV 336
            QLGY++G+AA L +W+VWDC+ +V     + +IV + AF  +RAVGGLLLLHWCWG+ I   C  +    RIN++YL DL  +N+ SP ++F+ A  E+IV+   +LLYYKV
Sbjct:  341 QLGYKLGVAATLALWVVWDCVVQV-AKFGKPTIVTKMAFPVFRAVGGLLLLHWCWGI-IEHFCNYL----RINFVYLLDLSPKNVSSPRKIFDEAVNESIVYLTCMLLYYKV 446          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5272.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL0_ECTSI9.800e-3657.89SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YP28_9STRA6.630e-3556.14EXS family-domain-containing protein n=1 Tax=Tribo... [more]
A0A835ZE89_9STRA2.130e-3344.97EXS family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S1UZJ6_9STRA8.530e-2950.89Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4MNN5_9STRA7.290e-2850.44Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
B8LC07_THAPS7.720e-2848.67Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A1E7FGD3_9STRA4.570e-2743.97Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1E7FCH7_9STRA5.380e-2747.41EXS domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4RIS9_9STRA1.120e-2647.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
W7TDD1_9STRA6.710e-2549.11Xenotropic and polytropic murine leukemia virus re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5272contigP-wetherbeei_contig5272:2822..3355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZL0
PFAMsEXS,SPX
Model size342
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons2
Evalue4.02e-32
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Descriptionphosphate ion transport
Cds size327
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.1522396-CDS-P-wetherbeei_contig5272:2821..29681683186790.1522396-CDS-P-wetherbeei_contig5272:2821..2968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5272 2822..2968 -
1683186790.1634703-CDS-P-wetherbeei_contig5272:3160..33401683186790.1634703-CDS-P-wetherbeei_contig5272:3160..3340Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5272 3161..3340 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.1773977-UTR-P-wetherbeei_contig5272:3340..33551683186790.1773977-UTR-P-wetherbeei_contig5272:3340..3355Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5272 3341..3355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5272.2.1prot_P-wetherbeei_contig5272.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5272 2822..3340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5272.2.1

>prot_P-wetherbeei_contig5272.2.1 ID=prot_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MGMAALLVMWLVWDCIEEVWGSSREVSIVGQPAFRAYRAVGGLLLLHWCW
GVSILASCGGVWTRTRINYLYLFDLDMRNMRSPLEVFNSASVETIVFFAN
LLLYYKVKM
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mRNA from alignment at P-wetherbeei_contig5272:2822..3355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5272.2.1 ID=mRNA_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2822..3355- (Phaeothamnion wetherbeei SAG_119_79)
CAGCTGGGGTACCGGATGGGCATGGCGGCACTGCTGGTCATGTGGCTGGT GTGGGACTGCATCGAGGAGGTGTGGGGCTCCTCGCGCGAGGTCAGCATCG TCGGGCAGCCCGCCTTCCGCGCCTACCGCGCCGTCGGGGGCCTGCTGCTG CTGCACTGGTGCTGGGGCGTCTCCATCCTGGCGAGTTGTGGAGGGGTGGA AAAACGTGCTGCGGCATTGCAGTGGCGAATGAAAGAGGTTGCGGCGGCCT TTGCATGCTTCATTTCTTGCGCTCTTACCTCCTTTGCGTCTGTCCTTTTC TCCCTTCTTCCCCGTTTTCTCCCGTTTTCTTGTACCCCCGCTCTCGTTTT CTCACGTTCGCCTGCCGCCTTCTTTCTCCTCAACCAGGTGTGGACGCGGA CGCGCATCAACTACCTGTACCTGTTCGACCTCGACATGCGCAACATGCGC TCCCCGCTGGAAGTCTTCAACTCGGCCTCTGTCGAGACCATCGTCTTTTT CGCAAACCTCCTCCTCTACTACAAGGTGAAAATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5272:2822..3355-

>mRNA_P-wetherbeei_contig5272.2.1 ID=mRNA_P-wetherbeei_contig5272.2.1|Name=mRNA_P-wetherbeei_contig5272.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig5272:2822..3355- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATGGCGGCACTGCTGGTCATGTGGCTGGTGTGGGACTGCATCGA
GGAGGTGTGGGGCTCCTCGCGCGAGGTCAGCATCGTCGGGCAGCCCGCCT
TCCGCGCCTACCGCGCCGTCGGGGGCCTGCTGCTGCTGCACTGGTGCTGG
GGCGTCTCCATCCTGGCGAGTTGTGGAGGGGTGTGGACGCGGACGCGCAT
CAACTACCTGTACCTGTTCGACCTCGACATGCGCAACATGCGCTCCCCGC
TGGAAGTCTTCAACTCGGCCTCTGTCGAGACCATCGTCTTTTTCGCAAAC
CTCCTCCTCTACTACAAGGTGAAAATG
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