mRNA_P-wetherbeei_contig527.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig527.5.1
Unique NamemRNA_P-wetherbeei_contig527.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig527.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig527contigP-wetherbeei_contig527:3260..6156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2675
Hectar predicted targeting categoryother localisation
Exons2
Cds size2589
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.6223526-UTR-P-wetherbeei_contig527:3259..33451683186789.6223526-UTR-P-wetherbeei_contig527:3259..3345Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig527 3260..3345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.6326287-CDS-P-wetherbeei_contig527:3345..34231683186789.6326287-CDS-P-wetherbeei_contig527:3345..3423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig527 3346..3423 +
1683186789.642667-CDS-P-wetherbeei_contig527:3645..61561683186789.642667-CDS-P-wetherbeei_contig527:3645..6156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig527 3646..6156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig527.5.1prot_P-wetherbeei_contig527.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig527 3346..6156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig527.5.1

>prot_P-wetherbeei_contig527.5.1 ID=prot_P-wetherbeei_contig527.5.1|Name=mRNA_P-wetherbeei_contig527.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=863bp
MNVLKRRIAVYQTGRGLKKIWGEYIEARERGDAVAAANTRLALVDALDVA
DSELPAALDSLAADPREDLVAALLSVADGLPVGAPAVAKALAAAELCLRR
DAFRARAARQPPPTLLQPLLSLLWREGPGSNGSGSSSCSRANSVAPMVAA
HEKAAVLRLLRLAVQDDEACLEVARQQGYRAVMRLAGGTNTALYDAAAAN
EELTAEVLTTVRHCLMCYHERHPPPRRKRVRAAASGLRPPHTVDLAAAAA
SARGGAALVTTDADGAAAPPDSDGTAAAVGSAAPVGATMPPPTPLRRDLS
SSSLADAASYVYSSLYALVSGCETPGGGSRPTSGSWGGRSGGNGGSGSSG
SGKSRRSVVVVPPEVLREEGARLAELEGLLGGDGDHSAGGCGDRSNGGAY
GCSGGSRNDVNGDLPSPLPTLTAAASGNGEARISALQDAMADQGVLRWLA
ELLAEAGAVSGLGGYAGAGVRGSSSLELLKAVQLITWGNLGTQADFRALG
GYSGLAVPLLILAKAAADGSAGVLPRTAGAAATAAAGGAVASTSAAAAPA
GSSGTDSPASGSAAATPTPGTGARRSGGGGDGGASSATAGTVSPLDEGVG
AVLAMVLDGPPSGGARVNNLAALKLLVGLASSSRSLPAAVAAARALHSML
LVHPPNVVAFELCGGFDALMTVLSAAAAAGDGSSDSSGDGKGGRGDGDRN
ASASGDDRAGWTVTQHLRMLGAADDVLRLAALIASHRDVRALRSYAALLL
RLSSARFQFNATTDDARQREPSAAGLAAATGSAAAGPGSSSSFPAASAAA
MAPRWCLRCEESAVSRRCLHPECCGAATHLLCRDCDWEVHRPDAAAGHSH
IRVRVSPAVSFGG
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mRNA from alignment at P-wetherbeei_contig527:3260..6156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig527.5.1 ID=mRNA_P-wetherbeei_contig527.5.1|Name=mRNA_P-wetherbeei_contig527.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2897bp|location=Sequence derived from alignment at P-wetherbeei_contig527:3260..6156+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGAAAGGAGCAATGAAATGAGCGTGTAACAGGCGAGAAGGCGAGCAGT
ACGGGATTCGGCAAAGCGCCGATATCTTGCAGTGTAATGAACGTCCTTAA
ACGAAGAATCGCCGTTTACCAAACCGGCCGTGGACTAAAGAAGATATGGG
GAGAGTACATAGAGGTAAGTGGCACGTTTCGATAGCCTCTCGGCCTATTC
GTTGCCATTTCCACGTCCGCCAACGCCTAGGAAAGCCTCCAGTTTGAACG
AAGATGCCTCTCTGCTGTCGTCAACGAGCAAAAGCTTGCTTCTCCTTCTC
TTCTCCATAGAATTTTCTCTTACATGTCTGCTGTCATTGCTGGGACTGCT
GGCTTGTCTTCCTTCCTGCCAAAACTGCCACTACAGGCGCGAGAGCGCGG
CGACGCTGTCGCGGCTGCAAACACTCGGCTTGCCCTAGTGGACGCCCTCG
ACGTCGCCGATTCGGAGCTCCCCGCGGCGCTCGACAGTCTCGCGGCGGAC
CCTCGTGAGGACCTCGTAGCGGCGCTGCTGAGCGTTGCCGATGGCCTGCC
GGTGGGCGCACCCGCTGTAGCCAAGGCCCTCGCCGCCGCCGAGCTCTGTT
TGCGGCGCGACGCCTTCCGCGCGCGGGCCGCCCGCCAGCCGCCGCCGACA
CTGCTGCAGCCGCTGCTGTCTTTGCTATGGCGAGAGGGACCTGGCAGCAA
CGGGTCCGGTAGTAGCAGCTGCAGCCGTGCCAATTCTGTGGCGCCGATGG
TGGCGGCGCACGAAAAGGCGGCGGTGCTGCGGCTGCTCCGCCTGGCGGTG
CAGGACGACGAGGCGTGCCTCGAGGTGGCGCGGCAGCAGGGATACCGCGC
CGTTATGCGGCTGGCGGGAGGCACTAACACCGCTTTGTACGATGCTGCTG
CCGCTAACGAGGAGCTGACGGCAGAAGTACTGACGACGGTGCGGCACTGC
CTGATGTGCTACCATGAACGACACCCGCCACCGCGAAGGAAACGCGTCCG
CGCCGCCGCTTCGGGCTTGCGGCCGCCCCACACAGTTGACCTCGCTGCTG
CCGCCGCATCCGCTCGCGGCGGCGCCGCTCTTGTTACTACGGACGCTGAT
GGCGCTGCGGCCCCGCCAGATTCGGACGGTACAGCGGCGGCGGTCGGGTC
AGCAGCCCCGGTGGGCGCCACCATGCCGCCGCCCACGCCGCTGCGCCGCG
ATTTGTCGTCGTCGTCGCTCGCCGACGCCGCCAGCTATGTCTATAGCTCG
CTCTATGCCCTTGTCTCGGGCTGCGAGACGCCGGGGGGAGGCAGTCGACC
GACGTCGGGGTCATGGGGCGGCCGCAGTGGTGGCAACGGCGGCAGCGGGA
GCAGTGGCAGCGGGAAATCGCGACGCTCCGTCGTCGTCGTGCCGCCAGAG
GTGCTCCGGGAGGAAGGAGCGCGCCTCGCGGAGCTGGAGGGCCTGCTCGG
CGGCGATGGCGACCACAGCGCTGGTGGCTGCGGCGACCGCAGCAATGGCG
GCGCGTACGGCTGCAGCGGCGGGAGCCGGAATGATGTCAATGGAGACTTG
CCGTCGCCCCTGCCGACCCTGACGGCCGCGGCATCGGGAAACGGCGAGGC
CCGCATCTCGGCGCTTCAGGACGCAATGGCGGATCAAGGCGTACTGCGGT
GGCTCGCCGAGCTTTTGGCCGAAGCCGGTGCGGTCTCCGGCCTTGGTGGC
TATGCCGGCGCCGGTGTCCGCGGTTCTTCTTCCCTCGAGCTGCTGAAGGC
CGTGCAGCTCATCACATGGGGAAATCTTGGGACACAGGCCGACTTTCGGG
CGCTTGGCGGGTATTCGGGTCTGGCAGTGCCGCTCCTGATCCTAGCAAAA
GCTGCAGCGGACGGCAGCGCGGGGGTTCTGCCGCGAACGGCGGGCGCTGC
TGCGACGGCGGCGGCAGGAGGCGCCGTTGCCTCCACTTCTGCTGCCGCCG
CTCCCGCTGGTAGCAGCGGCACCGACAGCCCAGCGTCGGGTTCAGCTGCA
GCGACGCCCACGCCAGGCACTGGGGCACGTCGCAGCGGCGGCGGCGGCGA
CGGCGGCGCAAGTAGTGCCACAGCCGGCACCGTGTCGCCATTGGATGAAG
GGGTAGGTGCCGTTTTGGCAATGGTGCTGGACGGGCCCCCGAGCGGCGGC
GCCCGGGTTAACAACCTGGCAGCGCTGAAGCTGCTTGTGGGGCTGGCGTC
TTCATCGCGGTCGCTGCCGGCAGCGGTGGCGGCGGCGCGGGCACTCCACA
GCATGCTCCTGGTGCACCCTCCGAATGTGGTGGCATTCGAACTCTGCGGC
GGCTTCGATGCGCTCATGACCGTCCTGTCCGCCGCTGCGGCGGCTGGCGA
CGGTAGCAGTGACAGCAGCGGCGACGGCAAAGGCGGGAGGGGCGATGGCG
ATAGGAACGCTAGCGCCAGCGGTGACGACCGGGCAGGGTGGACTGTAACG
CAGCACCTGCGCATGCTAGGGGCGGCGGATGACGTCTTGCGGCTGGCGGC
CCTCATTGCCAGCCATCGGGACGTGCGTGCATTGCGATCGTACGCAGCGC
TGCTGTTACGGCTTTCGTCGGCACGTTTCCAGTTCAACGCGACCACCGAC
GACGCGAGGCAGCGGGAACCATCTGCCGCTGGACTTGCCGCCGCCACAGG
CTCCGCGGCAGCAGGACCTGGTTCCTCCTCTTCTTTCCCTGCTGCATCGG
CAGCAGCAATGGCACCAAGGTGGTGTCTTCGTTGCGAGGAGAGTGCCGTC
TCCCGAAGATGCCTGCACCCGGAGTGCTGCGGCGCGGCGACGCACCTCCT
CTGCCGGGACTGCGACTGGGAGGTGCATCGGCCCGACGCCGCTGCAGGCC
ACAGCCACATCCGTGTGCGCGTCAGCCCCGCCGTGTCCTTTGGTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig527:3260..6156+

>mRNA_P-wetherbeei_contig527.5.1 ID=mRNA_P-wetherbeei_contig527.5.1|Name=mRNA_P-wetherbeei_contig527.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2589bp|location=Sequence derived from alignment at P-wetherbeei_contig527:3260..6156+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGTCCTTAAACGAAGAATCGCCGTTTACCAAACCGGCCGTGGACT
AAAGAAGATATGGGGAGAGTACATAGAGGCGCGAGAGCGCGGCGACGCTG
TCGCGGCTGCAAACACTCGGCTTGCCCTAGTGGACGCCCTCGACGTCGCC
GATTCGGAGCTCCCCGCGGCGCTCGACAGTCTCGCGGCGGACCCTCGTGA
GGACCTCGTAGCGGCGCTGCTGAGCGTTGCCGATGGCCTGCCGGTGGGCG
CACCCGCTGTAGCCAAGGCCCTCGCCGCCGCCGAGCTCTGTTTGCGGCGC
GACGCCTTCCGCGCGCGGGCCGCCCGCCAGCCGCCGCCGACACTGCTGCA
GCCGCTGCTGTCTTTGCTATGGCGAGAGGGACCTGGCAGCAACGGGTCCG
GTAGTAGCAGCTGCAGCCGTGCCAATTCTGTGGCGCCGATGGTGGCGGCG
CACGAAAAGGCGGCGGTGCTGCGGCTGCTCCGCCTGGCGGTGCAGGACGA
CGAGGCGTGCCTCGAGGTGGCGCGGCAGCAGGGATACCGCGCCGTTATGC
GGCTGGCGGGAGGCACTAACACCGCTTTGTACGATGCTGCTGCCGCTAAC
GAGGAGCTGACGGCAGAAGTACTGACGACGGTGCGGCACTGCCTGATGTG
CTACCATGAACGACACCCGCCACCGCGAAGGAAACGCGTCCGCGCCGCCG
CTTCGGGCTTGCGGCCGCCCCACACAGTTGACCTCGCTGCTGCCGCCGCA
TCCGCTCGCGGCGGCGCCGCTCTTGTTACTACGGACGCTGATGGCGCTGC
GGCCCCGCCAGATTCGGACGGTACAGCGGCGGCGGTCGGGTCAGCAGCCC
CGGTGGGCGCCACCATGCCGCCGCCCACGCCGCTGCGCCGCGATTTGTCG
TCGTCGTCGCTCGCCGACGCCGCCAGCTATGTCTATAGCTCGCTCTATGC
CCTTGTCTCGGGCTGCGAGACGCCGGGGGGAGGCAGTCGACCGACGTCGG
GGTCATGGGGCGGCCGCAGTGGTGGCAACGGCGGCAGCGGGAGCAGTGGC
AGCGGGAAATCGCGACGCTCCGTCGTCGTCGTGCCGCCAGAGGTGCTCCG
GGAGGAAGGAGCGCGCCTCGCGGAGCTGGAGGGCCTGCTCGGCGGCGATG
GCGACCACAGCGCTGGTGGCTGCGGCGACCGCAGCAATGGCGGCGCGTAC
GGCTGCAGCGGCGGGAGCCGGAATGATGTCAATGGAGACTTGCCGTCGCC
CCTGCCGACCCTGACGGCCGCGGCATCGGGAAACGGCGAGGCCCGCATCT
CGGCGCTTCAGGACGCAATGGCGGATCAAGGCGTACTGCGGTGGCTCGCC
GAGCTTTTGGCCGAAGCCGGTGCGGTCTCCGGCCTTGGTGGCTATGCCGG
CGCCGGTGTCCGCGGTTCTTCTTCCCTCGAGCTGCTGAAGGCCGTGCAGC
TCATCACATGGGGAAATCTTGGGACACAGGCCGACTTTCGGGCGCTTGGC
GGGTATTCGGGTCTGGCAGTGCCGCTCCTGATCCTAGCAAAAGCTGCAGC
GGACGGCAGCGCGGGGGTTCTGCCGCGAACGGCGGGCGCTGCTGCGACGG
CGGCGGCAGGAGGCGCCGTTGCCTCCACTTCTGCTGCCGCCGCTCCCGCT
GGTAGCAGCGGCACCGACAGCCCAGCGTCGGGTTCAGCTGCAGCGACGCC
CACGCCAGGCACTGGGGCACGTCGCAGCGGCGGCGGCGGCGACGGCGGCG
CAAGTAGTGCCACAGCCGGCACCGTGTCGCCATTGGATGAAGGGGTAGGT
GCCGTTTTGGCAATGGTGCTGGACGGGCCCCCGAGCGGCGGCGCCCGGGT
TAACAACCTGGCAGCGCTGAAGCTGCTTGTGGGGCTGGCGTCTTCATCGC
GGTCGCTGCCGGCAGCGGTGGCGGCGGCGCGGGCACTCCACAGCATGCTC
CTGGTGCACCCTCCGAATGTGGTGGCATTCGAACTCTGCGGCGGCTTCGA
TGCGCTCATGACCGTCCTGTCCGCCGCTGCGGCGGCTGGCGACGGTAGCA
GTGACAGCAGCGGCGACGGCAAAGGCGGGAGGGGCGATGGCGATAGGAAC
GCTAGCGCCAGCGGTGACGACCGGGCAGGGTGGACTGTAACGCAGCACCT
GCGCATGCTAGGGGCGGCGGATGACGTCTTGCGGCTGGCGGCCCTCATTG
CCAGCCATCGGGACGTGCGTGCATTGCGATCGTACGCAGCGCTGCTGTTA
CGGCTTTCGTCGGCACGTTTCCAGTTCAACGCGACCACCGACGACGCGAG
GCAGCGGGAACCATCTGCCGCTGGACTTGCCGCCGCCACAGGCTCCGCGG
CAGCAGGACCTGGTTCCTCCTCTTCTTTCCCTGCTGCATCGGCAGCAGCA
ATGGCACCAAGGTGGTGTCTTCGTTGCGAGGAGAGTGCCGTCTCCCGAAG
ATGCCTGCACCCGGAGTGCTGCGGCGCGGCGACGCACCTCCTCTGCCGGG
ACTGCGACTGGGAGGTGCATCGGCCCGACGCCGCTGCAGGCCACAGCCAC
ATCCGTGTGCGCGTCAGCCCCGCCGTGTCCTTTGGTGGT
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