mRNA_P-wetherbeei_contig5268.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI) HSP 1 Score: 111 bits (277), Expect = 2.960e-23 Identity = 62/128 (48.44%), Postives = 86/128 (67.19%), Query Frame = 3
Query: 408 CQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGFRGVAV 791
C+ VD+I L ++LP+++ K + DAA + G FEV ++A+++ RR LL N +AL+TF GR ++L+ GAE L R P DVANLGQLLGLSQ ++ AV+ P +VLRRAEAR+ FRG V
Sbjct: 149 CKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSSNRRFLLSNCEALVTFTRGRGILLASGAETWLNCRSPHDVANLGQLLGLSQEQSLRAVSDTPLAVLRRAEARKGRFRGATV 276
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: A0A835ZCV8_9STRA (RNase P subunit p30-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCV8_9STRA) HSP 1 Score: 104 bits (260), Expect = 8.040e-23 Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 3
Query: 429 LIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGFRGVAVGKAMGG 809
+I +DL +LPY + H +A +FEVC +RS R+HL+ N + L+ F GR L+LSG A + LQ+R P D+AN+ QLLGLS+ AA+AAV+ N VL RAE+RRA +G+ V GG
Sbjct: 1 MIVIDLDSRLPYHIAAKHAASALRRNIYFEVCYGPTLRSAGARKHLINNTRGLVQFTSGRGLLLSGDANSPLQIRSPQDIANIAQLLGLSEQAALAAVSTNAQQVLLRAESRRAQHQGIMVVAEAGG 127
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: A0A250WQU3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WQU3_9CHLO) HSP 1 Score: 94.4 bits (233), Expect = 7.910e-18 Identity = 51/126 (40.48%), Postives = 76/126 (60.32%), Query Frame = 3
Query: 399 RHACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGF 776
+ AC ++ VD+I LDL Q+LP+ ++ ++DAA FE+ + +R RRHL N QAL GR LV+S GA ++++RGP D+ N+G L G+SQ A A++ N +VL R AR+ F
Sbjct: 121 QQACTSLEVDIISLDLGQRLPFKLRPQYIDAACKRDVRFEIQYSSGLRDQASRRHLFSNAQALSRLLRGRNLVISSGARNMMELRGPKDIINMGTLFGMSQEKAKRAISENCEAVLARGAARKLHF 246
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: A0A8J9ZMY5_BRALA (RPP30 protein n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A8J9ZMY5_BRALA) HSP 1 Score: 93.6 bits (231), Expect = 1.160e-17 Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEAR 764
AC+ + VD+I LD++QKLP+ ++ + A A G +FE+ + A+R RR+++ N L+TF G+ ++LS AE +++RGP DVANLG L G++Q A AV+ N SVL AE R
Sbjct: 99 ACKTLEVDIITLDMTQKLPFLLKLTPIKRAIARGAYFEIVYSPAIRDSTLRRYIISNATDLMTFCKGKNIILSSQAEKAIELRGPHDVANLGVLFGMNQVQAKDAVSINCRSVLLHAETR 218
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: A0A6P4XU10_BRABE (ribonuclease P protein subunit p30-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XU10_BRABE) HSP 1 Score: 91.7 bits (226), Expect = 7.220e-17 Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEAR 764
AC + VD+I LD++QKLP+ ++ + A A G FE+ A A+R RR+++ N L+TF G+ ++LS AE +++RGP DVANLG L G++QA A AV+ N +VL AE R
Sbjct: 119 ACHDLEVDIISLDMTQKLPFLLKLTPIKRAIARGIRFEIVYAPAIRDSTLRRYIISNATDLMTFCKGKNIILSSQAEKAIELRGPHDVANLGVLFGMNQAQAKDAVSVNCRAVLLHAETR 238
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: UPI0003F0B55A (ribonuclease P protein subunit p30-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B55A) HSP 1 Score: 90.5 bits (223), Expect = 1.770e-16 Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGFRG 782
AC + +D+IQ+++++K+P ++ H V AA G +FE+ A AVR R++++ N +L+ G+ +++S AE +++RGP DVANLG L GL++A + AV+ N SVL AE RR RG
Sbjct: 113 ACTQLDIDIIQVNMTEKMPMLIRIHPVKAALERGVYFEIVYAPAVRDSTARKNIISNALSLMFMCKGKNIIISSQAENAMEIRGPYDVANLGFLFGLNEAQSKDAVSMNCRSVLLHAETRRNTARG 238
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: UPI00074FF830 (ribonuclease P protein subunit p30 n=1 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FF830) HSP 1 Score: 89.0 bits (219), Expect = 3.810e-16 Identity = 50/124 (40.32%), Postives = 78/124 (62.90%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGF 776
AC + VDL+ +++++KLP+ +++ V+ A G +FE+ A++ RR+ + N +L+ G+ +VLS AE LQ+RGP DVANLG L GLS++ A AAV+ N +VL EAR+ F
Sbjct: 116 ACTTLDVDLVCINVTEKLPFYIKRPSVNVAMDRGIYFELVYVPAIKDSTMRRYTISNALSLMQICRGKNIVLSSAAEKPLQLRGPYDVANLGWLFGLSESNAKAAVSTNGRAVLLHGEARKTAF 239
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: UPI001C4BD0D5 (ribonuclease P protein subunit p30 isoform X2 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4BD0D5) HSP 1 Score: 88.2 bits (217), Expect = 5.460e-16 Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVL 746
AC + VDL+ +D+++KLP+ +++ ++ A G +FE+ A++ RR+ + N +L+ G+ ++LS GAE LQ+RGP DVANLG LLGLS+ A AAV+AN +VL
Sbjct: 116 ACTTLDVDLVCIDVTEKLPFYIKRPSINVAIDRGIYFELLYVPAIKDSTMRRYTVSNALSLMQICRGKNIILSSGAERPLQLRGPYDVANLGWLLGLSEGNAKAAVSANCRAVL 229
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: U4LFV2_PYROM (Similar to Probable ribonuclease P protein subunit 3 acc. no. P87120 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LFV2_PYROM) HSP 1 Score: 88.6 bits (218), Expect = 6.430e-16 Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALL-TFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARRAGFRGV 785
AC + DLI LD SQ+LP++++ V AA G FEVC + V RR+L+ +Q LL GGR +V+S A+ VL VRGP DV NL L G+ Q A A+ V+R+AE+RR G++GV
Sbjct: 98 ACSTLECDLISLDFSQRLPFALKHKTVGAALLRGISFEVCYSAGVADVQARRNLISGVQMLLRATRGGRGIVISSEAKNVLGVRGPEDVINLAVLWGMGQEQARDAICGRMRVVVRQAESRRRGYKGV 225
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Match: A0A8C5RF93_LATLA (Ribonuclease P/MRP subunit p30 n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5RF93_LATLA) HSP 1 Score: 87.8 bits (216), Expect = 1.340e-15 Identity = 49/121 (40.50%), Postives = 76/121 (62.81%), Query Frame = 3
Query: 405 ACQAVWVDLIQLDLSQKLPYSVQKHHVDAAAATGKFFEVCVAEAVRSPFGRRHLLQNMQALLTFGGGRRLVLSGGAEAVLQVRGPGDVANLGQLLGLSQAAAVAAVTANPASVLRRAEARR 767
AC + VDL+ +++++KLP+ +++ V+AA G +FE+ A++ RR+ + N LL G+ +VLS GAE +Q+RGP DVAN+G L GLS + AAV+ N +VL EAR+
Sbjct: 111 ACTTLDVDLVCVEVTEKLPFFIKRPSVNAAIERGVYFELLYVPAIKDSTMRRYTISNAYNLLQICRGKNIVLSSGAEKPIQLRGPYDVANIGWLFGLSGSNGKAAVSTNTRAVLLHGEARK 231 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5268.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig5268.2.1 >prot_P-wetherbeei_contig5268.2.1 ID=prot_P-wetherbeei_contig5268.2.1|Name=mRNA_P-wetherbeei_contig5268.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=367bp MGFKAHLGIGGKGGAFCSSTLAVYGFYNVSGSFLVALRSCRPLLNIIPQIback to top mRNA from alignment at P-wetherbeei_contig5268:389..1925+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig5268.2.1 ID=mRNA_P-wetherbeei_contig5268.2.1|Name=mRNA_P-wetherbeei_contig5268.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1537bp|location=Sequence derived from alignment at P-wetherbeei_contig5268:389..1925+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig5268:389..1925+ >mRNA_P-wetherbeei_contig5268.2.1 ID=mRNA_P-wetherbeei_contig5268.2.1|Name=mRNA_P-wetherbeei_contig5268.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1101bp|location=Sequence derived from alignment at P-wetherbeei_contig5268:389..1925+ (Phaeothamnion wetherbeei SAG_119_79)back to top |