mRNA_P-wetherbeei_contig52674.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52674.1.1
Unique NamemRNA_P-wetherbeei_contig52674.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: A0A5A4WIB6_MYCAV (Uncharacterized protein n=10 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A5A4WIB6_MYCAV)

HSP 1 Score: 60.1 bits (144), Expect = 1.260e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   10 MNYEDPGGFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            M+++   GFAEGRREERRRYVERRAARTAV G T   +KPW
Sbjct:    1 MDFDGGNGFAEGRREERRRYVERRAARTAVPGRTQNAKKPW 41
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: UPI000E3D0DC3 (hypothetical protein n=1 Tax=Mycobacterium marinum TaxID=1781 RepID=UPI000E3D0DC3)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-9
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   10 MNYEDPGGFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            M++     FAEGRREERRRYVERRAARTAV  H   T+KPW
Sbjct:    1 MDHHGGNSFAEGRREERRRYVERRAARTAVSAHAKNTKKPW 41
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: A0A1P8XL23_9MYCO (Uncharacterized protein n=3 Tax=Mycobacteriaceae TaxID=1762 RepID=A0A1P8XL23_9MYCO)

HSP 1 Score: 56.6 bits (135), Expect = 3.190e-9
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   28 GGFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            GGFAEGRREERRRYVERRAARTA      +TRKPW
Sbjct:   11 GGFAEGRREERRRYVERRAARTAAPADQQRTRKPW 45
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: UPI000BFEB181 (hypothetical protein n=1 Tax=Mycobacterium palauense TaxID=2034511 RepID=UPI000BFEB181)

HSP 1 Score: 55.5 bits (132), Expect = 8.670e-9
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   16 YEDPGGFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            Y+  GGFAEGRR+ERRRY+E RAARTAV G     +KPW
Sbjct:    5 YDGDGGFAEGRRQERRRYIEGRAARTAVPGRAKNVKKPW 43
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: A0A100WPP0_MYCFO (Uncharacterized protein n=2 Tax=Mycolicibacterium fortuitum TaxID=1766 RepID=A0A100WPP0_MYCFO)

HSP 1 Score: 53.9 bits (128), Expect = 3.270e-8
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   31 GFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            GFAEGRREERRRY+ERRAARTAV   T   +KPW
Sbjct:    7 GFAEGRREERRRYIERRAARTAVPDRTKNVKKPW 40
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BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Match: G4I646_MYCRH (Uncharacterized protein n=1 Tax=Mycolicibacterium rhodesiae JS60 TaxID=931627 RepID=G4I646_MYCRH)

HSP 1 Score: 53.5 bits (127), Expect = 4.630e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   31 GFAEGRREERRRYVERRAARTAVQGHTPKTRKPW 132
            GFAEGRR+ERRRYVERRAARTA+ G    TR+PW
Sbjct:    7 GFAEGRRQERRRYVERRAARTALVGRKKTTRRPW 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52674.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A4WIB6_MYCAV1.260e-1070.73Uncharacterized protein n=10 Tax=Mycobacteriaceae ... [more]
UPI000E3D0DC31.020e-968.29hypothetical protein n=1 Tax=Mycobacterium marinum... [more]
A0A1P8XL23_9MYCO3.190e-980.00Uncharacterized protein n=3 Tax=Mycobacteriaceae T... [more]
UPI000BFEB1818.670e-966.67hypothetical protein n=1 Tax=Mycobacterium palauen... [more]
A0A100WPP0_MYCFO3.270e-876.47Uncharacterized protein n=2 Tax=Mycolicibacterium ... [more]
G4I646_MYCRH4.630e-876.47Uncharacterized protein n=1 Tax=Mycolicibacterium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52674contigP-wetherbeei_contig52674:412..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.0911994-UTR-P-wetherbeei_contig52674:411..4201683186789.0911994-UTR-P-wetherbeei_contig52674:411..420Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52674 412..420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186789.1019342-CDS-P-wetherbeei_contig52674:420..5431683186789.1019342-CDS-P-wetherbeei_contig52674:420..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52674 421..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52674.1.1prot_P-wetherbeei_contig52674.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52674 421..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52674.1.1

>prot_P-wetherbeei_contig52674.1.1 ID=prot_P-wetherbeei_contig52674.1.1|Name=mRNA_P-wetherbeei_contig52674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MNYEDPGGFAEGRREERRRYVERRAARTAVQGHTPKTRKPW
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mRNA from alignment at P-wetherbeei_contig52674:412..543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52674.1.1 ID=mRNA_P-wetherbeei_contig52674.1.1|Name=mRNA_P-wetherbeei_contig52674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=132bp|location=Sequence derived from alignment at P-wetherbeei_contig52674:412..543+ (Phaeothamnion wetherbeei SAG_119_79)
GTGAGCGCCATGAACTATGAGGATCCCGGCGGCTTCGCCGAAGGTCGGCG
CGAGGAACGGCGACGCTACGTCGAACGTCGCGCGGCACGGACCGCGGTTC
AAGGACACACGCCGAAGACCAGGAAGCCTTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52674:412..543+

>mRNA_P-wetherbeei_contig52674.1.1 ID=mRNA_P-wetherbeei_contig52674.1.1|Name=mRNA_P-wetherbeei_contig52674.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig52674:412..543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACTATGAGGATCCCGGCGGCTTCGCCGAAGGTCGGCGCGAGGAACG
GCGACGCTACGTCGAACGTCGCGCGGCACGGACCGCGGTTCAAGGACACA
CGCCGAAGACCAGGAAGCCTTGG
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