mRNA_P-wetherbeei_contig52655.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52655.1.1
Unique NamemRNA_P-wetherbeei_contig52655.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A523JY78_9GAMM (NAD(P)-dependent oxidoreductase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523JY78_9GAMM)

HSP 1 Score: 221 bits (563), Expect = 2.310e-69
Identity = 116/178 (65.17%), Postives = 138/178 (77.53%), Query Frame = 1
Query:    1 GAALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            G A+E +VFG   VA +G+ +K+L+DMST  A  TR+MA RL   C M WLDAPISGGAPAA EG+MA+MVGG    FERARP+WDALAGR TLMGP+GAGQ TKM+NQ+LVS   AVLAEAC  AE+AG++A RIP AL GGRADSR LQE  PKM  SDFS+ G  A+M+KDL++I
Sbjct:   72 GKAVEAIVFGADGVATSGAPEKLLIDMSTSDAHHTRDMAARLRDACGMGWLDAPISGGAPAALEGRMAVMVGGAEAEFERARPVWDALAGRCTLMGPNGAGQTTKMINQILVSCTFAVLAEACGLAEKAGVEATRIPHALQGGRADSRLLQEFMPKMAKSDFSLQGTIAIMMKDLDMI 249          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A3D0ERJ2_9PROT (2-hydroxy-3-oxopropionate reductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3D0ERJ2_9PROT)

HSP 1 Score: 202 bits (515), Expect = 3.930e-62
Identity = 107/176 (60.80%), Postives = 136/176 (77.27%), Query Frame = 1
Query:    7 ALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            A+E +VFG++ +A +      L+DMSTC + +TR M+ RL  + ++ WLDAPISGGA AA EG+M IMVGG   VFERA+P+W  L GR TLMG SGAGQATKM+NQ+LVS+GL +LAEAC+ AE+ GI+  +IPQAL GGRADS QLQEMFPKM  S+ SIT R+ +MLKDL++I
Sbjct:   75 AVETIVFGEEGIAQSRGFAHTLIDMSTCESERTRSMSERLKLESSIDWLDAPISGGAIAAEEGRMTIMVGGAQPVFERAQPIWQVLGGRVTLMGESGAGQATKMINQLLVSSGLVMLAEACSLAEKIGINTDQIPQALFGGRADSSQLQEMFPKMAQSEHSITARSNIMLKDLKMI 250          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A7X6A504_9ACTN (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Kribbella shirazensis TaxID=1105143 RepID=A0A7X6A504_9ACTN)

HSP 1 Score: 175 bits (443), Expect = 4.510e-52
Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = 1
Query:    4 AALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            AA+E VVFG   VA  GSA KVLVDMST    ++RE+A +L AQ  M W+DAP+SGG  AA  G +A+M GG P  FER  P+   LAG  TLMGP GAGQ TKMVNQV+V    +V+AEA   A  AG+DA R+P+ALAGGRADS  L++  PKMV+ DFS  GR   +LKDL+L+
Sbjct:    5 AAVEAVVFGPCGVAEGGSAGKVLVDMSTIQPRRSRELAEQLRAQTGMGWVDAPVSGGPSAAAAGTLAVMAGGDPADFERVEPVLRHLAGGLTLMGPPGAGQTTKMVNQVIVGGCKSVIAEAIQLAMNAGLDARRLPEALAGGRADSVLLRQSIPKMVSGDFSPAGRLRTVLKDLDLV 181          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A8G2BNK9_9PROT (3-hydroxyisobutyrate dehydrogenase n=2 Tax=Thalassobaculum TaxID=526215 RepID=A0A8G2BNK9_9PROT)

HSP 1 Score: 176 bits (446), Expect = 1.090e-51
Identity = 94/176 (53.41%), Postives = 121/176 (68.75%), Query Frame = 1
Query:    7 ALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            A+E V+FG   VA A SADKVLVD S+    + +E A RL A+  M W+DAP+SGG P A  G + +M GG    F R  P+   LAGR TLMG +GAGQ+TK++NQ++V  GLA++AE C FAE AGID A++PQALAGGRADS  LQ+  P+M A D  + GR A+M+KDL  +
Sbjct:   74 AVETVIFGTDGVAEAASADKVLVDFSSMKPDKAKEFAARLRAETGMGWIDAPVSGGVPGATNGTLTVMAGGSAADFARVEPVVAHLAGRFTLMGENGAGQSTKLINQMIVGAGLALMAECCQFAEDAGIDPAKLPQALAGGRADSPILQQFLPRMAARDRDVQGRVAIMVKDLNTV 249          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A6L7XLR3_9PROT (NAD(P)-dependent oxidoreductase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6L7XLR3_9PROT)

HSP 1 Score: 170 bits (430), Expect = 2.770e-49
Identity = 94/176 (53.41%), Postives = 118/176 (67.05%), Query Frame = 1
Query:    7 ALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            A+E VVFG++ +AA G+  K+LVDMS+      R MA RL  +  M W+DAP+SGG   A  G + +M GG    FERAR +   LA R TLMGP GAGQ TK++NQ +V  G AVLAEA A A RAGIDA R+P+ALAGGRADS  LQ+ FPKMVA D ++      +LKDL+ +
Sbjct:   74 AVEAVVFGEEGIAAGGAGGKLLVDMSSIRPDACRNMAARLERETGMRWMDAPVSGGVIGAETGNLTVMAGGNEADFERAREVVAVLARRFTLMGPIGAGQTTKLINQTIVGCGFAVLAEAAALAVRAGIDAGRLPEALAGGRADSLLLQQFFPKMVAGDMTVESHIRTILKDLDTV 249          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: UPI001674A9EE (NAD(P)-dependent oxidoreductase n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI001674A9EE)

HSP 1 Score: 169 bits (428), Expect = 5.250e-49
Identity = 93/174 (53.45%), Postives = 115/174 (66.09%), Query Frame = 1
Query:    4 AALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDL 525
            AA+E VVFG   +A+      VLVD S+         A RL A+  M W+DAP+SGG P A  G +A+M GG P  FER  P+   LAGR TLMGP+GAGQ TK++NQ++V  G A++AEAC  AE AGID ARIPQALAGGRADS  LQ+  P+M A D  +  R A+M+KDL
Sbjct:   73 AAVEAVVFGPDGIASGARRGGVLVDFSSMRPDAAAGFAARLRAETGMGWIDAPVSGGVPGASNGTLAVMAGGDPTDFERVAPVVAHLAGRFTLMGPNGAGQTTKLINQMIVGCGFAIVAEACQLAEDAGIDPARIPQALAGGRADSPVLQQYLPRMAARDREVQARIAIMIKDL 246          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: UPI0015926F65 (NAD(P)-dependent oxidoreductase n=1 Tax=Martelella sp. HB161492 TaxID=2720726 RepID=UPI0015926F65)

HSP 1 Score: 169 bits (428), Expect = 5.390e-49
Identity = 94/173 (54.34%), Postives = 117/173 (67.63%), Query Frame = 1
Query:   10 LEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLE 528
            +E VVFGD  VA AG+A+K+L+DMS+     T +MA RL+ Q  MAWLD P+SGGAP A  G++ +M GG+   FERARP+ DAL    TLMG SGAGQ TK++NQ+  +     +AEA   AE  G+DA  IP ALAGGRADSR +QE   K  A DF+ TGR   MLKDL+
Sbjct:   72 VEAVVFGDDGVAEAGNAEKMLIDMSSIDPVATAKMAKRLSDQTGMAWLDCPLSGGAPGALAGRLTVMAGGEQQDFERARPVMDALCANYTLMGGSGAGQTTKLINQLFCAVLFQAVAEAVKLAEAGGVDARAIPAALAGGRADSRIMQEFMAKFAARDFTPTGRIDNMLKDLD 244          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A6J5GU37_9BURK (2-hydroxy-3-oxopropionate reductase n=2 Tax=Paraburkholderia TaxID=1822464 RepID=A0A6J5GU37_9BURK)

HSP 1 Score: 168 bits (426), Expect = 1.020e-48
Identity = 95/177 (53.67%), Postives = 119/177 (67.23%), Query Frame = 1
Query:    4 AALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            A +E+ VFG   +AA GS DK+L+DMS+  A +T EMA RL  Q  M W+DAP+SGGAPAA +G + +MVGG     + A PL   LA R T  G +GAGQ  K++NQVL + G   +AEA  FAE+ G+DA++IP ALAGGRADSR LQE   KM   DF+ TGR   MLKDLE +
Sbjct:   68 AIVEKAVFGPNGIAAEGSTDKLLIDMSSIDAGRTSEMAARLREQSGMGWVDAPLSGGAPAALQGTLTLMVGGTEQDVKHAEPLLAQLAARFTRFGEAGAGQTVKLINQVLCAAGFMAVAEAVRFAEQHGVDASKIPGALAGGRADSRILQEFMGKMAVRDFTPTGRIDNMLKDLETV 244          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A1Y1RVE4_9SPIO (6-phosphogluconate dehydrogenase n=1 Tax=Marispirochaeta aestuarii TaxID=1963862 RepID=A0A1Y1RVE4_9SPIO)

HSP 1 Score: 167 bits (424), Expect = 2.040e-48
Identity = 96/177 (54.24%), Postives = 118/177 (66.67%), Query Frame = 1
Query:    4 AALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLELI 534
            A +   VFG   +A + S DK+L+DMS+   A TREMA  L A   MAW+DAP+SGGAP A+ G++ +M GG  +   RAR + D+L    + MGPSGAGQ TK+VNQVL + G   +AEA   AE  G+DAARIP ALAGGRADS  LQE  PKM A D+S TGR   MLKDLE +
Sbjct:   72 AIVRSAVFGPGGIAESASGDKMLIDMSSIDPAATREMARELEATSGMAWVDAPLSGGAPKAKLGQLTVMAGGSAENVGRARAVMDSLCANYSHMGPSGAGQTTKLVNQVLCALGFQAVAEAVRIAEAGGVDAARIPAALAGGRADSSILQEFGPKMAARDYSPTGRIDNMLKDLEAV 248          
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Match: A0A1M2ZDC8_9SPHN (6-phosphogluconate dehydrogenase n=1 Tax=Sphingomonas sp. 66-10 TaxID=1895848 RepID=A0A1M2ZDC8_9SPHN)

HSP 1 Score: 167 bits (424), Expect = 2.090e-48
Identity = 98/175 (56.00%), Postives = 117/175 (66.86%), Query Frame = 1
Query:    4 AALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAWLDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGAGQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQLQEMFPKMVASDFSITGRAALMLKDLE 528
            A +EQ VFG   VAAAGS   +LVDMS+  A +T  MA RL   C M W+DAP+SGGAPAA EG++ +M+GG      RARPL D LA  AT +G  GAGQ  K++NQ+L ++    +AEA  FAE  G+DA RIP ALAGGRADSR +QE   KM   DFS TGR   MLKDLE
Sbjct:   68 AIVEQAVFGADGVAAAGSDAALLVDMSSIDAGRTASMAARLRDACGMGWVDAPLSGGAPAALEGRLTLMLGGSDADVARARPLLDRLAANATHLGGPGAGQTVKLINQLLCASTFLSVAEAVRFAEAHGVDATRIPAALAGGRADSRIMQEFMAKMARRDFSPTGRIDNMLKDLE 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52655.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523JY78_9GAMM2.310e-6965.17NAD(P)-dependent oxidoreductase n=1 Tax=Gammaprote... [more]
A0A3D0ERJ2_9PROT3.930e-6260.802-hydroxy-3-oxopropionate reductase n=1 Tax=Betapr... [more]
A0A7X6A504_9ACTN4.510e-5257.063-hydroxyisobutyrate dehydrogenase n=2 Tax=Kribbel... [more]
A0A8G2BNK9_9PROT1.090e-5153.413-hydroxyisobutyrate dehydrogenase n=2 Tax=Thalass... [more]
A0A6L7XLR3_9PROT2.770e-4953.41NAD(P)-dependent oxidoreductase n=1 Tax=Rhodospiri... [more]
UPI001674A9EE5.250e-4953.45NAD(P)-dependent oxidoreductase n=1 Tax=Thalassoba... [more]
UPI0015926F655.390e-4954.34NAD(P)-dependent oxidoreductase n=1 Tax=Martelella... [more]
A0A6J5GU37_9BURK1.020e-4853.672-hydroxy-3-oxopropionate reductase n=2 Tax=Parabu... [more]
A0A1Y1RVE4_9SPIO2.040e-4854.246-phosphogluconate dehydrogenase n=1 Tax=Marispiro... [more]
A0A1M2ZDC8_9SPHN2.090e-4856.006-phosphogluconate dehydrogenase n=1 Tax=Sphingomo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52655contigP-wetherbeei_contig52655:4..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog702113.PP1Y_AT5321
PFAMsNAD_binding_11,NAD_binding_2
Model size534
Max annot lvl204457|Sphingomonadales
KEGG rclassRC00099
KEGG koko:K00042
KEGG ReactionR01745,R01747
KEGG Pathwayko00630,ko01100,map00630,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.69e-49
EggNOG OGsCOG2084@1|root,COG2084@2|Bacteria,1P0X0@1224|Proteobacteria,2U255@28211|Alphaproteobacteria,2K2X3@204457|Sphingomonadales
EC1.1.1.60
DescriptionNAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Cds size534
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.8049455-CDS-P-wetherbeei_contig52655:3..5371683186788.8049455-CDS-P-wetherbeei_contig52655:3..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52655 4..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52655.1.1prot_P-wetherbeei_contig52655.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52655 4..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52655.1.1

>prot_P-wetherbeei_contig52655.1.1 ID=prot_P-wetherbeei_contig52655.1.1|Name=mRNA_P-wetherbeei_contig52655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
GAALEQVVFGDQCVAAAGSADKVLVDMSTCAAAQTREMATRLAAQCAMAW
LDAPISGGAPAAREGKMAIMVGGQPDVFERARPLWDALAGRATLMGPSGA
GQATKMVNQVLVSTGLAVLAEACAFAERAGIDAARIPQALAGGRADSRQL
QEMFPKMVASDFSITGRAALMLKDLELI
back to top

mRNA from alignment at P-wetherbeei_contig52655:4..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52655.1.1 ID=mRNA_P-wetherbeei_contig52655.1.1|Name=mRNA_P-wetherbeei_contig52655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig52655:4..537- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGCGCTGGAGCAGGTCGTCTTCGGCGACCAGTGCGTAGCAGCGGC CGGAAGTGCCGACAAGGTGCTGGTCGATATGTCTACTTGCGCCGCGGCGC AAACGCGGGAGATGGCGACTCGTCTCGCGGCGCAATGCGCAATGGCATGG CTCGATGCGCCGATTTCCGGCGGAGCGCCCGCCGCGCGCGAAGGCAAAAT GGCAATCATGGTCGGCGGACAGCCGGACGTCTTCGAGCGCGCACGACCGC TGTGGGATGCGCTCGCCGGCCGCGCAACGCTGATGGGGCCGAGCGGCGCC GGACAGGCCACCAAGATGGTCAATCAGGTATTGGTGTCCACCGGGCTGGC CGTGCTGGCCGAAGCCTGCGCCTTTGCCGAACGCGCCGGTATCGATGCGG CAAGAATTCCGCAGGCGCTGGCCGGTGGACGAGCCGATTCCAGGCAATTG CAGGAAATGTTCCCGAAGATGGTGGCATCGGATTTTTCCATCACCGGGCG TGCCGCGCTGATGCTCAAGGATCTGGAACTCATT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52655:4..537-

>mRNA_P-wetherbeei_contig52655.1.1 ID=mRNA_P-wetherbeei_contig52655.1.1|Name=mRNA_P-wetherbeei_contig52655.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig52655:4..537- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGCGCTGGAGCAGGTCGTCTTCGGCGACCAGTGCGTAGCAGCGGC
CGGAAGTGCCGACAAGGTGCTGGTCGATATGTCTACTTGCGCCGCGGCGC
AAACGCGGGAGATGGCGACTCGTCTCGCGGCGCAATGCGCAATGGCATGG
CTCGATGCGCCGATTTCCGGCGGAGCGCCCGCCGCGCGCGAAGGCAAAAT
GGCAATCATGGTCGGCGGACAGCCGGACGTCTTCGAGCGCGCACGACCGC
TGTGGGATGCGCTCGCCGGCCGCGCAACGCTGATGGGGCCGAGCGGCGCC
GGACAGGCCACCAAGATGGTCAATCAGGTATTGGTGTCCACCGGGCTGGC
CGTGCTGGCCGAAGCCTGCGCCTTTGCCGAACGCGCCGGTATCGATGCGG
CAAGAATTCCGCAGGCGCTGGCCGGTGGACGAGCCGATTCCAGGCAATTG
CAGGAAATGTTCCCGAAGATGGTGGCATCGGATTTTTCCATCACCGGGCG
TGCCGCGCTGATGCTCAAGGATCTGGAACTCATT
back to top