mRNA_P-wetherbeei_contig5265.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5265.2.1
Unique NamemRNA_P-wetherbeei_contig5265.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A8H4R3V9_9AGAR (Uncharacterized protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4R3V9_9AGAR)

HSP 1 Score: 107 bits (268), Expect = 3.990e-25
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYG--ATFAPVMSVDAMRFMLA 300
            P++   AL GPE  +W  AM  E+   ++  TWR+   +P GR V+GCRWVFTKKR   G ++++KARLV QGF Q+PGVDY    TFAPVM  + +R MLA
Sbjct:  894 PRTFEEALAGPEATQWKEAMDEEMGTLEKMGTWRKGM-LPVGRKVVGCRWVFTKKRDEYGRVVKFKARLVVQGFSQKPGVDYSEDGTFAPVMRFETLRTMLA 994
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A5S6QFS2_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QFS2_TRIMR)

HSP 1 Score: 102 bits (254), Expect = 1.110e-24
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   22 LEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            +  PE +EW+AA+  EL+AH RN++W   S++P G+  I  RWVF  K  ADGT+ + KARLVA+G+LQ+ G+DY  TFAP++S  ++R +LA
Sbjct:    1 MHRPETSEWLAAVDEELAAHYRNRSWE-ISNLPKGKKAIKSRWVFKTKCKADGTVEKRKARLVAKGYLQKAGIDYEETFAPILSYSSLRLLLA 92
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A409YPA0_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409YPA0_9AGAR)

HSP 1 Score: 102 bits (255), Expect = 2.640e-24
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            P+S   A+ GP G+EW  AM  E++ H  N TWR   ++P G   IG RWVF  K   DGT+ R+KAR+VAQGF QRPGVD+  TFAP     A+R +LA
Sbjct:  188 PKSFHEAINGPHGSEWYTAMAEEMNNHLANGTWR-VVYLPAGEKAIGSRWVFKVKHMPDGTLDRFKARVVAQGFSQRPGVDFDETFAPTARWTAVRTILA 286
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A075B3L7_ROZAC (Integrase, catalytic core domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B3L7_ROZAC)

HSP 1 Score: 105 bits (261), Expect = 3.460e-24
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            P++V  AL G E  EW  AM+ E  + + NKTW+    +P  R  +GCRWVF KK  ++G + RYKARLVAQGF QRPG+D   T+APV  + ++R ++A
Sbjct:  373 PRNVKEALSGAEANEWKQAMETEYKSLEENKTWKLCE-LPASRTAVGCRWVFAKKFDSEGKLQRYKARLVAQGFSQRPGIDVEQTYAPVTRIQSVRILIA 471
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A0J7KF97_LASNI (Putative retrotransposon (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KF97_LASNI)

HSP 1 Score: 105 bits (261), Expect = 3.480e-24
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            P++++ A+ GPEGA+W  A++ EL AH+RNKTW     V  G   I  +WVF   R  DG++ R+KARL A+GF QR GVDY  TF+PV+  D++R +LA
Sbjct:  597 PEAISEAVSGPEGAKWKQAIEYELEAHERNKTWTLMPRVS-GEKTIDSKWVFKALRNEDGSVWRFKARLCARGFQQREGVDYIETFSPVVRYDSLRVLLA 695
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A6G0WQ29_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ29_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.450e-24
Identity = 52/100 (52.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            P ++  A   PE AEWI A   E ++   + TW     +P  R  IGCRW+FTKK AADGT+ RYKARLVAQGF Q  GVDY   FAPV+   ++RF+LA
Sbjct:  183 PSTIRQAHASPEKAEWIKATDAEYNSLMHHNTWTLCE-LPPDRKPIGCRWIFTKKYAADGTLSRYKARLVAQGFTQVAGVDYTEVFAPVIRTSSIRFLLA 281
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 102 bits (254), Expect = 1.070e-23
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFM 294
            P++   A+EGPE   W AAM+ EL++ +  K W   + +P G+  IG +WVF  K  ADGT+ RYKARLVAQGF Q+PGVDY  T++PV+S+ A+R +
Sbjct:   26 PKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWE-FTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLL 122
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: Q572I3_PHYIN (Putative polyprotein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=Q572I3_PHYIN)

HSP 1 Score: 103 bits (257), Expect = 1.220e-23
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNV--IGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA 300
            P + A A+   E  EW  AMQ EL++H RN TW   + VP G     IGCRWVFTKKR  +G ++RYKARLVAQGF Q+ G+D+  T++PV +++++R +LA
Sbjct:  827 PNTYAEAIASNEAGEWRRAMQSELNSHSRNGTW---TLVPRGTTTRSIGCRWVFTKKRDENGRVIRYKARLVAQGFKQKFGIDFFETYSPVANMNSIRAVLA 925
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A0B7FGS9_THACB (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=A0A0B7FGS9_THACB)

HSP 1 Score: 103 bits (256), Expect = 1.600e-23
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:   19 ALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFM 294
            A+  PE ++WIAAM+ E S   R  T+  +   P G N+IGCRWVF KKR   G + RYKARLVA+G+ Q+PG D+  TFAPV+ +D++R +
Sbjct:  533 AMTSPESSQWIAAMEEEYSQLMRMGTFTPTPRPPTGTNIIGCRWVFAKKRDEHGNVTRYKARLVAKGYTQKPGQDFDDTFAPVLRLDSLRIL 624
[Close]
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Match: A0A4Q2D844_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D844_9AGAR)

HSP 1 Score: 101 bits (251), Expect = 2.220e-23
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRWVFTKKRAADGTILRYKARLVAQGFLQRPGVDYG--ATFAPVMSVDAMRFMLA 300
            P+++  ALEGPE   W+ A+  EL   ++  TW     +P GR  +GC+WVFTKKR   G I+ YKARLVAQGF Q+PG+D+    T+APVM ++ +R  LA
Sbjct:  170 PRTIQEALEGPEKEHWLKAILEELGNLEKMGTWDLED-LPPGREAVGCKWVFTKKRDEKGNIIHYKARLVAQGFSQKPGMDFDLDGTYAPVMRLEMLRACLA 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5265.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H4R3V9_9AGAR3.990e-2550.98Uncharacterized protein n=1 Tax=Agrocybe pediades ... [more]
A0A5S6QFS2_TRIMR1.110e-2449.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A409YPA0_9AGAR2.640e-2451.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A075B3L7_ROZAC3.460e-2448.00Integrase, catalytic core domain-containing protei... [more]
A0A0J7KF97_LASNI3.480e-2449.00Putative retrotransposon (Fragment) n=1 Tax=Lasius... [more]
A0A6G0WQ29_9STRA4.450e-2452.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9WI29_LYGHE1.070e-2350.00Retrovirus-related Pol polyprotein from transposon... [more]
Q572I3_PHYIN1.220e-2350.00Putative polyprotein n=1 Tax=Phytophthora infestan... [more]
A0A0B7FGS9_THACB1.600e-2350.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Q2D844_9AGAR2.220e-2348.04Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5265contigP-wetherbeei_contig5265:1338..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65672.G4T9D2
PFAMsRVT_2,gag_pre-integrs,rve
Model size300
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.8e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,227R3@155619|Agaricomycetes,3H58M@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size300
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.6841836-CDS-P-wetherbeei_contig5265:1337..16371683186788.6841836-CDS-P-wetherbeei_contig5265:1337..1637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5265 1338..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5265.2.1prot_P-wetherbeei_contig5265.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5265 1338..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5265.2.1

>prot_P-wetherbeei_contig5265.2.1 ID=prot_P-wetherbeei_contig5265.2.1|Name=mRNA_P-wetherbeei_contig5265.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
PQSVAGALEGPEGAEWIAAMQVELSAHDRNKTWRRSSHVPHGRNVIGCRW
VFTKKRAADGTILRYKARLVAQGFLQRPGVDYGATFAPVMSVDAMRFMLA
back to top

mRNA from alignment at P-wetherbeei_contig5265:1338..1637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5265.2.1 ID=mRNA_P-wetherbeei_contig5265.2.1|Name=mRNA_P-wetherbeei_contig5265.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig5265:1338..1637+ (Phaeothamnion wetherbeei SAG_119_79)
CCACAGTCAGTAGCGGGGGCGCTGGAGGGACCGGAGGGAGCGGAGTGGAT
TGCGGCGATGCAGGTAGAGCTTTCTGCACATGACCGCAACAAGACATGGC
GCCGCTCGTCGCATGTCCCTCATGGTCGCAACGTCATCGGCTGCCGGTGG
GTGTTTACGAAAAAGCGGGCGGCGGACGGGACAATTCTGCGCTACAAAGC
CCGGCTTGTGGCGCAGGGCTTCTTGCAGCGGCCGGGAGTGGACTACGGCG
CAACGTTTGCTCCGGTCATGTCGGTCGACGCGATGCGGTTCATGTTGGCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5265:1338..1637+

>mRNA_P-wetherbeei_contig5265.2.1 ID=mRNA_P-wetherbeei_contig5265.2.1|Name=mRNA_P-wetherbeei_contig5265.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig5265:1338..1637+ (Phaeothamnion wetherbeei SAG_119_79)
CCACAGTCAGTAGCGGGGGCGCTGGAGGGACCGGAGGGAGCGGAGTGGAT
TGCGGCGATGCAGGTAGAGCTTTCTGCACATGACCGCAACAAGACATGGC
GCCGCTCGTCGCATGTCCCTCATGGTCGCAACGTCATCGGCTGCCGGTGG
GTGTTTACGAAAAAGCGGGCGGCGGACGGGACAATTCTGCGCTACAAAGC
CCGGCTTGTGGCGCAGGGCTTCTTGCAGCGGCCGGGAGTGGACTACGGCG
CAACGTTTGCTCCGGTCATGTCGGTCGACGCGATGCGGTTCATGTTGGCA
back to top