mRNA_P-wetherbeei_contig52616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52616.1.1
Unique NamemRNA_P-wetherbeei_contig52616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: UPI001FACFE28 (GspE/PulE family protein n=1 Tax=Clostridium thermarum TaxID=1716543 RepID=UPI001FACFE28)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 TSPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            ++PI+  VD +I+EAI +  SDIH+E FE  + +RYRIDGEL
Sbjct:  181 SAPIVKLVDSVIREAIKLNTSDIHIEPFEKQVKIRYRIDGEL 222
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A660PPU8_9BACT (Type IV-A pilus assembly ATPase PilB n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A660PPU8_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 PIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            P++  VD +I +AI  GASDIH+ET+E  I VRYRIDGEL
Sbjct:  181 PLVKLVDSIIADAIRGGASDIHIETYEKKIRVRYRIDGEL 220
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A7V6LLG1_9MOLU (Type II/IV secretion system protein n=1 Tax=Acholeplasmataceae bacterium TaxID=1898209 RepID=A0A7V6LLG1_9MOLU)

HSP 1 Score: 53.9 bits (128), Expect = 3.110e-7
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 TSPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            T+PI+  VD +IKEAIS+GASDIH E  E  + VR RIDG L
Sbjct:  175 TAPIVQLVDAIIKEAISIGASDIHFEPMERNVRVRMRIDGIL 216
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A524QV94_9BACT (Type IV-A pilus assembly ATPase PilB n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A524QV94_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 4.260e-7
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    7 PIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            P++  VD +I EAI  GASDIH+ET+E  I VRYR+DG L
Sbjct:  183 PLVKLVDSIISEAIRKGASDIHIETYEKKIRVRYRVDGSL 222
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A7G8EIP3_9CYAN (Type II secretory pathway/ ATPase PulE/Tfp pilus assembly pathway/ ATPase PilB n=4 Tax=unclassified Cyanobium TaxID=2627006 RepID=A0A7G8EIP3_9CYAN)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 21/41 (51.22%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 SPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            SPI++ VD+++ EA+S+GASDIH+E ++  +++R+RIDG L
Sbjct:  184 SPIVSLVDRILIEALSIGASDIHVEPYDQTLEIRFRIDGVL 224
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: UPI001F2F6EE0 (Flp pilus assembly complex ATPase component TadA n=1 Tax=Clostridium hydrogenum TaxID=2855764 RepID=UPI001F2F6EE0)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 SPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            +PI+  VD +IKEAI + +SDIH+E FE  I +RYRIDGEL
Sbjct:  177 APIVKLVDFIIKEAIRLESSDIHIEPFEKYIKIRYRIDGEL 217
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A7X9FE66_9BACT (Flp pilus assembly complex ATPase component TadA (Fragment) n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7X9FE66_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.820e-7
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    7 PIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            P++  VD +IK+A+ +GASDIH+E +E  I VRYR+DG L
Sbjct:  182 PLVRLVDSIIKDAVRIGASDIHIEMYERRIRVRYRVDGSL 221
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BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A3C1KSW1_9GAMM (Type II secretion system protein GspE n=7 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KSW1_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 7.960e-7
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 SPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            +P+I  V++LI  A+ +GASDIH+E FE G+ +RYR+DG L
Sbjct:  173 APVIRLVNQLIHRAVDMGASDIHIEPFEDGLQLRYRVDGVL 213
[Close]
BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A381H5Y4_CITKO (T2SS protein E n=1 Tax=Citrobacter koseri TaxID=545 RepID=A0A381H5Y4_CITKO)

HSP 1 Score: 49.3 bits (116), Expect = 9.150e-7
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    4 SPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            SP+I  ++ ++ EA+  GASDIH+ETFE  + +R+R+DG L
Sbjct:    4 SPVIRLINAILGEAVKDGASDIHIETFERTLSIRFRVDGVL 44
[Close]
BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Match: A0A095VUJ6_9GAMM (General secretion pathway protein E n=2 Tax=Pseudohaliea TaxID=1341120 RepID=A0A095VUJ6_9GAMM)

HSP 1 Score: 52.4 bits (124), Expect = 1.090e-6
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 SPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL 126
            +P+I  VD+L+  A+ +GASDIH+E FE G+ +RYR+DG L
Sbjct:  176 APVIRLVDQLMHRALDLGASDIHVEPFEDGLHLRYRVDGVL 216
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FACFE283.110e-754.76GspE/PulE family protein n=1 Tax=Clostridium therm... [more]
A0A660PPU8_9BACT3.110e-762.50Type IV-A pilus assembly ATPase PilB n=1 Tax=candi... [more]
A0A7V6LLG1_9MOLU3.110e-761.90Type II/IV secretion system protein n=1 Tax=Achole... [more]
A0A524QV94_9BACT4.260e-760.00Type IV-A pilus assembly ATPase PilB n=1 Tax=candi... [more]
A0A7G8EIP3_9CYAN5.820e-751.22Type II secretory pathway/ ATPase PulE/Tfp pilus a... [more]
UPI001F2F6EE05.820e-760.98Flp pilus assembly complex ATPase component TadA n... [more]
A0A7X9FE66_9BACT5.820e-755.00Flp pilus assembly complex ATPase component TadA (... [more]
A0A3C1KSW1_9GAMM7.960e-753.66Type II secretion system protein GspE n=7 Tax=Hali... [more]
A0A381H5Y4_CITKO9.150e-748.78T2SS protein E n=1 Tax=Citrobacter koseri TaxID=54... [more]
A0A095VUJ6_9GAMM1.090e-653.66General secretion pathway protein E n=2 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52616contigP-wetherbeei_contig52616:194..319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121937.AUHJ01000006_gene2509
Preferred namexpsE
PFAMsT2SSE,T2SSE_N
Model size126
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02454
KEGG TC3.A.15
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0042802
Exons1
Evalue1.31e-07
EggNOG OGsCOG2804@1|root,COG2804@2|Bacteria,1MU7V@1224|Proteobacteria,1RMBS@1236|Gammaproteobacteria,464D8@72275|Alteromonadaceae
DescriptionCOG2804 Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Cds size126
COG categoryNU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186788.2827272-CDS-P-wetherbeei_contig52616:193..3191683186788.2827272-CDS-P-wetherbeei_contig52616:193..319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52616 194..319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52616.1.1prot_P-wetherbeei_contig52616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52616 194..319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52616.1.1

>prot_P-wetherbeei_contig52616.1.1 ID=prot_P-wetherbeei_contig52616.1.1|Name=mRNA_P-wetherbeei_contig52616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=42bp
TSPIIATVDKLIKEAISVGASDIHLETFEPGIDVRYRIDGEL
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mRNA from alignment at P-wetherbeei_contig52616:194..319-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52616.1.1 ID=mRNA_P-wetherbeei_contig52616.1.1|Name=mRNA_P-wetherbeei_contig52616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig52616:194..319- (Phaeothamnion wetherbeei SAG_119_79)
ACCAGCCCCATCATCGCCACCGTCGATAAGTTGATCAAAGAAGCCATCTC
GGTGGGCGCCAGCGATATCCATCTCGAGACCTTCGAGCCCGGAATCGACG
TGCGCTATCGGATCGACGGCGAGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52616:194..319-

>mRNA_P-wetherbeei_contig52616.1.1 ID=mRNA_P-wetherbeei_contig52616.1.1|Name=mRNA_P-wetherbeei_contig52616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=126bp|location=Sequence derived from alignment at P-wetherbeei_contig52616:194..319- (Phaeothamnion wetherbeei SAG_119_79)
ACCAGCCCCATCATCGCCACCGTCGATAAGTTGATCAAAGAAGCCATCTC
GGTGGGCGCCAGCGATATCCATCTCGAGACCTTCGAGCCCGGAATCGACG
TGCGCTATCGGATCGACGGCGAGCTT
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