mRNA_P-wetherbeei_contig52588.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52588.1.1
Unique NamemRNA_P-wetherbeei_contig52588.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A7V7C201_9HYPH (Flagellin n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7V7C201_9HYPH)

HSP 1 Score: 155 bits (392), Expect = 1.560e-44
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            MASILTNVSAMTAL+SL  TN S+EETQ RISTGYRV  A DNAAYWSIATTMRSDN AL TV+DALGLGA+ ID+AYTA N+AI+V   IK+KLVAAR+PGV+R K+QAE
Sbjct:    1 MASILTNVSAMTALKSLQATNRSLEETQSRISTGYRVAGASDNAAYWSIATTMRSDNKALLTVQDALGLGASKIDIAYTATNSAIDVVDEIKSKLVAAREPGVDRAKVQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A2S5PCS7_HYPSQ (Flagellin n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5PCS7_HYPSQ)

HSP 1 Score: 154 bits (388), Expect = 6.520e-44
Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M SI TN +AMTALQSLN TN  M +TQ RISTG+RV TAEDNA+YWSIATTMRSD+ AL+TVKDALGLG+AT+DVAYTAIN+AI+VT  IK+KLVAAR+PG++R K+Q E
Sbjct:    1 MNSIKTNFAAMTALQSLNSTNKEMLKTQSRISTGFRVATAEDNASYWSIATTMRSDSKALSTVKDALGLGSATVDVAYTAINSAIDVTSEIKSKLVAAREPGIDRAKVQGE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A6N6SZW1_9HYPH (Flagellin n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SZW1_9HYPH)

HSP 1 Score: 154 bits (388), Expect = 7.010e-44
Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M+SI TNV+AMTALQ+L +TN S+ ETQ RISTGYRV TA DNAAYWSIATTMRSDN+AL+TV+DALGLGAAT+DVAYT I +AI+V   IK KLVAARQPG++R K+Q+E
Sbjct:    3 MSSINTNVAAMTALQTLTQTNKSLTETQNRISTGYRVATAADNAAYWSIATTMRSDNAALSTVQDALGLGAATVDVAYTGIQSAIDVVDEIKTKLVAARQPGIDRAKVQSE 113
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A2E0IK71_9HYPH (Flagellin n=2 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IK71_9HYPH)

HSP 1 Score: 152 bits (384), Expect = 2.290e-43
Identity = 81/111 (72.97%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M+SI+TN +AMTAL++L +TN  +EETQ RISTGY+V  A DNAAYWSIATTMRSDN AL+TV+DALGLGAA +DVAYTA+N+AIEV   IK+KLVAAR+PGV+RTKIQ+E
Sbjct:    1 MSSIMTNAAAMTALKTLQQTNSKIEETQSRISTGYQVAEASDNAAYWSIATTMRSDNKALSTVQDALGLGAAKVDVAYTALNSAIEVIDEIKSKLVAAREPGVDRTKIQSE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A3B0S0N0_9ZZZZ (Flagellin protein FlaA n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0S0N0_9ZZZZ)

HSP 1 Score: 152 bits (383), Expect = 3.490e-43
Identity = 81/111 (72.97%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            MASI TNVSAMTALQ+LN+TN ++E TQ RISTG+RV TA+DNAAYWSIATTM+SDN AL+TV DALGLGAAT+DVAYTA+ ++++V   IK+KLVAAR+PGV+R+ IQAE
Sbjct:    1 MASINTNVSAMTALQTLNQTNKNLETTQSRISTGFRVATAKDNAAYWSIATTMKSDNKALSTVTDALGLGAATVDVAYTALESSMDVVSEIKSKLVAAREPGVDRSAIQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: UPI00056EED47 (flagellin n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00056EED47)

HSP 1 Score: 151 bits (382), Expect = 4.690e-43
Identity = 84/111 (75.68%), Postives = 94/111 (84.68%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M SI TN SAMTALQSLN+TN ++ +TQ RISTGYRV TA DNAAYWSIATTMRSDN AL+ VKDALGLGAAT+DVAYTA++ AIEV   IK KLVAAR PGV+R+ IQAE
Sbjct:    1 MFSIRTNASAMTALQSLNQTNKALAQTQNRISTGYRVATAADNAAYWSIATTMRSDNKALSAVKDALGLGAATVDVAYTAMDKAIEVVGEIKAKLVAARSPGVDRSAIQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: UPI00056FDCC4 (flagellin n=1 Tax=Thermopetrobacter sp. TC1 TaxID=1495045 RepID=UPI00056FDCC4)

HSP 1 Score: 151 bits (381), Expect = 6.780e-43
Identity = 82/111 (73.87%), Postives = 95/111 (85.59%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M+SI TN +AMTALQSL +TN ++E+TQ  ISTGYRVGTA DNAAYWSIATTMRSDN AL+ VKDALGLGAAT+DVAYTA+  +IEV   IK KLVAAR+PGV+R+ IQAE
Sbjct:    1 MSSIRTNAAAMTALQSLTQTNKALEKTQNHISTGYRVGTAADNAAYWSIATTMRSDNKALSAVKDALGLGAATVDVAYTALEKSIEVVGEIKAKLVAAREPGVDRSAIQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A3A8AKL8_9HYPH (Flagellin n=2 Tax=Phyllobacteriaceae TaxID=69277 RepID=A0A3A8AKL8_9HYPH)

HSP 1 Score: 150 bits (379), Expect = 1.320e-42
Identity = 79/111 (71.17%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M+S++TNVSAMTAL+SL +TN ++E TQ RI+TG+RV  A DNAAYWSIATTMRSDN AL TV+DALGLGAA +DVAYT +N+AIEV   IK+KLVAAR+PGV+R K+QAE
Sbjct:    1 MSSLMTNVSAMTALKSLQQTNSALETTQSRIATGFRVAEASDNAAYWSIATTMRSDNKALGTVQDALGLGAAKVDVAYTGVNSAIEVVDEIKSKLVAAREPGVDRAKVQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A7Y2BUP0_9HYPH (Flagellin n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7Y2BUP0_9HYPH)

HSP 1 Score: 150 bits (378), Expect = 1.910e-42
Identity = 79/111 (71.17%), Postives = 100/111 (90.09%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M+SI TN++AMTALQSL KT+M++ ETQ RISTG++VGTA DNAAY+SIA TMRSDNSA++TV+DALGLGAAT+DVAYTA+ + I+V   IKNKLVA+R+PG++RTK+QAE
Sbjct:    1 MSSINTNLAAMTALQSLQKTSMNLLETQTRISTGFKVGTAADNAAYFSIAATMRSDNSAMSTVQDALGLGAATVDVAYTALESTIDVVDEIKNKLVASREPGIDRTKVQAE 111
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BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Match: A0A101VPX0_9PROT (Flagellin n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VPX0_9PROT)

HSP 1 Score: 150 bits (379), Expect = 3.370e-42
Identity = 81/111 (72.97%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIATTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQPGVERTKIQAE 333
            M SI TNV+AMTALQSLN+TN +M ETQ+RI+TG RVG A+DNAAYWS+ATTMRSDN +L+TV DALGLGAAT+DVAYTAIN+AI+V   +K KLVAAR+PGV+R K+Q+E
Sbjct:    1 MNSINTNVAAMTALQSLNQTNKNMLETQQRIATGLRVGEAQDNAAYWSMATTMRSDNRSLSTVNDALGLGAATVDVAYTAINSAIDVADEMKAKLVAAREPGVDRVKVQSE 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52588.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V7C201_9HYPH1.560e-4476.58Flagellin n=2 Tax=Hyphomicrobiales TaxID=356 RepID... [more]
A0A2S5PCS7_HYPSQ6.520e-4473.87Flagellin n=1 Tax=Hyphomicrobium sp. TaxID=82 RepI... [more]
A0A6N6SZW1_9HYPH7.010e-4473.87Flagellin n=1 Tax=Hyphomicrobiaceae bacterium TaxI... [more]
A0A2E0IK71_9HYPH2.290e-4372.97Flagellin n=2 Tax=Ahrensia sp. TaxID=1872419 RepID... [more]
A0A3B0S0N0_9ZZZZ3.490e-4372.97Flagellin protein FlaA n=1 Tax=hydrothermal vent m... [more]
UPI00056EED474.690e-4375.68flagellin n=1 Tax=Thermopetrobacter sp. TC1 TaxID=... [more]
UPI00056FDCC46.780e-4373.87flagellin n=1 Tax=Thermopetrobacter sp. TC1 TaxID=... [more]
A0A3A8AKL8_9HYPH1.320e-4271.17Flagellin n=2 Tax=Phyllobacteriaceae TaxID=69277 R... [more]
A0A7Y2BUP0_9HYPH1.910e-4271.17Flagellin n=1 Tax=Hyphomicrobiales bacterium TaxID... [more]
A0A101VPX0_9PROT3.370e-4272.97Flagellin n=1 Tax=Alphaproteobacteria bacterium BR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52588contigP-wetherbeei_contig52588:212..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog991905.SL003B_3882
Preferred nameflaA
PFAMsFlagellin_C,Flagellin_N
Model size333
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02406
KEGG Pathwayko02020,ko02040,ko04621,ko04626,ko05132,ko05134,map02020,map02040,map04621,map04626,map05132,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576,GO:0005623,GO:0009288,GO:0042995,GO:0043226,GO:0043228,GO:0044464
Exons1
Evalue2.4e-41
EggNOG OGsCOG1344@1|root,COG1344@2|Bacteria,1MV1N@1224|Proteobacteria,2TUQQ@28211|Alphaproteobacteria,4BRVH@82117|unclassified Alphaproteobacteria
DescriptionFlagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Cds size333
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.512124-CDS-P-wetherbeei_contig52588:211..5441683186787.512124-CDS-P-wetherbeei_contig52588:211..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52588 212..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52588.1.1prot_P-wetherbeei_contig52588.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52588 212..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52588.1.1

>prot_P-wetherbeei_contig52588.1.1 ID=prot_P-wetherbeei_contig52588.1.1|Name=mRNA_P-wetherbeei_contig52588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MASILTNVSAMTALQSLNKTNMSMEETQRRISTGYRVGTAEDNAAYWSIA
TTMRSDNSALATVKDALGLGAATIDVAYTAINNAIEVTKAIKNKLVAARQ
PGVERTKIQAE
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mRNA from alignment at P-wetherbeei_contig52588:212..544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52588.1.1 ID=mRNA_P-wetherbeei_contig52588.1.1|Name=mRNA_P-wetherbeei_contig52588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig52588:212..544+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAGCATTCTCACAAACGTATCGGCAATGACAGCATTGCAAAGTCT
CAACAAAACCAACATGTCGATGGAGGAAACCCAACGGAGGATTTCCACGG
GCTACCGCGTGGGCACCGCCGAAGACAACGCCGCCTACTGGTCCATCGCA
ACCACGATGCGCTCGGACAACTCCGCACTGGCCACCGTGAAGGATGCCTT
GGGGCTGGGGGCAGCAACCATTGACGTGGCCTATACCGCCATAAACAATG
CAATTGAGGTGACCAAGGCAATAAAGAACAAGCTGGTAGCGGCCAGGCAG
CCAGGTGTTGAGCGGACCAAAATCCAGGCGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52588:212..544+

>mRNA_P-wetherbeei_contig52588.1.1 ID=mRNA_P-wetherbeei_contig52588.1.1|Name=mRNA_P-wetherbeei_contig52588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig52588:212..544+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAGCATTCTCACAAACGTATCGGCAATGACAGCATTGCAAAGTCT
CAACAAAACCAACATGTCGATGGAGGAAACCCAACGGAGGATTTCCACGG
GCTACCGCGTGGGCACCGCCGAAGACAACGCCGCCTACTGGTCCATCGCA
ACCACGATGCGCTCGGACAACTCCGCACTGGCCACCGTGAAGGATGCCTT
GGGGCTGGGGGCAGCAACCATTGACGTGGCCTATACCGCCATAAACAATG
CAATTGAGGTGACCAAGGCAATAAAGAACAAGCTGGTAGCGGCCAGGCAG
CCAGGTGTTGAGCGGACCAAAATCCAGGCGGAA
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