mRNA_P-wetherbeei_contig52573.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52573.1.1
Unique NamemRNA_P-wetherbeei_contig52573.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: UPI00187944E1 (pilin n=2 Tax=Ramlibacter sp. HM2 TaxID=2780087 RepID=UPI00187944E1)

HSP 1 Score: 162 bits (410), Expect = 1.320e-48
Identity = 83/134 (61.94%), Postives = 97/134 (72.39%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQ--SGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            YTKRAK+SE +LAASSCRT I EVYQ  SG AS  PG NGWGCEAG GTS P+  S+YVA+V T+ +G ++V  QG NDS +D   VTL PMA+    A FA++ G  LFGWRCG+  DGT I SKFLP SCRG
Sbjct:   35 YTKRAKMSEVILAASSCRTSITEVYQTVSGGASTAPGVNGWGCEAGTGTSQPTLQSKYVASVHTTADGQIRVTAQGFNDSNIDAKLVTLTPMASATTAATFANNAGSSLFGWRCGNTTDGTTILSKFLPGSCRG 168          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A353Y5Y5_9BURK (Pilin n=1 Tax=Curvibacter sp. TaxID=1888168 RepID=A0A353Y5Y5_9BURK)

HSP 1 Score: 159 bits (401), Expect = 2.630e-47
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            YTKRAK+SE +LAAS+CRT + E+YQSGSAS PPGANGWGCEAGAGTSNPS  S+YV+A+ T  NG + V    + D  + N  V+L P++  N  A FA +VG+ +FGWRCG PADGT + + FLP SCRG
Sbjct:   35 YTKRAKMSEVILAASACRTTVTEIYQSGSASSPPGANGWGCEAGAGTSNPSTPSKYVSAIVTDANGAITVT--STIDGALGN--VSLVPLSAPNAAATFAGNVGQAIFGWRCGLPADGTTVRANFLPGSCRG 162          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A127JQX0_9BURK (Pilin n=1 Tax=Ramlibacter tataouinensis TaxID=94132 RepID=A0A127JQX0_9BURK)

HSP 1 Score: 157 bits (396), Expect = 1.660e-46
Identity = 80/132 (60.61%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            YTKRAK+SE VLAAS+CR  I EVYQSGSAS+ P ANGWGCEAG GT NP  SS+YVA+V T  +G V V  QG ND+ +D   VTL P+  +   A++A+  G  LFGWRCG+  DGT IPS+FLP SC G
Sbjct:   35 YTKRAKVSEIVLAASACRPVITEVYQSGSASNAPAANGWGCEAGIGTPNPGVSSKYVASVKTDADGKVIVTAQGFNDAAIDAKVVTLTPLKDSTNRAIYANHAGSDLFGWRCGASTDGTTIPSRFLPGSCHG 166          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A317MW34_9GAMM (Type IV pilus assembly protein PilA n=2 Tax=Plasticicumulans acidivorans TaxID=886464 RepID=A0A317MW34_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 3.140e-36
Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            YTK+AK+SE VLAAS+CRT I EVYQ+GS++  PGANGWGCEA  GT   +A ++YV +VTT  NGV+ V  Q   D+ +DN  + L P A         +++G P+F W CG PA    IP+KFLP SCRG
Sbjct:   34 YTKKAKMSEVVLAASACRTTITEVYQTGSSTTSPGANGWGCEANTGTGG-TAPTKYVKSVTTDKNGVITVTAQNFGDTDIDNKSIVLTPYANDMAAMAAPTNMGSPVFKWVCG-PAGTDGIPAKFLPGSCRG 163          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A537G7Q5_9PROT (Pilin n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537G7Q5_9PROT)

HSP 1 Score: 127 bits (319), Expect = 5.570e-35
Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            YT RAK+SE +L  S+CRT I E+YQS  +S PPGAN W CE+       SAS++YVA + T+ +G V+V VQG + S V+  FVTL P+A+ N  A    ++G  LFGWRCG+PADGTD+  K+LP+SCRG
Sbjct:   32 YTVRAKMSEVILVMSACRTTITELYQS--SSSPPGANNWQCES-------SASTKYVAGLDTNDDGRVRVTVQGISAS-VNGKFVTLTPLASANTAASVTLNMGSGLFGWRCGAPADGTDLLPKYLPSSCRG 153          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: UPI00187D1FD3 (pilin n=1 Tax=Ramlibacter aquaticus TaxID=2780094 RepID=UPI00187D1FD3)

HSP 1 Score: 127 bits (319), Expect = 5.740e-35
Identity = 70/132 (53.03%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            Y+KRAK+SE +LAAS+CRT I EVYQSGS + P  A+GWGCE      +  ASS+YV +V T  NGV+ VM QG ND ++D   + L P      VA  ASD+GKP+F W CG  AD   +P KFLP +CRG
Sbjct:   33 YSKRAKMSELILAASACRTTITEVYQSGSTTPP--ADGWGCE------STDASSKYVRSVHTDQNGVITVMAQGFNDDKIDQMQIQLVPYRDATTVAKAASDLGKPIFRWVCGPTAD-NGVPLKFLPGTCRG 155          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A521VFZ3_9PROT (Pilin n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VFZ3_9PROT)

HSP 1 Score: 124 bits (310), Expect = 9.900e-34
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            Y KR ++SE +LA S+CRTP+AEVYQSG ++ P GA  WGCE     + PS  SRYV ++ T  NG +  M QG  DS +D   VTL P+  +   A  A+D+GK + GWRCGS ADGT IP+ +LPASC+G
Sbjct:   21 YVKRTRMSEVLLALSNCRTPVAEVYQSGGSTGP-GAGNWGCE----VTGPS--SRYVQSIATDPNGKIIAMAQGFGDSAIDGKVVTLVPLVGS-APANAATDMGKAVTGWRCGSLADGTTIPANYLPASCKG 144          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A536SJ41_9PROT (Pilin n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SJ41_9PROT)

HSP 1 Score: 124 bits (310), Expect = 1.080e-33
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGK-PLFGWRCGSPADGTDIPSKFLPASCRG 396
            Y+ RAK+SE +LAAS CRT I+EVYQSG+++    ANGWGCE    T+     ++YVA + T+ NG+V V  QG +++ +D   VTL P+A     AV  +D G   L+GWRCG+P DGT++PSK+LP SCRG
Sbjct:   21 YSIRAKMSEVILAASGCRTSISEVYQSGTSASAV-ANGWGCEI---TTAGVGGTKYVATINTTQNGLVSVTTQGFSNANIDGKVVTLLPLAKAGTAAV-GTDAGTVTLYGWRCGAPGDGTNVPSKYLPGSCRG 148          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A521VVY5_9PROT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VVY5_9PROT)

HSP 1 Score: 122 bits (306), Expect = 8.920e-33
Identity = 67/132 (50.76%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            Y  R ++SE VLA S+CRTP++EVYQ+G A  PPGA  WGCE     S PS  S YV ++ T  +G +  M QG +DS +D   VTL P+      A  A+D+GK + GWRCGSPADGT I + +LPASC+G
Sbjct:   50 YISRTRMSEVVLALSACRTPVSEVYQAGGA--PPGAGNWGCE----VSGPS--SIYVQSIATDASGKITAMAQGFSDSAIDGKVVTLVPLIG-GAAANAATDMGKAVTGWRCGSPADGTTISATYLPASCKG 172          
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Match: A0A1F3ZDR4_9PROT (Pilin n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 TaxID=1797483 RepID=A0A1F3ZDR4_9PROT)

HSP 1 Score: 121 bits (304), Expect = 1.510e-32
Identity = 68/132 (51.52%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNPSASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFASDVGKPLFGWRCGSPADGTDIPSKFLPASCRG 396
            Y KR ++SE VLA S+CRTPI+EVYQSGS + P GA  WGCE     S PS  S YV ++ T  NG +  M QG NDS +D   +TL PM         A+D+GK +  WRCGS ADGT IP  +LP+SC G
Sbjct:   43 YVKRTRMSEVVLAVSACRTPISEVYQSGSGTGP-GAGNWGCE----VSGPS--SVYVQSIATDANGKIMAMAQGFNDSAIDGKVLTLVPMIG-GAAGNAATDMGKAVTSWRCGSTADGTTIPVNYLPSSCHG 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52573.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00187944E11.320e-4861.94pilin n=2 Tax=Ramlibacter sp. HM2 TaxID=2780087 Re... [more]
A0A353Y5Y5_9BURK2.630e-4759.85Pilin n=1 Tax=Curvibacter sp. TaxID=1888168 RepID=... [more]
A0A127JQX0_9BURK1.660e-4660.61Pilin n=1 Tax=Ramlibacter tataouinensis TaxID=9413... [more]
A0A317MW34_9GAMM3.140e-3652.27Type IV pilus assembly protein PilA n=2 Tax=Plasti... [more]
A0A537G7Q5_9PROT5.570e-3553.03Pilin n=1 Tax=Betaproteobacteria bacterium TaxID=1... [more]
UPI00187D1FD35.740e-3553.03pilin n=1 Tax=Ramlibacter aquaticus TaxID=2780094 ... [more]
A0A521VFZ3_9PROT9.900e-3451.52Pilin n=2 Tax=Betaproteobacteria bacterium TaxID=1... [more]
A0A536SJ41_9PROT1.080e-3350.38Pilin n=1 Tax=Betaproteobacteria bacterium TaxID=1... [more]
A0A521VVY5_9PROT8.920e-3350.76Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A1F3ZDR4_9PROT1.510e-3251.52Pilin n=1 Tax=Betaproteobacteria bacterium RIFCSPL... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52573contigP-wetherbeei_contig52573:2..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog397945.Aave_4679
Preferred namepilA
PFAMsN_methyl,Pilin
Model size399
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02650
KEGG TC3.A.15.2
KEGG Pathwayko02020,map02020
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.85e-32
EggNOG OGsCOG4969@1|root,COG4969@2|Bacteria,1N7EQ@1224|Proteobacteria,2VVSJ@28216|Betaproteobacteria,4AF3V@80864|Comamonadaceae
DescriptionBelongs to the N-Me-Phe pilin family
Cds size399
COG categoryNU
BRITEko00000,ko00001,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.3152666-CDS-P-wetherbeei_contig52573:1..4001683186787.3152666-CDS-P-wetherbeei_contig52573:1..400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52573 2..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52573.1.1prot_P-wetherbeei_contig52573.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52573 2..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52573.1.1

>prot_P-wetherbeei_contig52573.1.1 ID=prot_P-wetherbeei_contig52573.1.1|Name=mRNA_P-wetherbeei_contig52573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
YTKRAKLSEAVLAASSCRTPIAEVYQSGSASDPPGANGWGCEAGAGTSNP
SASSRYVAAVTTSVNGVVKVMVQGSNDSQVDNHFVTLAPMATTNVVAVFA
SDVGKPLFGWRCGSPADGTDIPSKFLPASCRG*
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mRNA from alignment at P-wetherbeei_contig52573:2..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52573.1.1 ID=mRNA_P-wetherbeei_contig52573.1.1|Name=mRNA_P-wetherbeei_contig52573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig52573:2..400+ (Phaeothamnion wetherbeei SAG_119_79)
TACACCAAGCGCGCCAAACTGTCTGAGGCGGTTTTGGCTGCCTCTTCCTG TCGTACACCCATTGCCGAGGTTTACCAGTCCGGCAGCGCATCGGATCCTC CGGGGGCAAACGGATGGGGTTGCGAGGCTGGGGCTGGCACCTCCAACCCC AGTGCGTCATCCAGGTATGTGGCTGCTGTTACCACATCAGTCAATGGCGT GGTCAAGGTGATGGTGCAAGGATCCAATGACAGTCAGGTGGATAACCACT TTGTCACGCTTGCCCCTATGGCAACCACCAATGTTGTCGCCGTATTTGCG AGCGATGTCGGCAAACCGCTCTTCGGTTGGCGCTGTGGCTCGCCGGCCGA CGGAACGGACATTCCTTCCAAGTTTTTGCCAGCTTCTTGCCGCGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52573:2..400+

>mRNA_P-wetherbeei_contig52573.1.1 ID=mRNA_P-wetherbeei_contig52573.1.1|Name=mRNA_P-wetherbeei_contig52573.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig52573:2..400+ (Phaeothamnion wetherbeei SAG_119_79)
TACACCAAGCGCGCCAAACTGTCTGAGGCGGTTTTGGCTGCCTCTTCCTG
TCGTACACCCATTGCCGAGGTTTACCAGTCCGGCAGCGCATCGGATCCTC
CGGGGGCAAACGGATGGGGTTGCGAGGCTGGGGCTGGCACCTCCAACCCC
AGTGCGTCATCCAGGTATGTGGCTGCTGTTACCACATCAGTCAATGGCGT
GGTCAAGGTGATGGTGCAAGGATCCAATGACAGTCAGGTGGATAACCACT
TTGTCACGCTTGCCCCTATGGCAACCACCAATGTTGTCGCCGTATTTGCG
AGCGATGTCGGCAAACCGCTCTTCGGTTGGCGCTGTGGCTCGCCGGCCGA
CGGAACGGACATTCCTTCCAAGTTTTTGCCAGCTTCTTGCCGCGGTTGA
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