mRNA_P-wetherbeei_contig52568.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52568.1.1
Unique NamemRNA_P-wetherbeei_contig52568.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A370DKL1_9GAMM (Filament cap protein n=2 Tax=sulfur-oxidizing symbionts TaxID=32036 RepID=A0A370DKL1_9GAMM)

HSP 1 Score: 102 bits (255), Expect = 1.190e-23
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGNKTLDEIRTAINSATANTGVTASTLKDALG-YHLTLASNATGAANLVDVKF-----HTLADPIT 435
            Q+T+ +L+  +      A+S+D  + T  A  DA+ GSY I V+ LAE+H++ +A+ FAD+ TT +G  GDTM L VGT+SF V+IG KTL +I  AIN AT NTG++A  +++  G ++LTL S+ TG  N + V F     + +ADP+T
Sbjct:   58 QSTVDKLNGFSGIGLFSASSADEAVFTVNADNDAAAGSYDIVVQALAESHKMGSAS-FADSDTTTIGNAGDTMTLAVGTQSFNVDIGGKTLSQIEQAINEATDNTGISAGIIQENSGSFYLTLTSDETGVENAMTVSFADSGDNPIADPLT 207          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A497TZR6_9BACT (Flagellar hook-associated protein 2 n=6 Tax=Bacteria TaxID=2 RepID=A0A497TZR6_9BACT)

HSP 1 Score: 102 bits (255), Expect = 8.780e-23
Identity = 66/151 (43.71%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGNKTLDEIRTAINSATANTGVTASTLKDALG-YHLTLASNATGAANLVDVKF-----HTLADPIT 435
            Q+T+ +L+  +      A+S+D  + T  A  DA+ GSY I V+ LAE+H++ +A+ FAD+ TT +G  GDTM L VGT+SF V+IG KTL +I  AIN AT NTG++A  +++  G ++LTL S+ TG  N + V F     + +ADP+T
Sbjct:   58 QSTVDKLNGFSGIGLFSASSADEAVFTVNADNDAAAGSYDIIVQALAESHKMGSAS-FADSDTTTIGNAGDTMTLAVGTQSFNVDIGGKTLSQIEQAINEATDNTGISAGIIQENSGSFYLTLTSDETGVENAMSVSFADSGNNPIADPLT 207          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A8G0ZNZ5_9GAMM (Flagellar hook-associated protein 2 n=1 Tax=Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) TaxID=2496632 RepID=A0A8G0ZNZ5_9GAMM)

HSP 1 Score: 101 bits (251), Expect = 3.160e-22
Identity = 67/151 (44.37%), Postives = 95/151 (62.91%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGNKTLDEIRTAINSATANTGVTASTLKDALG-YHLTLASNATGAANLVDVKF-----HTLADPIT 435
            Q T+ +L+         A S +  + TA A  DA+ GSY I V+ LAE H++ +A+ FAD+ TT VG  GDTM LT+GT SFTV+IG KTL EI  AIN AT N+G++A  +++  G ++LTL S  TG  N + + F     +++ADP+T
Sbjct:   58 QDTVGKLNGFTDIDLFSAKSGNEAVFTAKADNDAAAGSYDILVQNLAEAHKMGSAS-FADSDTTVVGNAGDTMTLTIGTDSFTVDIGGKTLSEIEQAINEATDNSGISAGIIQENSGSFYLTLTSEKTGLENAMSLSFADSGSNSIADPLT 207          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A3B1AWV5_9ZZZZ (Flagellar cap protein FliD n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1AWV5_9ZZZZ)

HSP 1 Score: 91.3 bits (225), Expect = 1.290e-18
Identity = 62/150 (41.33%), Postives = 93/150 (62.00%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGNKTLDEIRTAINSATANTGVTASTLKD-ALGYHLTLASNATGAANLVDVKFHT-----LADPI 432
            Q+++T L   +  ++  ATS+D    TATA + A++ +Y I+V  LAE  +   +  FAD+ T  VG+ GD +  T+G+ SF+VEIG KTL EI  AINSA+ N G+TAS L++ +  Y L L+S+ TG AN + + F       +ADP+
Sbjct:   58 QSSITVLKSASSLQSYTATSADTAKFTATADSTAAKSTYDIQVTNLAEVQKQ-GSNAFADSDTVTVGSTGDKITATIGSSSFSVEIGGKTLSEIAEAINSASDNVGITASVLQETSSSYRLMLSSDDTGIANSMTLAFEDSGGLPIADPL 206          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A661F350_9GAMM (Flagellar hook-associated protein 2 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661F350_9GAMM)

HSP 1 Score: 83.2 bits (204), Expect = 9.870e-16
Identity = 61/133 (45.86%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIG--NKTLDEIRTAINSATANTGVTASTLKDALGYHLTLASNATGAAN 393
            QT M+EL  ++KF+     SSD  ++TATAG  A  GSY I V  LAE H+L +A  +AD  +T VG     + L+VGT SF V I   N TL  IR A+NSA+ NTGVTA+ + D  G  L  +S+  G  N
Sbjct:   58 QTAMSELGSLSKFQVFAPESSDENVLTATAGNTAVAGSYNINVTALAEKHKLASAA-YADINSTVVGE--GALTLSVGTDSFAVTIDGTNNTLSGIRDAVNSASDNTGVTATIITDNAGSRLIFSSDDEGTTN 187          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: F5SZH2_9GAMM (Flagellar hook-associated protein 2 n=4 Tax=Methylophaga TaxID=40222 RepID=F5SZH2_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 3.050e-14
Identity = 60/139 (43.17%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGD-TMALTVGTKSFTVEI--GNKTLDEIRTAINSATANTGVTASTLKDALGYHLTLASNATGAANLVDVK 408
            QT M  L   + FK  +A S D  + TATA + A+ GSY I+V ++A   +L A++ F D  +T    VG+ T+ ++VG +SF V I   N +L  IRTAIN+A+ NTGVTAS + D  G  L L SN TG  N + V 
Sbjct:   58 QTAMASLGSASSFKVFQANSQDEDLFTATATSSAASGSYNIDVTQIATRDKL-ASSAFTDYNST----VGEGTLTISVGAESFDVAIDSSNSSLAGIRTAINNASDNTGVTASIITDDSGARLVLTSNETGTENAISVS 191          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A6M2BQC8_9GAMM (Flagellar hook-associated protein 2 n=1 Tax=Solimonas terrae TaxID=1396819 RepID=A0A6M2BQC8_9GAMM)

HSP 1 Score: 76.6 bits (187), Expect = 1.980e-13
Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   52 ATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGN--KTLDEIRTAINSATANTGVTASTLKDALGYHLTLASNATGAANLVDVK 408
            ATSSD      TA + A+RGSY++EV  LA   +L  A+T   + +T +GA GD + LTVG+KSFTV +G+   +L +++ AIN+A+ N+GVTA+ + +  G HL L SN TGAAN V V 
Sbjct:   81 ATSSDTSXXXXTASSAATRGSYSVEVVGLATPEKL--ASTGYSSASTALGA-GD-VTLTVGSKSFTVTLGDTGNSLTDLKNAINNASDNSGVTATLITENGGTHLLLTSNDTGAANAVSVS 197          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: H0Q1E9_9RHOO (Flagellar hook-associated protein 2 n=1 Tax=Azoarcus sp. KH32C TaxID=748247 RepID=H0Q1E9_9RHOO)

HSP 1 Score: 72.8 bits (177), Expect = 4.480e-12
Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVG-DTMALTVGTK--------SFTVEIGNKTLDEIRTAINSATANTGVTASTLKD--ALGYHLTLASNATGAANLV 399
            QT    LS   KF A KAT +DA + +A AG  A+ GSYA+EVK LA+ H++ +A   ++TTT   G +  D   LT GT         S T++  N TL+ +R AIN  TA  GVTA+ + D  A    L + SN TG AN +
Sbjct:   58 QTAAEALSKTEKFSAFKATVADATLFSAAAGTGATAGSYAVEVKYLAQAHKIASAGFASNTTTVNTGTLTIDLGQLTGGTYTADASKTFSITIDSTNNTLEGVRNAIN--TAKKGVTATIVNDGSASPSRLVITSNDTGTANTI 199          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: S5TF07_9GAMM (Flagellar hook-associated protein 2 n=3 Tax=Cycloclasticus TaxID=34067 RepID=S5TF07_9GAMM)

HSP 1 Score: 70.5 bits (171), Expect = 2.860e-11
Identity = 56/151 (37.09%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   16 ELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGD-TMALTVGTKSFTVEI-GNKTLDEIRTAINSATANTGVTASTLKDALGYHLTLASNATGAANLVDVKFHTLADPITDLPDPFALA 462
            +L D A F+   A SS+ ++ TATA   A    Y IEV +LA+ H+L+  + FADT T     +GD T+  T G  SF++ I    TL +IR AIN+A  NTGV+AS +    G  L   + ++G  N + +   T  D   +  D F L+
Sbjct:   63 DLQDTADFQLRSALSSNDEVFTATADETADVSQYGIEVVQLAQAHKLITTSGFADTDT-----IGDGTLTFTQGDDSFSLTIDATDTLTDIRDAINAANDNTGVSASIINVDSGQQLVFTATSSGLDNAITI---TAVDSDGENSDEFGLS 205          
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Match: A0A7C7CBT3_9GAMM (Flagellar hook-associated protein 2 n=2 Tax=Chromatiaceae bacterium TaxID=2049432 RepID=A0A7C7CBT3_9GAMM)

HSP 1 Score: 69.7 bits (169), Expect = 5.280e-11
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = 1
Query:    1 QTTMTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLVAATTFADTTTTKVGAVGDTMALTVGTKSFTVEIG--NKTLDEIRTAINSATANTGVTASTLKDALGYHLTLASNATGAANLVDV 405
            Q+ +++LS + KFK   +TSS+    T TA +DA+ GSY+I V  +A  ++L +    A T     G    T+ +  G+ SF V I   N TL  IR+AIN A+ NTGVTA+ +    G +L L S+ +G AN + V
Sbjct:   58 QSALSDLSSLDKFKVFTSTSSNESSFTGTADSDAAGGSYSINVTAVAAVNKLQSGAFTASTDVLDTG----TLTIASGSDSFDVVIDGTNNTLAGIRSAINEASDNTGVTATIITADAGSYLVLTSDESGTANAISV 190          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52568.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A370DKL1_9GAMM1.190e-2343.71Filament cap protein n=2 Tax=sulfur-oxidizing symb... [more]
A0A497TZR6_9BACT8.780e-2343.71Flagellar hook-associated protein 2 n=6 Tax=Bacter... [more]
A0A8G0ZNZ5_9GAMM3.160e-2244.37Flagellar hook-associated protein 2 n=1 Tax=Gammap... [more]
A0A3B1AWV5_9ZZZZ1.290e-1841.33Flagellar cap protein FliD n=1 Tax=hydrothermal ve... [more]
A0A661F350_9GAMM9.870e-1645.86Flagellar hook-associated protein 2 n=1 Tax=Gammap... [more]
F5SZH2_9GAMM3.050e-1443.17Flagellar hook-associated protein 2 n=4 Tax=Methyl... [more]
A0A6M2BQC8_9GAMM1.980e-1347.11Flagellar hook-associated protein 2 n=1 Tax=Solimo... [more]
H0Q1E9_9RHOO4.480e-1241.67Flagellar hook-associated protein 2 n=1 Tax=Azoarc... [more]
S5TF07_9GAMM2.860e-1137.09Flagellar hook-associated protein 2 n=3 Tax=Cycloc... [more]
A0A7C7CBT3_9GAMM5.280e-1138.69Flagellar hook-associated protein 2 n=2 Tax=Chroma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52568contigP-wetherbeei_contig52568:79..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1026882.MAMP_01653
PFAMsFlagellin_IN,FliD_C,FliD_N
Model size465
Max annot lvl72273|Thiotrichales
KEGG koko:K02407
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.04e-14
EggNOG OGsCOG1345@1|root,COG1345@2|Bacteria,1MUVP@1224|Proteobacteria,1RS2S@1236|Gammaproteobacteria,460Z0@72273|Thiotrichales
DescriptionRequired for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Cds size456
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.2227254-CDS-P-wetherbeei_contig52568:78..5341683186787.2227254-CDS-P-wetherbeei_contig52568:78..534Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52568 79..534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.2342074-UTR-P-wetherbeei_contig52568:534..5431683186787.2342074-UTR-P-wetherbeei_contig52568:534..543Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52568 535..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52568.1.1prot_P-wetherbeei_contig52568.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52568 79..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52568.1.1

>prot_P-wetherbeei_contig52568.1.1 ID=prot_P-wetherbeei_contig52568.1.1|Name=mRNA_P-wetherbeei_contig52568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
MTELSDIAKFKAAKATSSDAKIMTATAGADASRGSYAIEVKRLAETHRLV
AATTFADTTTTKVGAVGDTMALTVGTKSFTVEIGNKTLDEIRTAINSATA
NTGVTASTLKDALGYHLTLASNATGAANLVDVKFHTLADPITDLPDPFAL
AT
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mRNA from alignment at P-wetherbeei_contig52568:79..543-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52568.1.1 ID=mRNA_P-wetherbeei_contig52568.1.1|Name=mRNA_P-wetherbeei_contig52568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig52568:79..543- (Phaeothamnion wetherbeei SAG_119_79)
CAGACCACCATGACCGAGTTGAGCGATATCGCCAAGTTCAAGGCCGCCAA GGCCACCTCCTCCGATGCCAAGATCATGACCGCGACCGCCGGCGCCGACG CCAGTCGCGGCTCCTACGCGATTGAAGTGAAGCGCCTGGCCGAGACTCAC CGCTTAGTCGCGGCGACGACCTTCGCCGACACCACGACCACCAAGGTCGG CGCGGTGGGCGACACCATGGCCCTCACGGTCGGCACCAAATCCTTCACCG TTGAAATCGGCAACAAGACGCTCGACGAGATTCGTACTGCGATCAATTCC GCGACCGCCAATACCGGTGTCACCGCCTCGACCCTCAAGGATGCCCTTGG TTATCACTTGACCTTGGCCAGCAACGCCACCGGCGCGGCCAATCTCGTCG ACGTCAAGTTTCATACCCTGGCCGACCCGATAACCGATCTGCCCGACCCG TTTGCCTTGGCCACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52568:79..543-

>mRNA_P-wetherbeei_contig52568.1.1 ID=mRNA_P-wetherbeei_contig52568.1.1|Name=mRNA_P-wetherbeei_contig52568.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig52568:79..543- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGAGTTGAGCGATATCGCCAAGTTCAAGGCCGCCAAGGCCACCTC
CTCCGATGCCAAGATCATGACCGCGACCGCCGGCGCCGACGCCAGTCGCG
GCTCCTACGCGATTGAAGTGAAGCGCCTGGCCGAGACTCACCGCTTAGTC
GCGGCGACGACCTTCGCCGACACCACGACCACCAAGGTCGGCGCGGTGGG
CGACACCATGGCCCTCACGGTCGGCACCAAATCCTTCACCGTTGAAATCG
GCAACAAGACGCTCGACGAGATTCGTACTGCGATCAATTCCGCGACCGCC
AATACCGGTGTCACCGCCTCGACCCTCAAGGATGCCCTTGGTTATCACTT
GACCTTGGCCAGCAACGCCACCGGCGCGGCCAATCTCGTCGACGTCAAGT
TTCATACCCTGGCCGACCCGATAACCGATCTGCCCGACCCGTTTGCCTTG
GCCACC
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