mRNA_P-wetherbeei_contig5254.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5254.2.1
Unique NamemRNA_P-wetherbeei_contig5254.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A352KH82_9PROT (DsbC domain-containing protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KH82_9PROT)

HSP 1 Score: 149 bits (375), Expect = 6.970e-41
Identity = 78/176 (44.32%), Postives = 104/176 (59.09%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDA-LQAALARVPRQQDENSQP----RIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADLLF 513
            I  R GWKTYWR+ GE+GLPP F + + +N   P+I WP P R    G ESYGYD  V+  F++ P D TKPV+L +Q  YAVC +IC PEQA L LT+ P   ++ P+  A L  AL +VPR Q  ++       I +  + +  +  +L+V A +  GF  PDLF DG  D LF
Sbjct:   92 IATRPGWKTYWRAAGEAGLPPQFNWLSVENAQLPEILWPVPMRFVTDGLESYGYDDGVLLPFHIVPDDPTKPVRLHLQARYAVCLEICVPEQAELTLTVSPQATDSGPEAAAKLNRALQQVPRLQSGDATTDLPMMIESVALVETASSAMLVVTARSQTGFVAPDLFVDGAGDFLF 267          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A2N3E159_9PROT (Cytochrome C biogenesis protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E159_9PROT)

HSP 1 Score: 134 bits (336), Expect = 1.390e-35
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLA-NATPDRDALQAALARVPRQQDENSQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADLLF 513
            + L +GWKTYW+ PG+SG+PPVF + A +N    +++WP P+R    G  +YGY+G V++   V P DA++PV L + + Y +C DIC P +A L LT+PPG A   +P    L+AALARVP      + P +     ++  A T+ +  +   +G   P L  DGP ++ F
Sbjct:   54 LRLAEGWKTYWKKPGDSGIPPVFDWSASENVAGVELRWPVPERFDAPGDITYGYEGEVVWPLRVVPEDASRPVTLRLSMFYGICSDICVPREANLELTVPPGAAIGDSPAASRLRAALARVP---VTPADPGMLDIRWREASAPTLEVNLSGCGKGCTPPMLIVDGPKNIWF 222          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A1G5JM09_9HYPH (Thiol-disulfide interchange protein, contains DsbC and DsbD domains n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5JM09_9HYPH)

HSP 1 Score: 130 bits (326), Expect = 4.870e-34
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDALQAALARVPRQQDENSQPRIGAAHVQ-KNGAQTILLVKAEASQGFNIPDLFADGP 498
            I L +G+KTYWR+PGESGLPP F + A +N +  +++WPAPKR       +Y Y   V+    V+P  A KPVKL + VDY VCKDIC P  A L +    GL  A P R A++  +A+VPR+Q   +Q  +    VQ +NGA+  L V   A  G   P LFA+ P
Sbjct:   57 ITLDEGFKTYWRNPGESGLPPSFDWSASENVESVEVQWPAPKRHEDAAGVAYVYSHEVVLPVVVKPKAADKPVKLALVVDYGVCKDICIPAHADLSM----GLTEAGPQRAAIETFMAKVPRRQAVGAQGELTVLSVQPRNGAKPELSVSVLAPSGEK-PALFAEAP 218          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A6N6SVW6_9HYPH (DsbC domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SVW6_9HYPH)

HSP 1 Score: 128 bits (322), Expect = 2.420e-33
Identity = 70/172 (40.70%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPP-GLANATPDRDALQAALARVPRQQD--ENSQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADL 507
            I L  GWKTYWR PG++G+PPVF + A DN    ++ +PAP RL     E+ GY G ++F   V P DA KPV L++ +++ VC+DIC P +AV+ +T+P  GL+   P    + AAL RVPRQQ    +  P         +G++  L+V+A    G N   LF + P  L
Sbjct:   63 ISLADGWKTYWRVPGDAGVPPVFDWAASDNVGAVKVLYPAPLRLSEPAAETIGYKGSMVFPVEVTPRDAAKPVVLKLTMEFGVCRDICIPSEAVMAVTIPAKGLSG--PPLKPIAAALERVPRQQSARRSGDPDFKRVMATLDGSEARLVVEAAFPGGSNGAQLFVEAPDGL 232          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A2E5KRM1_9PROT (DsbC domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5KRM1_9PROT)

HSP 1 Score: 124 bits (312), Expect = 6.330e-32
Identity = 70/176 (39.77%), Postives = 103/176 (58.52%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTL-PPGLAN---ATPDRDALQAALARVPRQQDEN-SQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADLLF 513
            I L  GWKTYWR+PG++G+P  F + A  N +   + WPAPKR+  +G +S+GY+  VIF   V+  D + PV+++++V YAVCK IC P +A + L L   G A     T  R  +Q   +RVP   D N +Q  I  A V     + +L +   A + F+ PD+F +GPAD++F
Sbjct:   53 IRLEAGWKTYWRNPGDAGIPTFFDWSASQNVEDVALAWPAPKRIPFEGLDSFGYEEEVIFPALVRLVDPSSPVRIDVKVAYAVCKHICVPLEAHVTLELLAVGTAQETATTAHRSLIQRFESRVP---DRNGTQLDIIEARVGGRTGRQVLHLTVGAEESFHHPDVFVEGPADVIF 225          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: UPI001EF5077F (hypothetical protein n=1 Tax=Microvirga sp. ACRRW TaxID=2918205 RepID=UPI001EF5077F)

HSP 1 Score: 124 bits (310), Expect = 1.370e-31
Identity = 66/171 (38.60%), Postives = 91/171 (53.22%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDALQAALARVPRQQDENSQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADLLF 513
            I+L QG+KTYWR+PGESGLPP F + A +N    +++WPAPKR       +Y Y   V+    V+P D  KP+KL + VDY +CKDIC P  A L + L      + P R  ++ A+A+VPR+Q    Q  +         A T   V    +     P LF +GP +  F
Sbjct:   57 IKLDQGFKTYWRNPGESGLPPSFDWSASENVASVEVQWPAPKRHEDAAGVAYVYSRDVVLPVLVKPKDTGKPIKLALAVDYGICKDICIPAHADLSVAL----TESAPQRAVIEQAMAKVPRRQGLGEQADLSILSAVSPAAGTTHFVVTVRAPAGTSPALFTEGPENWYF 223          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A2N3C385_9PROT (DsbC domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3C385_9PROT)

HSP 1 Score: 122 bits (307), Expect = 2.920e-31
Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDA--LQAALARVPRQQDENSQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGPADLLF 513
            + L +GWKTYW+ PG+SG+PPVF + A +N     + WP P+R    G  +YGY+G V++   V P DA++PV L + + Y +C DIC P +A L LT+P G A     + A  L+AALARVP    +     I     ++  A  + +  A   +G   P L  DGP ++ F
Sbjct:   54 LRLAEGWKTYWKRPGDSGIPPVFDWSASENVASVDLSWPVPERFDAPGDITYGYEGEVVWPLRVVPEDASRPVTLRLSMFYGICSDICVPREANLELTVPSG-AETDDGQGASRLRAALARVPVPPADADMLDI---RWREASAPALEVSLAGCGKGCTPPMLIVDGPKNIWF 222          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A7X3MUU5_9HYPH (DsbC domain-containing protein n=1 Tax=Microvirga makkahensis TaxID=1128670 RepID=A0A7X3MUU5_9HYPH)

HSP 1 Score: 121 bits (304), Expect = 3.470e-31
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDALQAALARVPRQQDENSQPRIGAAHVQKNGAQTILLVKAEASQGFNIPDLFADGP 498
            I L  G+KTYWR+PGESGLPP F + A +N    +++WPAPKR       +Y Y   VI    V+   A +PVKL + VDY VCKDIC P  A L L L     ++ PDR  ++ A+A+VPR+Q   +Q  +    VQ    + + L  +  +     P LFA+GP
Sbjct:   16 ITLDPGFKTYWRNPGESGLPPSFDWSASENVADVEVRWPAPKRYEDAAGIAYVYSQKVILPLLVESKVADRPVKLALTVDYGVCKDICIPAHADLSLAL----TDSGPDRIEIEQAMAKVPRKQALGAQGPLAVLSVQPKAGEPLALSVSVRTPIGTKPVLFAEGP 177          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: A0A3B8XNY1_9HYPH (DsbC domain-containing protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A3B8XNY1_9HYPH)

HSP 1 Score: 122 bits (305), Expect = 6.490e-31
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDR----DALQAALARVP 363
            ++L  GWKTYW+ PG+SG+PP F + A +N    +++WPAP+R    G  ++GY   V++   V P DA+ PV L + + Y +C DIC P QA L L +PP  A  TP+     + L+AALARVP
Sbjct:   56 LQLADGWKTYWKQPGDSGIPPSFDWSASENVAGVELRWPAPERFDAPGDITFGYGNGVLWPLRVVPEDASLPVTLRLSMYYGICSDICVPRQAELELVVPPAAAGETPEETLFANRLRAALARVP 180          
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Match: UPI00141B6F65 (hypothetical protein n=1 Tax=Microvirga pakistanensis TaxID=1682650 RepID=UPI00141B6F65)

HSP 1 Score: 122 bits (305), Expect = 6.490e-31
Identity = 71/167 (42.51%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    1 IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQESYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLPPGLANATPDRDALQAALARVPRQQDENSQPRIGAAHVQ-KNGAQTILLVKAEASQGFNIPDLFADGP 498
            I L  G+KTYWR+PGESGLPP F + A +N     ++WPAP+R       +Y Y G VI    V+P  A KPVKL + VDY +CKDIC P  A L   L    A+  PDR  ++ A+A+VPR+Q       +    V+ K G    L V   A  G + P LFA+ P
Sbjct:   57 ITLDSGFKTYWRNPGESGLPPSFDWSASENVAHVDVQWPAPERHEDAAGIAYVYSGAVILPVLVRPKAADKPVKLALTVDYGICKDICIPAHADLHRPL----ADPGPDRTTIEGAMAKVPRKQALGGPGELAVLSVEPKAGDTPALSVSVRAPTGTS-PVLFAEAP 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5254.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KH82_9PROT6.970e-4144.32DsbC domain-containing protein n=4 Tax=Alphaproteo... [more]
A0A2N3E159_9PROT1.390e-3538.95Cytochrome C biogenesis protein n=1 Tax=Alphaprote... [more]
A0A1G5JM09_9HYPH4.870e-3444.31Thiol-disulfide interchange protein, contains DsbC... [more]
A0A6N6SVW6_9HYPH2.420e-3340.70DsbC domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A2E5KRM1_9PROT6.330e-3239.77DsbC domain-containing protein n=1 Tax=Alphaproteo... [more]
UPI001EF5077F1.370e-3138.60hypothetical protein n=1 Tax=Microvirga sp. ACRRW ... [more]
A0A2N3C385_9PROT2.920e-3138.15DsbC domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A7X3MUU5_9HYPH3.470e-3140.96DsbC domain-containing protein n=1 Tax=Microvirga ... [more]
A0A3B8XNY1_9HYPH6.490e-3144.00DsbC domain-containing protein n=2 Tax=Hyphomicrob... [more]
UPI00141B6F656.490e-3142.51hypothetical protein n=1 Tax=Microvirga pakistanen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5254contigP-wetherbeei_contig5254:2103..2615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1411123.JQNH01000001_gene400
PFAMsDsbC
Model size513
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.54e-32
EggNOG OGsCOG4233@1|root,COG4233@2|Bacteria,1REVE@1224|Proteobacteria,2VEXK@28211|Alphaproteobacteria
Descriptionto be involved in C-type cytochrome biogenesis
Cds size513
COG categoryCO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.1022456-CDS-P-wetherbeei_contig5254:2102..26151683186787.1022456-CDS-P-wetherbeei_contig5254:2102..2615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5254 2103..2615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5254.2.1prot_P-wetherbeei_contig5254.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5254 2103..2615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5254.2.1

>prot_P-wetherbeei_contig5254.2.1 ID=prot_P-wetherbeei_contig5254.2.1|Name=mRNA_P-wetherbeei_contig5254.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
IELRQGWKTYWRSPGESGLPPVFTFRAHDNTDRPQIKWPAPKRLHLQGQE
SYGYDGPVIFLFYVQPHDATKPVKLEIQVDYAVCKDICAPEQAVLRLTLP
PGLANATPDRDALQAALARVPRQQDENSQPRIGAAHVQKNGAQTILLVKA
EASQGFNIPDLFADGPADLLF
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mRNA from alignment at P-wetherbeei_contig5254:2103..2615+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5254.2.1 ID=mRNA_P-wetherbeei_contig5254.2.1|Name=mRNA_P-wetherbeei_contig5254.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig5254:2103..2615+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGAACTGCGCCAGGGCTGGAAAACTTATTGGCGTTCGCCGGGTGAAAG CGGTCTGCCGCCGGTTTTTACATTCCGCGCGCATGACAATACAGATCGGC CGCAAATCAAATGGCCCGCGCCAAAACGCCTGCACCTTCAGGGGCAGGAA TCCTATGGCTATGACGGCCCGGTGATATTTCTGTTTTATGTTCAGCCGCA CGATGCCACGAAACCGGTAAAGCTGGAAATTCAGGTGGACTATGCCGTGT GCAAGGACATCTGTGCGCCAGAACAGGCGGTGCTTCGCCTGACCCTGCCG CCAGGTTTGGCCAATGCCACGCCAGATCGTGATGCTTTGCAGGCGGCGCT GGCCCGGGTTCCCCGGCAACAGGATGAAAATAGCCAGCCCCGCATTGGCG CTGCCCATGTGCAGAAAAATGGGGCGCAAACTATTTTGCTGGTAAAGGCC GAGGCTAGTCAGGGTTTTAACATACCGGATCTGTTTGCCGACGGTCCGGC CGATCTGCTTTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5254:2103..2615+

>mRNA_P-wetherbeei_contig5254.2.1 ID=mRNA_P-wetherbeei_contig5254.2.1|Name=mRNA_P-wetherbeei_contig5254.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig5254:2103..2615+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGAACTGCGCCAGGGCTGGAAAACTTATTGGCGTTCGCCGGGTGAAAG
CGGTCTGCCGCCGGTTTTTACATTCCGCGCGCATGACAATACAGATCGGC
CGCAAATCAAATGGCCCGCGCCAAAACGCCTGCACCTTCAGGGGCAGGAA
TCCTATGGCTATGACGGCCCGGTGATATTTCTGTTTTATGTTCAGCCGCA
CGATGCCACGAAACCGGTAAAGCTGGAAATTCAGGTGGACTATGCCGTGT
GCAAGGACATCTGTGCGCCAGAACAGGCGGTGCTTCGCCTGACCCTGCCG
CCAGGTTTGGCCAATGCCACGCCAGATCGTGATGCTTTGCAGGCGGCGCT
GGCCCGGGTTCCCCGGCAACAGGATGAAAATAGCCAGCCCCGCATTGGCG
CTGCCCATGTGCAGAAAAATGGGGCGCAAACTATTTTGCTGGTAAAGGCC
GAGGCTAGTCAGGGTTTTAACATACCGGATCTGTTTGCCGACGGTCCGGC
CGATCTGCTTTTT
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