mRNA_P-wetherbeei_contig52505.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52505.1.1
Unique NamemRNA_P-wetherbeei_contig52505.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A8TVV4_9PROT (Histidine kinase n=1 Tax=alpha proteobacterium BAL199 TaxID=331869 RepID=A8TVV4_9PROT)

HSP 1 Score: 116 bits (290), Expect = 2.010e-27
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query:   31 DDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQA----QLDNTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQH 498
            D++R DP T  +   V  +  GT VLK+KIY   G T++S+DPKQIG DYSKN  FL A+ G  AS L +RD+F++I+G   ++ VL SY+         +++ V E YTDVTE +     +L+  G++LV   AI+L+A F     ++  AE  +H++H
Sbjct:   69 DEIRADPLTRGVNQEVSKITAGTRVLKVKIYSLTGITLYSSDPKQIGGDYSKNPHFLIALGGGVASNLSRRDRFESIHGPRSDVVVLESYVPAHSPSEDSKVIAVMEIYTDVTELEGNILGRLEVLGAMLV--IAILLVAAFGVQLLVLRRAESRLHQEH 226          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A6I5NNV2_9CYAN (HAMP domain-containing histidine kinase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5NNV2_9CYAN)

HSP 1 Score: 111 bits (278), Expect = 1.670e-25
Identity = 60/166 (36.14%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQH 498
            FL      + +++   PTT+ L   +    +G +V K+K++D  GRT+FS+D  QIGAD S+++ FL A++G   S+L  RD FQA+   + +  +LSSY+ I   G+  EI+GV E YTDVT     +  T   ++  S ++L  +FI L   V  A+R++ +Q+
Sbjct:  102 FLSSTQNLSDEELAAHPTTERLYQDILAKFEGVHVAKVKVFDLQGRTVFSSDLSQIGADKSQSQGFLAAISGSVVSQLGHRDTFQALQTTLTDRHLLSSYVPIYAEGSEQEILGVFELYTDVTPLVTHISQTQRSIILGSVLILAVLFILLLVFVQRADRLLKQQY 267          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A351SUL8_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A351SUL8_9DELT)

HSP 1 Score: 110 bits (275), Expect = 2.420e-25
Identity = 69/168 (41.07%), Postives = 99/168 (58.93%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQHAN 504
            FL  AS  + D++R  P T  L  AV  +++GT V+KIK+YD  GRT+FST+PKQIG + S N  FL   AG+  S L  RD+F A +  ++N  +L SYI I P G    +  V E Y DVT F  +++ T   +V + A+VL  ++  L  IV  A+ ++ RQ+A 
Sbjct:   61 FLTWASGLSDDELRAHPETAKLYQAVLGMMKGTAVVKIKVYDLAGRTVFSTEPKQIGENQSANAGFLAGRAGKVVSSLVHRDRFNAFDHIIENRNLLQSYIPI-PRGPQEPVKAVFELYYDVTSFLQKVERTKRSVVISVALVLALLYGVLFFIVRHADGLIRRQYAE 227          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: UPI001F330944 (response regulator n=2 Tax=Acaryochloris TaxID=155977 RepID=UPI001F330944)

HSP 1 Score: 109 bits (273), Expect = 9.910e-25
Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTG-SLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQHA 501
            FL      +  +++  P T  L   +    Q   +LKIK++DT GRT+FST  KQIG D  +++ F  A+ G+  S L  RD F  + G + +  +LSSY+ +RPSG  G+I GV E YTDVT   AQ++ T  ++L GTS  VL  ++  L AIV+  +R++  +HA
Sbjct:   61 FLGNTQSLSTKELKSHPQTLKLTEEIETWAQALPILKIKVFDTEGRTVFSTSTKQIGQDKRQSKGFQIAIKGQARSLLNHRDTFTGMQGRVSDRNLLSSYLPLRPSGPKGKIEGVFELYTDVTPLMAQVETTQRNILWGTSG-VLAILYGVLFAIVYRGDRIIQEKHA 227          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A523FTT4_9PROT (Histidine kinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FTT4_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.170e-24
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   64 LRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLD--NTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQH 498
            L SAVH  + GT +LK+KIYDT GRT++ST+P+++G DYS N  F  A+AG   +E E R +F A +G  +NIW+LS ++ +      G ++GV + Y D+T  ++ ++  +  + LV   A +LL  F+ L  +VW AER    +H
Sbjct:   97 LDSAVHTYLAGTPILKVKIYDTAGRTVYSTNPEELGQDYSANPSFKAALAGGEPTEQEYRRRFTAWSGPRQNIWLLSGHMPMLAGHDHGAVIGVIKIYRDLTLLRSSIERLSMNTTLVIAGAFMLL--FVLLVTMVWRAERKTQAEH 241          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A351SVD1_9DELT (Histidine kinase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A351SVD1_9DELT)

HSP 1 Score: 107 bits (268), Expect = 4.510e-24
Identity = 68/168 (40.48%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQHAN 504
            F+   S  N D +R  P T VLR AV   + G  V+KIKIY+  G T+FST+ KQIG D S N  FL A +G+ ASEL  RD F A    ++N  ++SSY+ IR S   G + GV E Y DVT F  ++  T   +V    ++L  ++  L  IV  A+R++ +Q + 
Sbjct:   61 FVTSVSGLNGDQLRAHPVTSVLRKAVQVHMSGIPVVKIKIYNLSGLTVFSTEEKQIGEDKSSNAGFLSARSGKAASELTHRDTFSAFEQTIENRDLISSYLPIRRS-EGGPVEGVFELYYDVTTFLQKIKQTQETVVIGVVLLLGFLYGVLFLIVRRADRILKQQDSE 227          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A2N2MFG4_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-6 TaxID=2013729 RepID=A0A2N2MFG4_9CHLR)

HSP 1 Score: 104 bits (260), Expect = 4.830e-24
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVT 369
            FL  AS  +PD++R  P T  LR AV +  +G +++K+KIY+  G T+FST+  QIG D S+N  FL A+ G   +EL  RD F A  GE++N  V+SSY+ IR  GA+G + GV E Y DVT
Sbjct:   78 FLNSASDLSPDEIRAHPETARLRQAVLEQTRGLSIVKVKIYNLQGMTVFSTEESQIGEDKSENAGFLTALNGGLVNELTHRDTFSAFEGELENRDVISSYVPIR-RGASG-VEGVFEVYDDVT 198          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A3B9J790_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3B9J790_9CHLR)

HSP 1 Score: 104 bits (260), Expect = 4.830e-24
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVT 369
            FL  AS  + D++R  P T  LR A+ +   G +V+K+KIYD  G T+FST   QIG D S+N  FL A+ G  ASEL  RD F A  GE+++  V+SSY+ IR  G+A E  GV E Y DVT
Sbjct:   78 FLGSASSLSADEIRAHPETARLRQALLEQTSGLSVIKVKIYDLKGMTVFSTQESQIGEDKSQNAGFLAALNGGLASELTHRDTFSAFEGEIEDRDVISSYVPIRRGGSAVE--GVFEVYDDVT 198          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: B0C7P6_ACAM1 (Two-component hybrid sensor and regulator histidine kinase n=2 Tax=Acaryochloris TaxID=155977 RepID=B0C7P6_ACAM1)

HSP 1 Score: 107 bits (266), Expect = 8.650e-24
Identity = 62/168 (36.90%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTG-SLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQHA 501
            FL          ++  P T  L   +    +G  VLK+K++DT GRT+FST  KQIG D  +++ F  A+ G++ S +  +D F  + G+MK+  +LSSY+ +RP G  G I GV E YTDVT    +++ T  ++L GTS ++ L ++  L AIV+  +R++  +HA
Sbjct:   61 FLSNTQSLTAKQLKSHPQTLKLTKDIESWAEGLPVLKVKVFDTQGRTVFSTSTKQIGQDKRQSKGFQAAIQGQSRSFINHKDTFTGMKGQMKDRNLLSSYLPLRPDGPDGSIEGVFEMYTDVTPLLERVETTQRNILWGTSGVLGL-LYGVLFAIVYRGDRIIQEKHA 227          
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Match: A0A846A4S7_9CYAN (HAMP domain-containing histidine kinase n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A4S7_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 9.810e-24
Identity = 58/166 (34.94%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    1 FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFSTDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSYIAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTGSLLVGTSAIVLLAIFIFLAAIVWIAERVMHRQH 498
            FL      +  +++  P    ++ AV   ++G +V K+K++D  GRT+FSTD  QIGAD S++  F+ A AG   S+L  RD FQ+I G++K   +LSSY+ I  SG   ++ GV E Y+DVT   +Q+  T   ++  S ++L+ ++  L  ++  A++++ +QH
Sbjct:   98 FLQSTGPLSDQELKHHPKMAEMQQAVFAQMKGLSVAKVKVFDLEGRTVFSTDAAQIGADKSQSSGFMAARAGEVVSQLGHRDSFQSIQGQLKEPDLLSSYVPI-VSGTEADVQGVLELYSDVTPLMSQIYQTQRTILLGSFVILIGLYSALFLVIKRADQMIKQQH 262          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52505.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A8TVV4_9PROT2.010e-2740.63Histidine kinase n=1 Tax=alpha proteobacterium BAL... [more]
A0A6I5NNV2_9CYAN1.670e-2536.14HAMP domain-containing histidine kinase n=1 Tax=Le... [more]
A0A351SUL8_9DELT2.420e-2541.07Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
UPI001F3309449.910e-2539.29response regulator n=2 Tax=Acaryochloris TaxID=155... [more]
A0A523FTT4_9PROT1.170e-2440.14Histidine kinase n=1 Tax=Alphaproteobacteria bacte... [more]
A0A351SVD1_9DELT4.510e-2440.48Histidine kinase n=1 Tax=Deltaproteobacteria bacte... [more]
A0A2N2MFG4_9CHLR4.830e-2447.15Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A3B9J790_9CHLR4.830e-2447.97Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
B0C7P6_ACAM18.650e-2436.90Two-component hybrid sensor and regulator histidin... [more]
A0A846A4S7_9CYAN9.810e-2434.94HAMP domain-containing histidine kinase n=1 Tax=Le... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52505contigP-wetherbeei_contig52505:35..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog329726.AM1_0220
PFAMsCHASE4,GAF,GAF_3,HAMP,HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_9,Response_reg
Model size504
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-24
EggNOG OGsCOG0642@1|root,COG0784@1|root,COG0784@2|Bacteria,COG2205@2|Bacteria,1G09B@1117|Cyanobacteria
DescriptionHistidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Cds size504
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.507931-CDS-P-wetherbeei_contig52505:34..5381683186786.507931-CDS-P-wetherbeei_contig52505:34..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52505 35..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52505.1.1prot_P-wetherbeei_contig52505.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52505 35..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52505.1.1

>prot_P-wetherbeei_contig52505.1.1 ID=prot_P-wetherbeei_contig52505.1.1|Name=mRNA_P-wetherbeei_contig52505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
FLIGASRRNPDDVRLDPTTDVLRSAVHDLVQGTNVLKIKIYDTHGRTIFS
TDPKQIGADYSKNERFLGAMAGRTASELEKRDKFQAINGEMKNIWVLSSY
IAIRPSGAAGEIVGVAETYTDVTEFQAQLDNTGSLLVGTSAIVLLAIFIF
LAAIVWIAERVMHRQHAN
back to top

mRNA from alignment at P-wetherbeei_contig52505:35..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52505.1.1 ID=mRNA_P-wetherbeei_contig52505.1.1|Name=mRNA_P-wetherbeei_contig52505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig52505:35..538- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTCATCGGCGCCAGCCGTCGCAATCCCGACGACGTCCGCCTGGATCC GACCACGGATGTGCTGCGTTCAGCCGTGCACGATCTGGTGCAGGGCACCA ACGTGCTCAAGATCAAGATCTACGACACGCACGGGCGCACGATCTTCTCG ACAGATCCGAAGCAGATCGGCGCCGACTACAGCAAGAACGAGCGATTCCT CGGGGCAATGGCCGGCCGCACCGCGAGCGAACTGGAGAAGCGCGACAAGT TCCAGGCGATCAACGGCGAGATGAAGAACATCTGGGTCCTGTCGAGCTAT ATCGCGATCCGGCCCAGCGGCGCGGCGGGCGAGATTGTCGGCGTGGCGGA GACCTATACCGACGTCACCGAATTCCAGGCGCAACTGGACAATACCGGAT CGCTGCTGGTTGGCACCTCGGCCATCGTGCTGCTGGCGATCTTCATCTTC CTGGCGGCGATCGTGTGGATCGCGGAACGCGTGATGCACCGCCAGCATGC GAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52505:35..538-

>mRNA_P-wetherbeei_contig52505.1.1 ID=mRNA_P-wetherbeei_contig52505.1.1|Name=mRNA_P-wetherbeei_contig52505.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig52505:35..538- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTCATCGGCGCCAGCCGTCGCAATCCCGACGACGTCCGCCTGGATCC
GACCACGGATGTGCTGCGTTCAGCCGTGCACGATCTGGTGCAGGGCACCA
ACGTGCTCAAGATCAAGATCTACGACACGCACGGGCGCACGATCTTCTCG
ACAGATCCGAAGCAGATCGGCGCCGACTACAGCAAGAACGAGCGATTCCT
CGGGGCAATGGCCGGCCGCACCGCGAGCGAACTGGAGAAGCGCGACAAGT
TCCAGGCGATCAACGGCGAGATGAAGAACATCTGGGTCCTGTCGAGCTAT
ATCGCGATCCGGCCCAGCGGCGCGGCGGGCGAGATTGTCGGCGTGGCGGA
GACCTATACCGACGTCACCGAATTCCAGGCGCAACTGGACAATACCGGAT
CGCTGCTGGTTGGCACCTCGGCCATCGTGCTGCTGGCGATCTTCATCTTC
CTGGCGGCGATCGTGTGGATCGCGGAACGCGTGATGCACCGCCAGCATGC
GAAC
back to top