mRNA_P-wetherbeei_contig525.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig525.3.1
Unique NamemRNA_P-wetherbeei_contig525.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig525.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig525contigP-wetherbeei_contig525:3218..3719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size502
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.387829-UTR-P-wetherbeei_contig525:3217..32391683186786.387829-UTR-P-wetherbeei_contig525:3217..3239Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig525 3218..3239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.3980641-CDS-P-wetherbeei_contig525:3239..37191683186786.3980641-CDS-P-wetherbeei_contig525:3239..3719Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig525 3240..3719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig525.3.1prot_P-wetherbeei_contig525.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig525 3240..3719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig525.3.1

>prot_P-wetherbeei_contig525.3.1 ID=prot_P-wetherbeei_contig525.3.1|Name=mRNA_P-wetherbeei_contig525.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MKSTPRTAMLTASPAARSVVQSRSDGAGCGGGDDADVDGDGVRYGAGGGS
GLRAFGAGNTSPVPVWRMAPFDDTAVAAAETAAVAAAAALAKSAAPSASV
ASADTTAASDTATVAMAVVDVVATAAISATVATPARAVAMATSPAEAAAV
PRSHAAIGVA
back to top

mRNA from alignment at P-wetherbeei_contig525:3218..3719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig525.3.1 ID=mRNA_P-wetherbeei_contig525.3.1|Name=mRNA_P-wetherbeei_contig525.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig525:3218..3719+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCACGCCGCGCGGAACTGCGATGAAAAGCACGCCTCGCACAGCTATGT
TGACAGCGTCCCCTGCGGCGCGCAGTGTGGTGCAAAGTCGCAGCGACGGC
GCCGGCTGCGGCGGCGGCGATGATGCCGATGTGGATGGCGATGGCGTCCG
TTACGGAGCTGGCGGTGGCAGCGGCCTAAGGGCTTTCGGGGCTGGCAACA
CGTCTCCGGTACCTGTTTGGCGGATGGCACCCTTCGACGACACCGCAGTG
GCGGCAGCAGAGACCGCGGCCGTGGCGGCGGCGGCTGCGTTGGCAAAAAG
TGCCGCCCCCTCGGCATCAGTCGCTTCGGCAGATACAACAGCGGCATCTG
ACACAGCAACGGTGGCCATGGCGGTAGTAGATGTCGTGGCGACGGCGGCA
ATATCGGCGACGGTGGCGACACCGGCAAGGGCAGTGGCAATGGCCACGTC
GCCTGCTGAAGCCGCCGCTGTTCCGCGGTCTCACGCAGCAATAGGCGTGG
CG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig525:3218..3719+

>mRNA_P-wetherbeei_contig525.3.1 ID=mRNA_P-wetherbeei_contig525.3.1|Name=mRNA_P-wetherbeei_contig525.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig525:3218..3719+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGCACGCCTCGCACAGCTATGTTGACAGCGTCCCCTGCGGCGCG
CAGTGTGGTGCAAAGTCGCAGCGACGGCGCCGGCTGCGGCGGCGGCGATG
ATGCCGATGTGGATGGCGATGGCGTCCGTTACGGAGCTGGCGGTGGCAGC
GGCCTAAGGGCTTTCGGGGCTGGCAACACGTCTCCGGTACCTGTTTGGCG
GATGGCACCCTTCGACGACACCGCAGTGGCGGCAGCAGAGACCGCGGCCG
TGGCGGCGGCGGCTGCGTTGGCAAAAAGTGCCGCCCCCTCGGCATCAGTC
GCTTCGGCAGATACAACAGCGGCATCTGACACAGCAACGGTGGCCATGGC
GGTAGTAGATGTCGTGGCGACGGCGGCAATATCGGCGACGGTGGCGACAC
CGGCAAGGGCAGTGGCAATGGCCACGTCGCCTGCTGAAGCCGCCGCTGTT
CCGCGGTCTCACGCAGCAATAGGCGTGGCG
back to top