mRNA_P-wetherbeei_contig52460.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52460.1.1
Unique NamemRNA_P-wetherbeei_contig52460.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3D4C77 (squalene synthase HpnC n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D4C77)

HSP 1 Score: 274 bits (700), Expect = 3.890e-90
Identity = 132/182 (72.53%), Postives = 144/182 (79.12%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
            PR +R DMAT+Y FCR TDD+GDEG   P ERL ALD WE +LR A  G   G    A+A++I RR L L PF RLIEANRMDQRRSRWDT  ELLDYCRHSATPVGEMVLGVLGYRDRWRV +SD TC GLQLVNFWQDIARDLR+RDR+YLPR  M  FGV+EDDLRR AAT  +RALVA
Sbjct:   32 PRDVRDDMATVYAFCRATDDLGDEGPDGPGERLVALDRWEDELRRAAGGGAAGPLARAVADVIERRGLALDPFTRLIEANRMDQRRSRWDTHEELLDYCRHSATPVGEMVLGVLGYRDRWRVAMSDHTCVGLQLVNFWQDIARDLRERDRVYLPRAAMAAFGVTEDDLRRAAATPAVRALVA 213          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: UPI001C3E34B8 (squalene synthase HpnC n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E34B8)

HSP 1 Score: 268 bits (684), Expect = 1.010e-87
Identity = 127/182 (69.78%), Postives = 142/182 (78.02%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
            P  +R+DM  +Y FCRTTDD+GDEG   P  RLAALDAWE  LR A DG    A   A+AEL  RR +PL  F RL+EANRMDQRRSRWDT AEL+DYCRHSATPVGEMVLGVLGYRD WR GLSD TC GLQLVNFWQD+ RDLRDRDR+YLPR+ M   GV+ DDLR PAAT G+RA++A
Sbjct:   31 PADVRSDMGVVYAFCRTTDDLGDEGDGGPAARLAALDAWEADLRRAADGGEAPALPAAVAELADRRGIPLDVFTRLVEANRMDQRRSRWDTHAELIDYCRHSATPVGEMVLGVLGYRDAWRTGLSDETCIGLQLVNFWQDVGRDLRDRDRVYLPREAMEAHGVTVDDLRLPAATPGVRAVIA 212          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A6I4Z7V9_9CHLR (Squalene synthase HpnC n=5 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4Z7V9_9CHLR)

HSP 1 Score: 187 bits (476), Expect = 4.290e-56
Identity = 93/168 (55.36%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
            P+ +R     +Y FCR TDD+GDE      +RLA LD+WE  LR AV G+P    L ALA  I R+++PL PF+RLIEANRMDQR SR+ T  ++L YC +SATPVG+MVL VLGY D  RV LSD+TC GLQL NFWQD++ D+ ++ RIYLP + + RFGV E  +
Sbjct:   46 PKKLRRHFFAVYAFCRYTDDLGDEAEG---DRLALLDSWEQDLRDAVGGNPRRPLLIALARTIERKEIPLDPFLRLIEANRMDQRVSRFATYEDVLTYCSYSATPVGQMVLAVLGYTDAERVALSDQTCIGLQLANFWQDVSVDI-EKGRIYLPLEDLQRFGVDEQQI 209          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7Y5H7L8_9BACT (Squalene synthase HpnC n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5H7L8_9BACT)

HSP 1 Score: 183 bits (465), Expect = 1.310e-54
Identity = 92/174 (52.87%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL--RRPA 516
            P+ +R D   +Y FCRTTDD+GDE    P +RLAALD WE ++R A +G      L AL    R + L L PF+RLIEANRMDQR++RW + A+L  YC HSA PVG MVLG+ G  D  R  LSD  CTGLQL N WQD+ RD  ++ RIYLP + + R GV E D+  RRP+
Sbjct:   36 PKDLRRDFFAVYAFCRTTDDLGDEA---PGDRLAALDDWERRVRAAWEGGAREPILAALGRTAREKQLRLEPFLRLIEANRMDQRQTRWASGADLRRYCAHSADPVGRMVLGLFGQDDERRGALSDEICTGLQLANHWQDVGRDAVEKGRIYLPLEDLRRHGVPEADILARRPS 206          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7V8E861_9BACT (Squalene n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E861_9BACT)

HSP 1 Score: 182 bits (461), Expect = 4.830e-54
Identity = 92/168 (54.76%), Postives = 110/168 (65.48%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
            P+ +R D   +Y FCRTTDDIGDE +    +RLAALDAWE  +R    G+P    L ALA  IR R L   PF+RLIEANRMDQR+SRW+T  +L  YC HSA PVG MVLG+ G  D  R  LSD  CTGLQL N WQD+ RD  ++ RIYLP + +   GV E D+
Sbjct:   33 PKEMRRDFFAVYAFCRTTDDIGDEASG---DRLAALDAWEKDVRKCWGGEPAELMLVALARTIRERKLRQDPFLRLIEANRMDQRQSRWETWDDLRLYCAHSADPVGRMVLGLFGQDDAKRGPLSDAICTGLQLANHWQDVGRDAAEKGRIYLPLEDLEAHGVKEADV 197          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662EWW5_9BACT (Squalene synthase HpnC (Fragment) n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A662EWW5_9BACT)

HSP 1 Score: 182 bits (461), Expect = 6.410e-54
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALV 543
            PR +R  +A +Y FCRT DDIGDE    P +R+A LD +E +L+ A  G P    + AL + I   DLP  PF++LIEANR+DQR  R+    ELL YC HSA PVG + L + GYRD     LSD TCT LQL NFWQDI RD  +  RIYLP+D+M RFGVSE D+    A   +RALV
Sbjct:   45 PRRMRVHIAAVYAFCRTVDDIGDEA---PGDRIALLDRFEEELQSAYSGSPRHPVIVALKQTIAEFDLPAEPFLKLIEANRIDQRVHRYANFGELLHYCDHSANPVGRLFLMLYGYRDEELFRLSDNTCTALQLTNFWQDIRRDY-EMGRIYLPQDEMERFGVSESDIAATRANERVRALV 221          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A523Z022_9CHLR (Squalene synthase HpnC n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A523Z022_9CHLR)

HSP 1 Score: 181 bits (460), Expect = 1.410e-53
Identity = 92/168 (54.76%), Postives = 111/168 (66.07%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDL 504
            PR +R  M  +Y +CR  DD+GDE      +RLA LD W  ++R   DG P   A  AL E I R D+P  PF+RLIEANRMDQR +R+ T  ELL YC +SA PVG +VL + GYRD  R  LSD TCT LQL NFWQD+ RDL D+ RIY+P ++M RFG SE DL
Sbjct:   51 PRTLRPHMYAVYAYCRGVDDLGDEAEG---DRLALLDDWGAEVRRCYDGSPRHPAFVALRETIHRFDIPQEPFLRLIEANRMDQRVNRYRTYGELLGYCENSANPVGHLVLHLFGYRDEERQRLSDATCTALQLTNFWQDVRRDL-DKGRIYIPLEEMERFGYSEADL 214          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A7C2YGV9_9CHLR (Squalene synthase HpnC n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2YGV9_9CHLR)

HSP 1 Score: 179 bits (454), Expect = 5.800e-53
Identity = 92/182 (50.55%), Postives = 115/182 (63.19%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
            PR +R  M  +Y +CR  DD+GDE      +RLA LD WE +LR A +G        ALA  +R   +P  PF++LIEANRMDQR+ R+ T A+LL YC HSA PVG +VL + GYRDR R  LSD TCTGLQL NFWQD++RDL +  RIY+P + M  FG  E+DL         R L+A
Sbjct:   27 PRRLRPHMYVVYAYCRGVDDLGDEAEG---DRLALLDDWEAELRRAYEGKARHPVFVALAHTVREFRIPPEPFLKLIEANRMDQRQKRYPTYADLLRYCEHSANPVGHLVLYLFGYRDRERQRLSDATCTGLQLANFWQDVSRDL-EMGRIYIPLEDMAAFGYGEEDLLARICDERFRRLMA 204          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A2H5YDX8_9BACT (All-trans-phytoene synthase n=1 Tax=bacterium HR23 TaxID=2035418 RepID=A0A2H5YDX8_9BACT)

HSP 1 Score: 179 bits (454), Expect = 1.160e-52
Identity = 90/182 (49.45%), Postives = 115/182 (63.19%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
            PR     +  +Y FCRT DD+GDE +    +RLA LDAWE  LR    G P    L AL   IR  D+P+ PF++LIEANR+DQR SRW T  +LL YC HSA PVG + L + GYRD+ R  L+D TCT LQL NFWQD+ RD  ++ R+Y+P + M RFG +E++L R       R L+A
Sbjct:   49 PRDKLPHVCALYAFCRTVDDLGDEASG---DRLALLDAWEADLRLCYTGTPRHPYLKALQATIRAFDIPITPFLKLIEANRLDQRHSRWPTYQDLLFYCDHSANPVGHLFLYLFGYRDQERQRLADATCTALQLTNFWQDVRRDW-EKGRVYIPMEDMARFGYTEEELARGVVNDAFRRLMA 226          
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Match: A0A662L287_9ARCH (Squalene synthase HpnC n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A662L287_9ARCH)

HSP 1 Score: 178 bits (452), Expect = 1.860e-52
Identity = 94/182 (51.65%), Postives = 115/182 (63.19%), Query Frame = 1
Query:    1 PRAIRADMATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALGALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVGEMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQMLRFGVSEDDLRRPAATAGLRALVA 546
            PR +R  + ++Y F RTTDD+GDE    P +RLA LD WE +L  A  G      + AL E  R  DLP+ PF ++I+ANRMDQR +R+ T  ELL YC HSA PVG + L + GYRD     LSD+TCT LQL NFWQD+ARDL    RIY+P + M  FG SEDDLRR       R L+A
Sbjct:   45 PRRLRKHIFSLYGFFRTTDDLGDEA---PGDRLALLDRWEEELEAAFQGKARHPVMVALGETAREFDLPIEPFRKIIQANRMDQRTNRYRTFDELLHYCDHSANPVGRLYLMLFGYRDEELFRLSDKTCTALQLANFWQDVARDLAC-GRIYIPLEDMDAFGYSEDDLRRKVVDGRFRKLMA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52460.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D4C773.890e-9072.53squalene synthase HpnC n=1 Tax=Miltoncostaea marin... [more]
UPI001C3E34B81.010e-8769.78squalene synthase HpnC n=1 Tax=Miltoncostaea ocean... [more]
A0A6I4Z7V9_9CHLR4.290e-5655.36Squalene synthase HpnC n=5 Tax=Dehalococcoidia bac... [more]
A0A7Y5H7L8_9BACT1.310e-5452.87Squalene synthase HpnC n=1 Tax=Candidatus Brocadia... [more]
A0A7V8E861_9BACT4.830e-5454.76Squalene n=1 Tax=Planctomycetes bacterium TaxID=20... [more]
A0A662EWW5_9BACT6.410e-5452.49Squalene synthase HpnC (Fragment) n=1 Tax=Candidat... [more]
A0A523Z022_9CHLR1.410e-5354.76Squalene synthase HpnC n=1 Tax=Dehalococcoidia bac... [more]
A0A7C2YGV9_9CHLR5.800e-5350.55Squalene synthase HpnC n=1 Tax=Chloroflexi bacteri... [more]
A0A2H5YDX8_9BACT1.160e-5249.45All-trans-phytoene synthase n=1 Tax=bacterium HR23... [more]
A0A662L287_9ARCH1.860e-5251.65Squalene synthase HpnC n=1 Tax=Thermoplasmata arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52460contigP-wetherbeei_contig52460:1..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1048834.TC41_2732
Preferred namehpnC
PFAMsSQS_PSY
Model size546
Max annot lvl2|Bacteria
KEGG rclassRC00362,RC01101,RC02869
KEGG koko:K02291,ko:K21679
KEGG ReactionR02065,R04218,R07270,R10177
KEGG Pathwayko00906,ko01062,ko01100,ko01110,map00906,map01062,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.38e-47
EggNOG OGsCOG1562@1|root,COG1562@2|Bacteria
EC2.5.1.32,2.5.1.99,4.2.3.156
Descriptionergosterol biosynthetic process
Cds size525
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01006
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.9615712-UTR-P-wetherbeei_contig52460:0..211683186785.9615712-UTR-P-wetherbeei_contig52460:0..21Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52460 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.971345-CDS-P-wetherbeei_contig52460:21..5461683186785.971345-CDS-P-wetherbeei_contig52460:21..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52460 22..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52460.1.1prot_P-wetherbeei_contig52460.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52460 22..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52460.1.1

>prot_P-wetherbeei_contig52460.1.1 ID=prot_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
MATIYRFCRTTDDIGDEGAAPPQERLAALDAWEHQLRHAVDGDPGGAALG
ALAELIRRRDLPLAPFVRLIEANRMDQRRSRWDTSAELLDYCRHSATPVG
EMVLGVLGYRDRWRVGLSDRTCTGLQLVNFWQDIARDLRDRDRIYLPRDQ
MLRFGVSEDDLRRPAATAGLRALVA
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mRNA from alignment at P-wetherbeei_contig52460:1..546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52460.1.1 ID=mRNA_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig52460:1..546+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCGCGATCCGTGCCGACATGGCGACGATCTACCGGTTCTGTCGCAC CACCGACGACATCGGCGACGAGGGCGCCGCGCCGCCGCAAGAGCGCCTCG CGGCCCTCGATGCCTGGGAGCACCAGTTGCGGCACGCCGTGGACGGTGAC CCGGGGGGGGCCGCGCTCGGTGCACTGGCGGAGCTGATCCGCCGTCGCGA CCTCCCTCTGGCCCCCTTCGTGCGCCTGATCGAAGCGAACCGGATGGACC AGCGCCGCTCGCGATGGGACACGTCCGCCGAGCTGCTCGACTACTGCCGC CACTCGGCGACCCCGGTCGGGGAGATGGTGCTCGGCGTGCTGGGGTACCG CGACCGGTGGCGCGTCGGGCTGAGCGATCGCACCTGCACCGGGCTCCAGC TCGTCAACTTCTGGCAGGACATCGCCCGCGACCTGCGCGACCGCGATCGG ATCTACCTGCCCCGCGACCAGATGCTGCGCTTCGGCGTGTCGGAGGACGA TCTGCGCCGGCCGGCCGCGACGGCCGGGCTGCGGGCGCTTGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52460:1..546+

>mRNA_P-wetherbeei_contig52460.1.1 ID=mRNA_P-wetherbeei_contig52460.1.1|Name=mRNA_P-wetherbeei_contig52460.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig52460:1..546+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGATCTACCGGTTCTGTCGCACCACCGACGACATCGGCGACGA
GGGCGCCGCGCCGCCGCAAGAGCGCCTCGCGGCCCTCGATGCCTGGGAGC
ACCAGTTGCGGCACGCCGTGGACGGTGACCCGGGGGGGGCCGCGCTCGGT
GCACTGGCGGAGCTGATCCGCCGTCGCGACCTCCCTCTGGCCCCCTTCGT
GCGCCTGATCGAAGCGAACCGGATGGACCAGCGCCGCTCGCGATGGGACA
CGTCCGCCGAGCTGCTCGACTACTGCCGCCACTCGGCGACCCCGGTCGGG
GAGATGGTGCTCGGCGTGCTGGGGTACCGCGACCGGTGGCGCGTCGGGCT
GAGCGATCGCACCTGCACCGGGCTCCAGCTCGTCAACTTCTGGCAGGACA
TCGCCCGCGACCTGCGCGACCGCGATCGGATCTACCTGCCCCGCGACCAG
ATGCTGCGCTTCGGCGTGTCGGAGGACGATCTGCGCCGGCCGGCCGCGAC
GGCCGGGCTGCGGGCGCTTGTGGCC
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