mRNA_P-wetherbeei_contig52459.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52459.1.1
Unique NamemRNA_P-wetherbeei_contig52459.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A7V8ZRN4_9BURK (PAS domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V8ZRN4_9BURK)

HSP 1 Score: 213 bits (542), Expect = 4.310e-67
Identity = 97/154 (62.99%), Postives = 114/154 (74.03%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTR 462
            EWNL      FSPRWK MLG+AE E+ + +D WR RIHP D E  +  LQ HL+G+T RFENEHRL H+DG +RW+LARG AVR ASGK YR++ LHTD++ RK   EAL D+ADGL    GE+CF+ LTR FA VLGVREAFVCEC N PTTR
Sbjct:    3 EWNLKTGDAWFSPRWKGMLGFAEDEISERIDNWRGRIHPDDREHTLAGLQTHLDGRTPRFENEHRLRHKDGSWRWVLARGCAVRNASGKPYRLLALHTDVTSRKRAHEALADIADGLPAAGGEQCFQVLTRNFAAVLGVREAFVCECMNYPTTR 156          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A848F9C7_9BURK (PAS domain-containing protein n=1 Tax=Azohydromonas caseinilytica TaxID=2728836 RepID=A0A848F9C7_9BURK)

HSP 1 Score: 181 bits (458), Expect = 1.780e-52
Identity = 92/181 (50.83%), Postives = 117/181 (64.64%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACEE 543
            EW++  D +  SPRWKSMLG+AEHELG+   +WR RIHPQD+  +   LQ HL    ARF+ E RLLH+DG  RW+L+RG A+R ASG  YRMVGL TD++  K V+  L  VA G +   GE  F+ L R FA+ L V  AF+ EC++QP TRVR LA W    +    E+ L GT CE+
Sbjct:  112 EWDIAADRMRLSPRWKSMLGFAEHELGEARAQWRERIHPQDLPALEQALQRHLADAQARFQCELRLLHKDGSLRWVLSRGVALRHASGTPYRMVGLDTDVTPLKRVETILDAVARGTADAFGEAFFKALVRHFARALEVDCAFITECADQPPTRVRTLAFWAGQRWQDNIEYGLPGTPCEQ 292          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: UPI00145DF7EB (PAS domain-containing protein n=1 Tax=Aromatoleum anaerobium TaxID=182180 RepID=UPI00145DF7EB)

HSP 1 Score: 180 bits (457), Expect = 4.860e-52
Identity = 89/180 (49.44%), Postives = 120/180 (66.67%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            E +L N  +  SPRWKS+LGYA+ E  + ++ WR  +HP D +     L AHLEG T R+E + RLLH+DG+YRW+L+RG+AVR A+G+AYR++GL TDI+  K V+  L  V +G +   GE+ FR L R FA  L V  AF+ EC++QP TRVR LA W+   F    E++LAGT CE
Sbjct:  143 ERDLDNARLILSPRWKSLLGYADDEFPNAIEAWREHVHPDDRDGAEAALAAHLEGATPRYERQLRLLHKDGRYRWMLSRGSAVRHANGRAYRIIGLDTDITAIKRVEYVLQQVVEGTAGTYGEDFFRCLVRHFAAALEVSCAFITECTDQPPTRVRTLAFWSASSFLDSLEYELAGTPCE 322          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A1A8XQ06_9PROT (PAS/PAC domain-containing protein n=1 Tax=Candidatus Accumulibacter aalborgensis TaxID=1860102 RepID=A0A1A8XQ06_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.030e-50
Identity = 85/180 (47.22%), Postives = 115/180 (63.89%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            EWN L+  +  SPRWKSMLG+A+ E     + WR RIHP D+ RV   L+AHLEG    +E + R+ HRDG  RWIL+RG A+R ASGK YR+VGL TD++  + ++  L ++ +G++   GE  F  L + FAQ L V  AF+ EC++ PT+R R LA W+   F    E+DL GT CE
Sbjct:   32 EWNRLSGEMLLSPRWKSMLGFADSEWLGSRERWRERIHPADLPRVEAALKAHLEGSGEPYEEQLRMRHRDGGTRWILSRGTAIRHASGKPYRVVGLDTDVTRIRRIETILNEIVEGIAGAVGEAFFHTLVQHFAQALQVSCAFITECADYPTSRQRTLAFWSDSAFREDIEYDLPGTPCE 211          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A4U1KI65_9GAMM (PAS domain S-box protein n=8 Tax=Azotobacter chroococcum TaxID=353 RepID=A0A4U1KI65_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 1.130e-50
Identity = 87/180 (48.33%), Postives = 120/180 (66.67%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            E +L N  +  S RWKSMLGYAE +  D ++ WR  +HPQD+  V   L +HL+G   R+E ++R+ H+DG+YRW+L+RG A+R A+G+AYRMVGL TD+S  K V+  L +V +G +   GE+ F+ L + FA  L V  AF+ EC++QP TRVR LA W+ D F    E+DL GT CE
Sbjct:  131 ERDLDNGRLVLSARWKSMLGYAEEDFPDRLEVWREHVHPQDLIAVEIALDSHLQGALPRYECQYRVRHKDGRYRWLLSRGCALRHANGRAYRMVGLDTDVSPIKRVEHILEEVVEGTAGSYGEDFFQRLVQHFAGALEVSCAFITECADQPPTRVRTLAFWSDDRFLDNLEYDLPGTPCE 310          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: UPI001EE4B3B3 (PAS domain-containing protein n=1 Tax=Azohydromonas lata TaxID=45677 RepID=UPI001EE4B3B3)

HSP 1 Score: 175 bits (443), Expect = 1.250e-50
Identity = 90/181 (49.72%), Postives = 113/181 (62.43%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACEE 543
            EW++  D +  SPRWKSMLGYAE ELGD  ++WR  +  QD+  +   LQAHL    +RFE E RL H+DG  RW+L RG A+R ASG  YRMVGL TD++  K V+  L  VA G +   GE  F+ L R FA+ L V  AF+ EC++QP TRVR LA W    F    E+ L GT CE+
Sbjct:   69 EWDIAADRMRLSPRWKSMLGYAEDELGDSRNQWRACVEAQDLPALEQALQAHLADAASRFEGELRLKHKDGTLRWVLTRGVALRHASGTPYRMVGLDTDVTRLKRVETILDAVARGTADAFGEAFFKALVRHFARALEVDCAFITECADQPPTRVRTLAFWAGQRFEDNIEYGLPGTPCEQ 249          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A011PTP9_9PROT (Putative diguanylate cyclase n=1 Tax=Candidatus Accumulibacter sp. BA-94 TaxID=1454005 RepID=A0A011PTP9_9PROT)

HSP 1 Score: 177 bits (448), Expect = 1.840e-50
Identity = 87/180 (48.33%), Postives = 119/180 (66.11%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            EWNL    +  SPRWKSMLG+A+ +  D  ++WR RIH  D+  V   LQA++EG    +E ++R+LHRDG  RWIL+RG AVR ASGKAYRMVGL TD++  K  +  L ++A+G +  +GE  +R L + FA  L V  AF+ +C++ PT+R+R LA W+  GF    E+DL GT CE
Sbjct:  149 EWNLATGEMLLSPRWKSMLGFADSDFPDCREQWRERIHAADLTAVEAALQANIEGAGEPYEQQYRMLHRDGGTRWILSRGTAVRHASGKAYRMVGLDTDVTRIKRFETILNEMAEGTAGAAGEAFYRTLVQHFACALQVSCAFITQCADYPTSRLRTLAFWSDHGFLDDFEYDLPGTPCE 328          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: UPI00129D8F08 (PAS domain-containing protein n=3 Tax=Cupriavidus TaxID=106589 RepID=UPI00129D8F08)

HSP 1 Score: 176 bits (446), Expect = 2.620e-50
Identity = 84/180 (46.67%), Postives = 115/180 (63.89%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            EWN   +  H S RWK+MLG+ E+E+ D +  W+ R+HP D+  V   L  H+EG + R++ + RLLH+DGQYRW+ + G+A+R A+GKA R+VGL TD++  K V++ L  + +G +   G+E FR L R FA  L V  AFV EC+  P  RV  LA W KD F    E+DLAGT CE
Sbjct:  147 EWNFQTNQFHLSQRWKAMLGFEENEIPDSLQAWKERVHPADLLAVEQALARHIEGASPRYQQQCRLLHKDGQYRWVNSLGSAIRHANGKALRLVGLDTDVTRIKRVEDILRHIVEGTAGTCGDEFFRALVRHFAAALDVPCAFVTECTGWPPRRVHTLAFWFKDDFRDNVEYDLAGTPCE 326          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: A0A080M0P0_9PROT (Putative diguanylate cyclase n=5 Tax=Candidatus Accumulibacter TaxID=327159 RepID=A0A080M0P0_9PROT)

HSP 1 Score: 175 bits (444), Expect = 7.180e-50
Identity = 87/180 (48.33%), Postives = 119/180 (66.11%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACE 540
            EWNL +  +  SPRWKSMLG+A+ +L D  ++WR RIH  D+  V   LQA+LE     +E ++R+LHRDG  RWIL+RG  VR ASGKAYRMVGL TDI+  K  +  L ++A+G +  +G+  +R L + FA  L V  AF+ EC++ PT+R+R LA W++  F    E+DL GT CE
Sbjct:  149 EWNLASGEMLLSPRWKSMLGFADSDLPDCREQWRERIHAADLATVEAALQANLESAGEPYEQQYRMLHRDGSTRWILSRGTVVRHASGKAYRMVGLDTDITRIKRFETILNEMAEGTAGAAGDAFYRTLVQHFACALQVACAFITECADYPTSRLRTLAFWSEHAFLDDFEYDLPGTPCE 328          
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Match: UPI000A004C54 (PAS domain-containing protein n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI000A004C54)

HSP 1 Score: 174 bits (440), Expect = 8.830e-50
Identity = 91/181 (50.28%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    1 EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQAHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDISGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQPTTRVRMLARWNKDGFARCEEFDLAGTACEE 543
            EW+L  D +  SPRWKSMLGYAE ELGD   +WR  + PQD+  +   LQ HL     RFE E RL H+DG  RW+L RG A+R ASG  YRMVGL TD++  K V+  L  VA G +   GE  FR L R FA+ L V  AF+ EC++QP TRVR LA W    +    E+ L GT CE+
Sbjct:  112 EWDLGADRMRLSPRWKSMLGYAEDELGDSRAQWRGCVEPQDLPALEQALQRHLADAQCRFEGELRLKHKDGSLRWVLTRGVALRHASGTPYRMVGLDTDVTRLKRVETILDAVARGTADAFGEAFFRALVRHFARALEVECAFITECADQPPTRVRTLACWAGQQWQDNVEYGLPGTPCEQ 292          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V8ZRN4_9BURK4.310e-6762.99PAS domain-containing protein n=1 Tax=Burkholderia... [more]
A0A848F9C7_9BURK1.780e-5250.83PAS domain-containing protein n=1 Tax=Azohydromona... [more]
UPI00145DF7EB4.860e-5249.44PAS domain-containing protein n=1 Tax=Aromatoleum ... [more]
A0A1A8XQ06_9PROT1.030e-5047.22PAS/PAC domain-containing protein n=1 Tax=Candidat... [more]
A0A4U1KI65_9GAMM1.130e-5048.33PAS domain S-box protein n=8 Tax=Azotobacter chroo... [more]
UPI001EE4B3B31.250e-5049.72PAS domain-containing protein n=1 Tax=Azohydromona... [more]
A0A011PTP9_9PROT1.840e-5048.33Putative diguanylate cyclase n=1 Tax=Candidatus Ac... [more]
UPI00129D8F082.620e-5046.67PAS domain-containing protein n=3 Tax=Cupriavidus ... [more]
A0A080M0P0_9PROT7.180e-5048.33Putative diguanylate cyclase n=5 Tax=Candidatus Ac... [more]
UPI000A004C548.830e-5050.28PAS domain-containing protein n=1 Tax=Azohydromona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52459contigP-wetherbeei_contig52459:3..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog381666.H16_A1822
PFAMsGGDEF,PAS,PAS_3,PAS_4
Model size543
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.72e-50
EggNOG OGsCOG2203@1|root,COG5001@1|root,COG2203@2|Bacteria,COG5001@2|Bacteria,1MU2C@1224|Proteobacteria
DescriptionDiguanylate cyclase
Cds size543
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.8861513-CDS-P-wetherbeei_contig52459:2..5451683186785.8861513-CDS-P-wetherbeei_contig52459:2..545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52459 3..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52459.1.1prot_P-wetherbeei_contig52459.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52459 3..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52459.1.1

>prot_P-wetherbeei_contig52459.1.1 ID=prot_P-wetherbeei_contig52459.1.1|Name=mRNA_P-wetherbeei_contig52459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
EWNLLNDAVHFSPRWKSMLGYAEHELGDHMDEWRTRIHPQDVERVVGELQ
AHLEGKTARFENEHRLLHRDGQYRWILARGAAVRTASGKAYRMVGLHTDI
SGRKLVQEALLDVADGLSTLSGEECFRELTRRFAQVLGVREAFVCECSNQ
PTTRVRMLARWNKDGFARCEEFDLAGTACEE
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mRNA from alignment at P-wetherbeei_contig52459:3..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52459.1.1 ID=mRNA_P-wetherbeei_contig52459.1.1|Name=mRNA_P-wetherbeei_contig52459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52459:3..545- (Phaeothamnion wetherbeei SAG_119_79)
GAGTGGAATCTGCTCAACGATGCGGTGCATTTTTCGCCACGCTGGAAAAG CATGCTCGGCTACGCGGAACATGAGCTGGGCGACCACATGGACGAATGGC GTACGCGAATCCATCCCCAGGACGTCGAGCGCGTCGTTGGCGAACTGCAG GCCCACCTTGAGGGCAAGACCGCCCGATTCGAAAATGAGCACCGGCTGCT GCACCGCGACGGCCAGTATCGATGGATTCTCGCGCGCGGCGCCGCGGTGC GCACGGCGAGCGGCAAAGCCTATCGCATGGTCGGACTGCACACCGACATT TCAGGGCGCAAGCTAGTCCAGGAAGCGTTGCTCGACGTGGCAGATGGCTT GTCCACGCTTTCGGGAGAAGAATGCTTTCGCGAACTGACCCGGCGTTTCG CGCAGGTTCTTGGCGTTCGCGAAGCCTTTGTCTGCGAATGCAGCAACCAG CCGACCACCAGGGTGCGTATGCTCGCGCGCTGGAACAAGGATGGTTTCGC CCGCTGCGAGGAATTCGATCTGGCCGGAACAGCATGCGAAGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52459:3..545-

>mRNA_P-wetherbeei_contig52459.1.1 ID=mRNA_P-wetherbeei_contig52459.1.1|Name=mRNA_P-wetherbeei_contig52459.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52459:3..545- (Phaeothamnion wetherbeei SAG_119_79)
GAGTGGAATCTGCTCAACGATGCGGTGCATTTTTCGCCACGCTGGAAAAG
CATGCTCGGCTACGCGGAACATGAGCTGGGCGACCACATGGACGAATGGC
GTACGCGAATCCATCCCCAGGACGTCGAGCGCGTCGTTGGCGAACTGCAG
GCCCACCTTGAGGGCAAGACCGCCCGATTCGAAAATGAGCACCGGCTGCT
GCACCGCGACGGCCAGTATCGATGGATTCTCGCGCGCGGCGCCGCGGTGC
GCACGGCGAGCGGCAAAGCCTATCGCATGGTCGGACTGCACACCGACATT
TCAGGGCGCAAGCTAGTCCAGGAAGCGTTGCTCGACGTGGCAGATGGCTT
GTCCACGCTTTCGGGAGAAGAATGCTTTCGCGAACTGACCCGGCGTTTCG
CGCAGGTTCTTGGCGTTCGCGAAGCCTTTGTCTGCGAATGCAGCAACCAG
CCGACCACCAGGGTGCGTATGCTCGCGCGCTGGAACAAGGATGGTTTCGC
CCGCTGCGAGGAATTCGATCTGGCCGGAACAGCATGCGAAGAA
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