mRNA_P-wetherbeei_contig5245.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5245.1.1
Unique NamemRNA_P-wetherbeei_contig5245.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A835Z8N4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N4_9STRA)

HSP 1 Score: 352 bits (903), Expect = 1.510e-117
Identity = 185/297 (62.29%), Postives = 211/297 (71.04%), Query Frame = 1
Query:    7 LQMKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQGGYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLA------------------------APCTDPGTVGHVPGPGGAPXXXXNIGAGETPTAADAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTPRVTGRGRYYKNVRREWA 825
            + +KVRLSFRTDIGGM ENQD+CFVWRH  SGS+VIGVLDGHGRDVG+LA+  VK FM  WL R W  V+A+PAEAFR+MFAEAH SML AF++HL A+GW VKE GGYL+KRRS++ PW+CVHGGTSGSVVA+VEGRR+L ANVGDS+ LLA                        APCT+PGTVG    P GA                     AD QTL+LTADHSPES RE+ RMR +HP P +   P+L VVYDSPTP KL+C PVFELDA G P VTGRGRYYKNVRREWA
Sbjct:    1 MSVKVRLSFRTDIGGMSENQDECFVWRHEPSGSLVIGVLDGHGRDVGRLAAVHVKGFMQDWLTRYWSAVIANPAEAFRIMFAEAHASMLTAFQQHLIAEGWTVKEAGGYLVKRRSMSCPWSCVHGGTSGSVVALVEGRRILVANVGDSAALLAMRGRALHQADLIQHSLWPEGGGVMAPCTEPGTVGDATMPTGA--------------------FAD-QTLILTADHSPESVREYMRMRASHPHPHDVHAPHLAVVYDSPTPNKLRCQPVFELDAHGRPCVTGRGRYYKNVRREWA 276          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: D7FNA2_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA2_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 3.060e-60
Identity = 99/153 (64.71%), Postives = 114/153 (74.51%), Query Frame = 1
Query:    7 LQMKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQGGYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLA 465
            +QMKVRLSFRTDIGGM ENQD+CF+WRH  SGS VIGVLDGHGRDVG+LA+  V+EFM  WL+RRWGEV  +PAEAFR +F E                     + GGYLMKRRS+ QPW+CVHGGTS ++VA+VEGR L TANVGDSS LLA
Sbjct:  107 MQMKVRLSFRTDIGGMSENQDNCFIWRHEPSGSFVIGVLDGHGRDVGRLAAHVVQEFMQDWLSRRWGEVKENPAEAFRTLFRE---------------------DNGGYLMKRRSMTQPWSCVHGGTSATLVALVEGRTLYTANVGDSSALLA 238          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A7S1U2X5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2X5_9STRA)

HSP 1 Score: 200 bits (509), Expect = 8.730e-58
Identity = 119/274 (43.43%), Postives = 158/274 (57.66%), Query Frame = 1
Query:   13 MKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEV-LADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTDPGTVGHVPGPGGAPXXXXNIGAGETPT-AADAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTPRVTGRGRYYKNVRREWA 825
            MK+  S  TDIGGM ENQDD ++W  P  G VV+ V DGHGR+VG++A+   + F+  WL   + +    D   AFR MFA A+ ++   FR H   +G  ++E   GYL+KRR    PW CV GG+S S + ++   ++LTANVGDSS LLA+      T G + G           G  +  + AAD     + + L+LTADHSPES  EF RM  +HPS      P + +VYD+  P K  C  +FEL A G P VT  GRY+KNVR+EWA
Sbjct:   52 MKITASTETDIGGMRENQDDVYIWEDPGGGGVVLCVFDGHGREVGRVAANAARAFLETWLVENFQQFRTGDQVAAFRSMFAGANSAVKARFRAHYEERGEEIEEAPEGYLLKRRKNYGPWLCVFGGSSFSCICILPD-KILTANVGDSSALLAS------THGSLRGVTATRVADLAEGVTDNGSLAADLIVEDNERVLMLTADHSPESPNEFNRMTASHPSRDGGHRPRMQMVYDNIGPDKSSCPQIFELGADGQPSVTSNGRYWKNVRQEWA 318          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A6C0I0V0_9ZZZZ (PPM-type phosphatase domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0I0V0_9ZZZZ)

HSP 1 Score: 197 bits (502), Expect = 1.750e-56
Identity = 120/278 (43.17%), Postives = 160/278 (57.55%), Query Frame = 1
Query:   16 KVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKE--QGGYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAA--PCTDPGTVGHVPGPGGAPXXXXNIGAGETPTAA-DAAATADVQT---LLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTPRVTGRGRYYKNVRREWA 825
            K  + F TDIGG  ENQD+CFVW HP+    V+ VLDGHGR+VG++A+   K  +L +    + E+ +DP +        A   +   F+  L +QG+ V E  Q  YL+KRRS  Q W CVHGGTS S+VA+V G  L  ANVGDS+ +L +  P      + +V           NI   E   A  DA  +AD      +++T +HSPES  EF R+R       +P+ P LLVVYDSP+  K+ C PVF+L   G PRVT +G+YYKNVR+EWA
Sbjct:   36 KKNIGFETDIGGGRENQDECFVWSHPTEKLCVLCVLDGHGREVGRIAAVAAKGRLLRFFEENFTELASDPVQTLIKAHELAQDHIKATFKSELESQGFQVMEDPQAPYLLKRRSSVQVWACVHGGTSCSIVALV-GSTLYIANVGDSTGMLCSTIPSLSRSMIDYV-----RDSAIDNIEKHEAKVAEIDAELSADTTLSGEIIITREHSPESPEEFERLRDFKQRDDDPKQPALLVVYDSPSVDKIHCPPVFDLSLEGIPRVTNKGKYYKNVRKEWA 307          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A7R9U469_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U469_9STRA)

HSP 1 Score: 192 bits (489), Expect = 7.390e-55
Identity = 115/278 (41.37%), Postives = 162/278 (58.27%), Query Frame = 1
Query:    7 LQMKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEVL-ADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTDPGTVGHVPGPGGAPXXXXNIGAGETPTA---ADAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTPRVTGRGRYYKNVRREWA 825
            L +++  S  TDIGGM ENQDD ++W+ P+   VV+ V DGHGR+VG++A+   + F+  WL   + E+   +  EAFR MF  A+ ++   FR H  + G  ++E   G+L+KRR    PW CV GG+S S V ++E  R+LTANVGDSS L+A  CT      H    G A     ++  G        A+     + + ++LTADHSPES  EF RM+ +HP   N + P + +VYD+  P K  C+ +F L   G P VT  GRY+KNVR+EWA
Sbjct:   51 LALRITCSAETDIGGMRENQDDVYIWKDPAGRGVVLCVFDGHGREVGKVAANAARGFLERWLEENFVEICDGNEIEAFRSMFRGANEAVKSQFRCHYESLGDEIEEAPEGFLLKRRRSYGPWLCVFGGSSFSCVCILED-RILTANVGDSSALMA--CT------HGSMRGVAKFRVADLAEGVAENGRIPAELIVENNDRVVMLTADHSPESPHEFNRMKTSHPHHENEKKPRMQMVYDNIGPDKSNCSEIFRLGDDGQPIVTSNGRYWKNVRQEWA 319          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A7S1U505_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U505_9STRA)

HSP 1 Score: 176 bits (446), Expect = 4.260e-50
Identity = 108/259 (41.70%), Postives = 145/259 (55.98%), Query Frame = 1
Query:   13 MKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEV-LADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTDPGTVGHVPGPGGAPXXXXNIGAGETPT-AADAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTPRV 780
            MK+  S  TDIGGM ENQDD ++W  P  G VV+ V DGHGR+VG++A+   + F+  WL   + +    D   AFR MFA A+ ++   FR H   +G  ++E   GYL+KRR    PW CV GG+S S + ++   ++LTANVGDSS LLA+      T G + G           G  +  + AAD     + + L+LTADHSPES  EF RM  +HPS      P + +VYD+  P K  C  +FEL A G P V
Sbjct:   52 MKITASTETDIGGMRENQDDVYIWEDPGGGGVVLCVFDGHGREVGRVAANAARAFLETWLVENFQQFRTGDQVAAFRSMFAGANSAVKARFRAHYEERGEEIEEAPEGYLLKRRKNYGPWLCVFGGSSFSCICILPD-KILTANVGDSSALLAS------THGSLRGVTATRVADLAEGVTDNGSLAADLIVEDNERVLMLTADHSPESPNEFNRMTASHPSRDGGHRPRMQMVYDNIGPDKSSCPQIFELGADGQPSV 303          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A812VXF9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VXF9_9DINO)

HSP 1 Score: 177 bits (448), Expect = 2.330e-48
Identity = 120/300 (40.00%), Postives = 158/300 (52.67%), Query Frame = 1
Query:   16 KVRLSFRTDIGGMHEN-QDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTD--------------------PGTVGHVPGPGGAPXXXXNIGA-GETPTAA---DAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFEL--DASGTPRVT--GRGRYYKNVRREWA 825
            +VRL   TD G   +N QDD FVW      + ++GVLDGHGRD+G LA+   K  + A L+  + ++ ADP       F  AH+++  +F+E   + GW V E+  GYL+++R      TC+HGGT+G+VV VV+GR ++ ANVGDSS LL     D                    PG+    PG           G+ GE   AA      +TA      L+ DH PE   EF RMR   P+P  P VP L  VYD+ T  KLKC P+F++  D +G   VT  GRG YYKNVR EWA
Sbjct:   58 EVRLGGLTDPGVPGKNNQDDFFVWDSGDGQNFILGVLDGHGRDLGSLAANVAKRSLQAELSAGFDKIRADPHTTLVTAFENAHLAVKQSFKEFYESAGWVVTEEPEGYLVRQRPSGGGKTCIHGGTTGTVVVVVDGRYVVVANVGDSSILLCGSGGDVVMQPMATWTPRGALSLQQVPGSSKLAPGAPSTSLRHPVTGSRGELSIAAADFSLKSTAPAACSELSKDHGPECASEFLRMRDFRPNPGKPSVPALSFVYDTLTASKLKCPPIFDVATDTTGKEVVTRTGRGTYYKNVRNEWA 357          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A7S2CW64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CW64_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.030e-46
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = 1
Query:   13 MKVRLSFRTDIGGMHENQDDCFVWRHPS-SGSVVIGVLDGHGRDVGQLASACVKEFMLAWL--ARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLL 462
            ++VRL   TDIGG  ENQD  F W  P+ SGS V GVLDGHGR+VG+LA+   ++ +LAWL  A     +  +P E F +MFA AH  +  AFRE LT+ GW V++   GYL+KRR   QPW CVHGGTS SV+A+++G+RL+TANVGDSS LL
Sbjct:   38 VQVRLGGATDIGGGRENQDTWFSWTDPAGSGSTVFGVLDGHGREVGKLAATAGRDGILAWLDDAANMESLRLNPTEGFAIMFAHAHSCVKEAFRESLTSAGWTVEDTPEGYLLKRRQAMQPWQCVHGGTSCSVLALIDGQRLVTANVGDSSALL 191          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A5A8D505_CAFRO (PPM-type phosphatase domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D505_CAFRO)

HSP 1 Score: 159 bits (402), Expect = 6.060e-42
Identity = 110/273 (40.29%), Postives = 142/273 (52.01%), Query Frame = 1
Query:   49 GMH--ENQDDCFVWR-HPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGE--VLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG-GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTDPGTVGHV-------PGPGGAPXXXXNIGAGETPTAADAAATADVQTLLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDAS-GTPRVTGRGRYYKNVRREWA 825
            G+H  +NQDD FV     ++G  ++GV DGHGR++GQLA+   K F+   L +      +  DP + F  +F  AH ++   F  H T  GW V     G+L +RRS      CVHGGT+ +V+ +  GRR + ANVGDSS LL   C    T  HV       PG   AP       A      A+    A    + ++ADHSPES  EF RMR   PS  +   P LL VYD+ T  K+ C  +F +D S G  R T RG YYKNVR EWA
Sbjct:   57 GVHGKQNQDDFFVEVIDAAAGDCIVGVFDGHGRELGQLAARTAKNFVRDELRKEEVRKAIERDPKDTFDAVFCGAHKAIEATFAAHYTDAGWLVSRAAEGFLTRRRSEGSATMCVHGGTTATVMVIYGGRRAVVANVGDSSALL---CGGHATA-HVMRAISTWPGSATAPAEAAPASAVVARPEANPEHAAGPTQMEMSADHSPESDAEFFRMRDARPSLTDKSRPELLFVYDTLTSSKMSCPQIFHVDPSTGRARRTNRGSYYKNVRNEWA 325          
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Match: A0A1V9Z544_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z544_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.750e-38
Identity = 101/292 (34.59%), Postives = 146/292 (50.00%), Query Frame = 1
Query:    1 RALQMKVRLSFRTDIGGMHEN-QDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASACVKEFMLAWLARRWGE------VLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWAVKEQG----GYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLLAAPCTDPGTVGHVPGPGGAPXXXXNIGAGETPTAADAAATADVQT-----LLLTADHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDASGTP-RVTGRGRYYKNVRREWA 825
            + L + +  S  TDIG        D ++ +    G++V+GV DGHG++ G +A+   K F    +A+ + +      + A P    R +F   H  +LH F+ H  +QG   K++G     +L+KR++   P+TCV GGT+ +V  ++ G RL+ ANVGDS+ LLA   T    V  VP           + A     A  A AT D         LL+ DHS ES  EF R+R +H        P L  ++D+PTP + +  P+F   A G   R T  GRYYKNVR EWA
Sbjct:   23 KGLSVTIAASGTTDIGSARATVNQDTYLVQDLGEGNLVLGVFDGHGKETGHVAAHAAKAF----IAKHFSDPSALLRLEAAPEAELRALFRSCHAHLLHVFKAHYASQGACTKDEGHDGSAFLLKRKATTMPFTCVQGGTTATVAVLLRGTRLVVANVGDSTALLAGTAT----VSCVP-----------LTATADAPAFCAHATGDANNDAPTYTLLSGDHSAESAAEFARVRRSH-------APGLQFLFDTPTPGRCERLPIFTTAADGAVVRQTRDGRYYKNVRNEWA 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5245.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8N4_9STRA1.510e-11762.29Phosphatase 2C-like domain-containing protein n=1 ... [more]
D7FNA2_ECTSI3.060e-6064.71PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S1U2X5_9STRA8.730e-5843.43Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6C0I0V0_9ZZZZ1.750e-5643.17PPM-type phosphatase domain-containing protein n=1... [more]
A0A7R9U469_9STRA7.390e-5541.37Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1U505_9STRA4.260e-5041.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A812VXF9_9DINO2.330e-4840.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S2CW64_9STRA1.030e-4655.19Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A5A8D505_CAFRO6.060e-4240.29PPM-type phosphatase domain-containing protein n=3... [more]
A0A1V9Z544_9STRA3.750e-3834.59PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5245contigP-wetherbeei_contig5245:1368..3489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008606724.1
PFAMsPP2C
Model size825
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.59e-31
EggNOG OGs2E2NX@1|root,2S9VW@2759|Eukaryota
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-15_003530.1
DescriptionSerine/threonine phosphatases, family 2C, catalytic domain
Cds size813
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.8061032-UTR-P-wetherbeei_contig5245:1367..13791683186785.8061032-UTR-P-wetherbeei_contig5245:1367..1379Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5245 1368..1379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.8151433-CDS-P-wetherbeei_contig5245:1379..16221683186785.8151433-CDS-P-wetherbeei_contig5245:1379..1622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5245 1380..1622 +
1683186785.8230362-CDS-P-wetherbeei_contig5245:2274..24871683186785.8230362-CDS-P-wetherbeei_contig5245:2274..2487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5245 2275..2487 +
1683186785.8308122-CDS-P-wetherbeei_contig5245:2846..30701683186785.8308122-CDS-P-wetherbeei_contig5245:2846..3070Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5245 2847..3070 +
1683186785.8386693-CDS-P-wetherbeei_contig5245:3356..34891683186785.8386693-CDS-P-wetherbeei_contig5245:3356..3489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5245 3357..3489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5245.1.1prot_P-wetherbeei_contig5245.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5245 1380..3489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5245.1.1

>prot_P-wetherbeei_contig5245.1.1 ID=prot_P-wetherbeei_contig5245.1.1|Name=mRNA_P-wetherbeei_contig5245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
MKVRLSFRTDIGGMHENQDDCFVWRHPSSGSVVIGVLDGHGRDVGQLASA
CVKEFMLAWLARRWGEVLADPAEAFRVMFAEAHVSMLHAFREHLTAQGWA
VKEQGGYLMKRRSLAQPWTCVHGGTSGSVVAVVEGRRLLTANVGDSSCLL
AAPCTDPGTVGHVPGPGGAPAPAVNIGAGETPTAADAAATADVQTLLLTA
DHSPESRREFCRMRLTHPSPANPRVPNLLVVYDSPTPVKLKCNPVFELDA
SGTPRVTGRGRYYKNVRREWA
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mRNA from alignment at P-wetherbeei_contig5245:1368..3489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5245.1.1 ID=mRNA_P-wetherbeei_contig5245.1.1|Name=mRNA_P-wetherbeei_contig5245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2122bp|location=Sequence derived from alignment at P-wetherbeei_contig5245:1368..3489+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGCTGCAGATGAAGGTGCGTTTGTCGTTCCGGACGGACATTGGCGG GATGCACGAGAACCAGGACGACTGCTTCGTGTGGCGGCACCCGAGCTCGG GCAGCGTGGTGATCGGCGTGCTGGACGGACATGGCCGCGACGTCGGCCAG CTGGCGTCGGCGTGCGTCAAGGAGTTCATGCTGGCATGGCTAGCGCGCCG CTGGGGAGAGGTGCTGGCGGATCCCGCCGAGGCCTTCCGTGTCATGTTCG CAGAGGTGAGATGAGAGGGGGGCCAGGCGGGGAGGGGTTGGACGATGGCT GAATGTCATATGTGCTTCAATTTCGTGATGTAACCCGACACTTATGGGAG CCTGTTGCTTTGTCTCACTGTTTCCCTCTTTGTTCCGCGTTTCGGCACTA AGGAGATCGGCGTTTCACTTTATGGGCTGACTTCCGGGATGAAAGCCGAA GGCTGTGTCCGAAACAGCATCATCCCTCTCTGGAAAGCGTTCTTTGCTTC TTTCGTGGCTAGCCTTTTGGCGGTTTTCTTTAGTGAAAGCCTGGCCGTGC TAACGCGATGCCAAGAGGTAACCACGTTGTCGTTACAGGACGCGGTTTTC GTTTTGTGACAGTACGAGTCTGTTTTTCTCATATCGCCCTTGCGCAATCA CTAACCCCTCCATTCTCGCTGCGGTCGTCCGCCTGCTGTCGTTACCCATC TCTTTCACACGCCTTTCAACGTTCGGCATGGCGTTCTGCCATTGTGGAAC TGCCTCTCCTGCACGCAACGCACGGCGGCGCTGTTCCGCTTGCGGCGCAC GGTGGTTTCGGAACCGACGGCGCCGGAACCGGCGGGGTGCCGACCGAACC GACTTTGTTAATGGTCCACATTTTTCCTTCTGCGACTGATGTGTTTTTCC CCGGTAGGCGCACGTGTCGATGCTGCACGCGTTCCGGGAGCACCTGACAG CGCAGGGGTGGGCCGTGAAGGAGCAGGGCGGCTACCTCATGAAGCGCCGC AGCCTAGCACAGCCCTGGACCTGCGTGCATGGTGGCACGAGCGGCAGCGT AGTAGCAGTGGTGGAGGGCCGCCGGCTGCTGACAGCCAACGTCGGCGACA GCAGCTGCCTCTTGGCCGCGGTCGGGCGGGAGCTGCGACCAGAGGATCTC GTGAGCCGTGGAAAGGGGCTTGGGGATGTGTGTTTTACGGGCTTGGTTGT AACAGCAACGGCCGAAATAGGCTGGTCTTTCTGTGGCGCCTTGGCATTGC CGTGGTTTTGGATTGGTGGGAAGGACAACGGCAAGATTGCCCTTCACATC TGCGTTGTTATCCAGGTTGTTTCTAGCCTTTGCTTCTTTTGCGTCGTACG GTCTGGAAGCGATGCCACGGCAAGGGAAGTCATGATTTCTGCTTTGTCTC CCCCTATTCTCTTTCCCCATTTCATTCGTATCCGCAGGTCCAGCACAGTT TCTGGGAAGACTCGGGCGGCGTCATGGAGCCGTGCACCGACCCGGGCACG GTGGGGCACGTTCCCGGCCCCGGCGGCGCTCCAGCACCGGCCGTCAACAT CGGGGCAGGGGAGACGCCGACGGCGGCAGACGCGGCGGCGACGGCGGATG TGCAGACGCTGCTGCTGACGGCGGATCACTCGCCGGAAAGCCGGCGGGAG TTCTGCCGCATGCGGCTGACGCACCCGAGCCCGGCCAACCCACGCGTGCC CAAGTGAGTTTTCTTTGCTCTCCTTCTCTTTTTAGCGCGAGTTAATCTGT GCTGGTGGCTGTCAACTCTTTCGCTCTTCTGGGCAGTGGTTTCGCGGCTG ATTGCTAGGGCTTTGACGACAGCGGAACGCTGTTCCGGCTTGTGTAGATG CAGTGTTCCGCGTGTGCACTTTTCTGCGTTTGGCAGTCCATCCTACTTGC CTAACTGATCTGGCGCATCTGCGGCCATCCGCCGCTGCCGCGTGTTGCTG CCGCTTTTCTTTCGCCTCGCTGCCTCTGCCACATTCCAGCCTCCTGGTGG TGTACGACTCGCCGACGCCTGTCAAGCTCAAATGCAACCCGGTGTTCGAG CTCGACGCTTCGGGGACGCCGCGCGTCACGGGCCGCGGCCGCTACTACAA GAATGTGCGGCGCGAGTGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5245:1368..3489+

>mRNA_P-wetherbeei_contig5245.1.1 ID=mRNA_P-wetherbeei_contig5245.1.1|Name=mRNA_P-wetherbeei_contig5245.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig5245:1368..3489+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTGCGTTTGTCGTTCCGGACGGACATTGGCGGGATGCACGAGAA
CCAGGACGACTGCTTCGTGTGGCGGCACCCGAGCTCGGGCAGCGTGGTGA
TCGGCGTGCTGGACGGACATGGCCGCGACGTCGGCCAGCTGGCGTCGGCG
TGCGTCAAGGAGTTCATGCTGGCATGGCTAGCGCGCCGCTGGGGAGAGGT
GCTGGCGGATCCCGCCGAGGCCTTCCGTGTCATGTTCGCAGAGGCGCACG
TGTCGATGCTGCACGCGTTCCGGGAGCACCTGACAGCGCAGGGGTGGGCC
GTGAAGGAGCAGGGCGGCTACCTCATGAAGCGCCGCAGCCTAGCACAGCC
CTGGACCTGCGTGCATGGTGGCACGAGCGGCAGCGTAGTAGCAGTGGTGG
AGGGCCGCCGGCTGCTGACAGCCAACGTCGGCGACAGCAGCTGCCTCTTG
GCCGCGCCGTGCACCGACCCGGGCACGGTGGGGCACGTTCCCGGCCCCGG
CGGCGCTCCAGCACCGGCCGTCAACATCGGGGCAGGGGAGACGCCGACGG
CGGCAGACGCGGCGGCGACGGCGGATGTGCAGACGCTGCTGCTGACGGCG
GATCACTCGCCGGAAAGCCGGCGGGAGTTCTGCCGCATGCGGCTGACGCA
CCCGAGCCCGGCCAACCCACGCGTGCCCAACCTCCTGGTGGTGTACGACT
CGCCGACGCCTGTCAAGCTCAAATGCAACCCGGTGTTCGAGCTCGACGCT
TCGGGGACGCCGCGCGTCACGGGCCGCGGCCGCTACTACAAGAATGTGCG
GCGCGAGTGGGCG
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