mRNA_P-wetherbeei_contig52443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52443.1.1
Unique NamemRNA_P-wetherbeei_contig52443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52443.1.1 vs. uniprot
Match: UPI001AE2B436 (pilus assembly protein TadG-related protein n=1 Tax=Azospirillum soli TaxID=1304799 RepID=UPI001AE2B436)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-11
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  211 FVLVDTTDETENYLFFPLLAAFAPGMDTSATVAPQAVAGFERQLCNAPPLMICNLNEATQGSGAPFNPTP--GQMIRAKMQGGGASWGPGVFGILDAPNAHGASAVRE 528
            FV V T   + N  F P+L     G  TS T A  A+AGF + +C  PP+ ICN N+    S   FN +   G+    +  G GASW PG FG+LDAPN  GASAV +
Sbjct:  158 FVEVTTETLSTNNFFGPVLG----GAQTSQTSAV-AIAGFTQVVCRMPPVWICNPNDNGTSSNPIFNASHWRGREALLRASGAGASWTPGNFGLLDAPNGQGASAVAD 260
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001AE2B4361.550e-1143.52pilus assembly protein TadG-related protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52443contigP-wetherbeei_contig52443:9..536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1219035.NT2_09_00910
PFAMsTad
Model size528
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-07
EggNOG OGsCOG4961@1|root,COG4961@2|Bacteria,1R58C@1224|Proteobacteria,2U1ZI@28211|Alphaproteobacteria,2K3K8@204457|Sphingomonadales
DescriptionPutative Flp pilus-assembly TadE/G-like
Cds size528
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.77663-CDS-P-wetherbeei_contig52443:8..5361683186785.77663-CDS-P-wetherbeei_contig52443:8..536Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52443 9..536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52443.1.1prot_P-wetherbeei_contig52443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52443 9..536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52443.1.1

>prot_P-wetherbeei_contig52443.1.1 ID=prot_P-wetherbeei_contig52443.1.1|Name=mRNA_P-wetherbeei_contig52443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
VDTGFRLTLSGDSAVGVARLIFMSSLGPDPENPYTRSPVAGDVITATWTL
ADGLVLAAGMTSTVADRETGFVLVDTTDETENYLFFPLLAAFAPGMDTSA
TVAPQAVAGFERQLCNAPPLMICNLNEATQGSGAPFNPTPGQMIRAKMQG
GGASWGPGVFGILDAPNAHGASAVRE
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mRNA from alignment at P-wetherbeei_contig52443:9..536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52443.1.1 ID=mRNA_P-wetherbeei_contig52443.1.1|Name=mRNA_P-wetherbeei_contig52443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig52443:9..536+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACACAGGCTTCCGTCTTACCCTGTCGGGCGACAGCGCGGTGGGCGT
GGCCAGGCTCATCTTCATGTCGTCGCTGGGGCCGGATCCGGAAAACCCCT
ACACCCGCTCGCCGGTTGCTGGCGATGTGATCACGGCGACCTGGACATTA
GCGGACGGCCTCGTCCTCGCCGCGGGAATGACCTCCACTGTCGCCGACCG
GGAAACCGGTTTTGTCCTGGTCGACACGACGGATGAGACCGAAAACTACT
TGTTCTTCCCACTGCTCGCCGCCTTCGCGCCGGGCATGGACACCAGCGCG
ACAGTTGCGCCGCAAGCCGTCGCGGGATTCGAACGCCAGCTCTGCAACGC
GCCGCCGCTGATGATCTGCAACCTCAACGAAGCGACGCAGGGCTCAGGCG
CTCCATTCAATCCGACCCCAGGCCAGATGATCCGCGCCAAGATGCAGGGC
GGCGGCGCTAGCTGGGGACCGGGCGTCTTTGGAATTCTCGATGCCCCGAA
CGCTCACGGCGCTTCGGCTGTTCGCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52443:9..536+

>mRNA_P-wetherbeei_contig52443.1.1 ID=mRNA_P-wetherbeei_contig52443.1.1|Name=mRNA_P-wetherbeei_contig52443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig52443:9..536+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACACAGGCTTCCGTCTTACCCTGTCGGGCGACAGCGCGGTGGGCGT
GGCCAGGCTCATCTTCATGTCGTCGCTGGGGCCGGATCCGGAAAACCCCT
ACACCCGCTCGCCGGTTGCTGGCGATGTGATCACGGCGACCTGGACATTA
GCGGACGGCCTCGTCCTCGCCGCGGGAATGACCTCCACTGTCGCCGACCG
GGAAACCGGTTTTGTCCTGGTCGACACGACGGATGAGACCGAAAACTACT
TGTTCTTCCCACTGCTCGCCGCCTTCGCGCCGGGCATGGACACCAGCGCG
ACAGTTGCGCCGCAAGCCGTCGCGGGATTCGAACGCCAGCTCTGCAACGC
GCCGCCGCTGATGATCTGCAACCTCAACGAAGCGACGCAGGGCTCAGGCG
CTCCATTCAATCCGACCCCAGGCCAGATGATCCGCGCCAAGATGCAGGGC
GGCGGCGCTAGCTGGGGACCGGGCGTCTTTGGAATTCTCGATGCCCCGAA
CGCTCACGGCGCTTCGGCTGTTCGCGAA
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