mRNA_P-wetherbeei_contig52441.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52441.1.1
Unique NamemRNA_P-wetherbeei_contig52441.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A1Z9UK85_9GAMM (ABC transporter substrate-binding protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UK85_9GAMM)

HSP 1 Score: 279 bits (713), Expect = 3.990e-92
Identity = 139/153 (90.85%), Postives = 142/153 (92.81%), Query Frame = 1 
Query:    1 MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            MA  LSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHL+D D+LASNHRGHGHCIAKGVEV GMMAEIYGK+TGTC GKGGSMHIADLDTGMMGANGIVGGGPPL CGA LAAK KG  GIAV FCGDGASNQG
Sbjct:    1 MATTLSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLKDSDKLASNHRGHGHCIAKGVEVNGMMAEIYGKKTGTCHGKGGSMHIADLDTGMMGANGIVGGGPPLACGAALAAKMKGTDGIAVVFCGDGASNQG 153
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A3D5DBE5_9GAMM (ABC transporter substrate-binding protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DBE5_9GAMM)

HSP 1 Score: 259 bits (662), Expect = 2.180e-84
Identity = 129/153 (84.31%), Postives = 141/153 (92.16%), Query Frame = 1 
Query:    1 MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            MA  LS+EDLLDAYRTM+TIREFE+RVHVEFAKGGIPGFVHLYAGEEASATGV M+L++DD +ASNHRGHGHCIAKGVEV GMM+EIYG+ +GTC GKGGSMHIADLD GMMGANGIVGGGPPLVCGAGL AK +GKG IA+AF GDGASNQG
Sbjct:    1 MATNLSIEDLLDAYRTMRTIREFEERVHVEFAKGGIPGFVHLYAGEEASATGVCMNLKEDDYIASNHRGHGHCIAKGVEVTGMMSEIYGRGSGTCHGKGGSMHIADLDVGMMGANGIVGGGPPLVCGAGLTAKLRGKGNIALAFFGDGASNQG 153
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A382NY07_9ZZZZ (E1_dh domain-containing protein (Fragment) n=5 Tax=root TaxID=1 RepID=A0A382NY07_9ZZZZ)

HSP 1 Score: 243 bits (621), Expect = 1.750e-78
Identity = 122/149 (81.88%), Postives = 128/149 (85.91%), Query Frame = 1 
Query:   13 LSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            L+ E LL AY TMKTIREFE+RVH+EFA G IPGFVHLYAGEEAS TGV MHL D D +AS HRGHGHCIAKGVEVKGMMAEIYGK TGTC GKGGSMHIADLD GMMGANGIVGGGPPL+CGAGLA K  G GG+AVAF GDG SNQG
Sbjct:    4 LNSERLLQAYETMKTIREFEERVHIEFATGDIPGFVHLYAGEEASGTGVCMHLNDRDSIASTHRGHGHCIAKGVEVKGMMAEIYGKETGTCRGKGGSMHIADLDKGMMGANGIVGGGPPLICGAGLAKKTLGTGGVAVAFVGDGGSNQG 152
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A1AMT0_PELPD (Pyruvate dehydrogenase (Acetyl-transferring) n=3 Tax=Desulfuromonadales TaxID=69541 RepID=A1AMT0_PELPD)

HSP 1 Score: 243 bits (621), Expect = 3.550e-78
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1 
Query:    1 MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            M   L  EDLL AYRTM+ IREFEDR+H+EFA G IPGFVHLY+GEEA ATGV MHL D+DR++S HRGHGHCIAKGV++ GMMAEIYGK+TGTCGGKGGSMHIADL+ GMMGANGIVG GPPL+CGA LAAK KG GG+ VAF GDGASNQG
Sbjct:    1 MTSQLKKEDLLRAYRTMREIREFEDRLHIEFATGKIPGFVHLYSGEEAVATGVCMHLTDEDRISSTHRGHGHCIAKGVDIHGMMAEIYGKKTGTCGGKGGSMHIADLEKGMMGANGIVGAGPPLICGAALAAKFKGNGGVGVAFFGDGASNQG 153
[Close]
BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A381TDX5_9ZZZZ (E1_dh domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A381TDX5_9ZZZZ)

HSP 1 Score: 240 bits (613), Expect = 5.610e-77
Identity = 120/149 (80.54%), Postives = 131/149 (87.92%), Query Frame = 1 
Query:   13 LSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            L+ + LL AY TMKTIREFE+RVHVEFA G +PGFVHLYAGEEASATGV MHL+D D +AS HRGHGHCIAKGV+VKGMMAE+YG+ TGTC GKGGSMHIADLD GMMGANGIVGGGPPLVCGA L+AK  G GG+AVAF GDGASNQG
Sbjct:    3 LNQDQLLQAYETMKTIREFEERVHVEFATGDMPGFVHLYAGEEASATGVCMHLQDRDYIASTHRGHGHCIAKGVDVKGMMAELYGRTTGTCFGKGGSMHIADLDKGMMGANGIVGGGPPLVCGAALSAKTLGTGGVAVAFLGDGASNQG 151
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A4R2L4I0_9GAMM (Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Plasticicumulans lactativorans TaxID=1133106 RepID=A0A4R2L4I0_9GAMM)

HSP 1 Score: 240 bits (612), Expect = 8.450e-77
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1 
Query:    1 MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            M+  L+ +DLL AYRTM+TIREFE+R+HVEFA G IPGFVHLYAGEEASATGV +HLR DDR+AS HRGHGHCIAKG+EV  MMAEIYGK+TG CGGKGGSMH+ADLD GMMGANGIVGGG PL+CGA LAAK KG  G+ V F GDGASNQG
Sbjct:    1 MSATLTRDDLLRAYRTMRTIREFEERLHVEFATGEIPGFVHLYAGEEASATGVCLHLRPDDRIASTHRGHGHCIAKGMEVAPMMAEIYGKKTGICGGKGGSMHVADLDVGMMGANGIVGGGGPLICGAALAAKMKGTDGVGVCFFGDGASNQG 153
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A2E6ZHJ3_9GAMM (ABC transporter substrate-binding protein n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A2E6ZHJ3_9GAMM)

HSP 1 Score: 238 bits (606), Expect = 7.050e-76
Identity = 118/149 (79.19%), Postives = 129/149 (86.58%), Query Frame = 1 
Query:   13 LSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            L  E LL AYRTMKTIREFE+R+HVEFAKGGIPGFVHLYAGEEASA G+ MHL D DR+AS HRGHGHCIAKGV+VKGMMAEIYGK TG C GKGGSMHIADL  GMMGANGI+G G PLVCGAGLAA++ G  G+A++F GDGASNQG
Sbjct:    7 LDKEKLLLAYRTMKTIREFEERLHVEFAKGGIPGFVHLYAGEEASAVGIMMHLHDKDRIASTHRGHGHCIAKGVDVKGMMAEIYGKATGVCAGKGGSMHIADLSKGMMGANGILGAGAPLVCGAGLAAQKLGHDGVAISFVGDGASNQG 155
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: UPI001D0A2003 (thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Acidisoma cellulosilyticum TaxID=2802395 RepID=UPI001D0A2003)

HSP 1 Score: 236 bits (602), Expect = 2.440e-75
Identity = 116/146 (79.45%), Postives = 129/146 (88.36%), Query Frame = 1 
Query:   22 EDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            EDLL AYRTM+TIR+FE+R+HVEFA G IPGFVHLYAGEEASATGV  HLRDDD +AS HRGHGHCIAKGVEV+GMM EIYG+R G CGGKGGSMHIADL  GM+GANGIVGGGPPL+CGA L+AK +  GG+A+AF GDGASNQG
Sbjct:    6 EDLLRAYRTMRTIRDFEERLHVEFATGEIPGFVHLYAGEEASATGVCTHLRDDDFIASTHRGHGHCIAKGVEVQGMMHEIYGRRDGVCGGKGGSMHIADLSKGMLGANGIVGGGPPLICGAALSAKIRKTGGVAIAFLGDGASNQG 151
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BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: A0A6N7I001_9PSEU (ABC transporter substrate-binding protein n=1 Tax=Pseudonocardiaceae bacterium TaxID=1873463 RepID=A0A6N7I001_9PSEU)

HSP 1 Score: 235 bits (600), Expect = 6.630e-75
Identity = 118/149 (79.19%), Postives = 128/149 (85.91%), Query Frame = 1 
Query:   13 LSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            LS E LLDAYRTM+TIR FE+RVH EFA G IPGFVHLYAGEEASATGV  HL D D +AS HRGHGHCIAKGV+VK MMAEIYGKRTG+C GKGGSMHIADL  GM+GANGIVGGGPPL+CG  LAAK++G GG+ VAF GDGASNQG
Sbjct:   13 LSAESLLDAYRTMRTIRMFEERVHDEFATGEIPGFVHLYAGEEASATGVCSHLDDRDAIASTHRGHGHCIAKGVDVKAMMAEIYGKRTGSCQGKGGSMHIADLSKGMLGANGIVGGGPPLICGTALAAKQQGTGGVGVAFFGDGASNQG 161
[Close]
BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Match: UPI001E371D09 (thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha n=1 Tax=Geomonas sp. RF6 TaxID=2897342 RepID=UPI001E371D09)

HSP 1 Score: 235 bits (599), Expect = 7.610e-75
Identity = 116/153 (75.82%), Postives = 129/153 (84.31%), Query Frame = 1 
Query:    1 MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASATGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGGSMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGASNQG 459
            M   L  E+LL AYRTMK IREFE+R+HVEFA G IPGFVHLY+GEEA AT V MHL D+DR++S HRGHGHCIAKGVE+ GMMAEIYGK+TGTCGGKGGSMHIADL+ GMMGANGIVG GPPL+CGAGLAAK K    + +AF GDGASNQG
Sbjct:    1 MLTKLKKEELLKAYRTMKEIREFEERLHVEFATGKIPGFVHLYSGEEAVATAVCMHLNDEDRISSTHRGHGHCIAKGVEIPGMMAEIYGKKTGTCGGKGGSMHIADLEKGMMGANGIVGAGPPLICGAGLAAKFKNNKAVGIAFFGDGASNQG 153
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9UK85_9GAMM3.990e-9290.85ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A3D5DBE5_9GAMM2.180e-8484.31ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A382NY07_9ZZZZ1.750e-7881.88E1_dh domain-containing protein (Fragment) n=5 Tax... [more]
A1AMT0_PELPD3.550e-7877.78Pyruvate dehydrogenase (Acetyl-transferring) n=3 T... [more]
A0A381TDX5_9ZZZZ5.610e-7780.54E1_dh domain-containing protein n=2 Tax=root TaxID... [more]
A0A4R2L4I0_9GAMM8.450e-7777.78Pyruvate dehydrogenase E1 component alpha subunit ... [more]
A0A2E6ZHJ3_9GAMM7.050e-7679.19ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001D0A20032.440e-7579.45thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]
A0A6N7I001_9PSEU6.630e-7579.19ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001E371D097.610e-7575.82thiamine pyrophosphate-dependent dehydrogenase E1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52441contigP-wetherbeei_contig52441:88..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog338966.Ppro_1024
Preferred namepdhA
PFAMsE1_dh
Model size459
Max annot lvl28221|Deltaproteobacteria
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161,ko:K21416
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.82e-79
EggNOG OGsCOG1071@1|root,COG1071@2|Bacteria,1MU5R@1224|Proteobacteria,42MHF@68525|delta/epsilon subdivisions,2WJ1R@28221|Deltaproteobacteria,43SF0@69541|Desulfuromonadales
EC1.2.4.1
DescriptionThe pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
Cds size459
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.7409117-CDS-P-wetherbeei_contig52441:87..5461683186785.7409117-CDS-P-wetherbeei_contig52441:87..546Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52441 88..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52441.1.1prot_P-wetherbeei_contig52441.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52441 88..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52441.1.1

>prot_P-wetherbeei_contig52441.1.1 ID=prot_P-wetherbeei_contig52441.1.1|Name=mRNA_P-wetherbeei_contig52441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MAQALSVEDLLDAYRTMKTIREFEDRVHVEFAKGGIPGFVHLYAGEEASA
TGVGMHLRDDDRLASNHRGHGHCIAKGVEVKGMMAEIYGKRTGTCGGKGG
SMHIADLDTGMMGANGIVGGGPPLVCGAGLAAKRKGKGGIAVAFCGDGAS
NQG
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mRNA from alignment at P-wetherbeei_contig52441:88..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52441.1.1 ID=mRNA_P-wetherbeei_contig52441.1.1|Name=mRNA_P-wetherbeei_contig52441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig52441:88..546+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAAGCACTGTCCGTCGAGGATCTACTCGACGCCTATCGCACGAT
GAAAACCATTCGCGAATTCGAGGACCGCGTCCACGTTGAATTCGCCAAGG
GCGGCATTCCGGGTTTCGTACATCTGTATGCCGGGGAGGAAGCCTCGGCT
ACCGGAGTCGGCATGCATTTACGTGACGATGATCGCCTCGCCAGCAACCA
TCGCGGCCATGGCCATTGCATCGCCAAGGGCGTCGAGGTCAAGGGCATGA
TGGCCGAGATCTACGGCAAGCGCACCGGCACCTGTGGCGGCAAGGGCGGC
TCGATGCATATCGCCGATCTCGACACTGGCATGATGGGCGCCAACGGCAT
CGTCGGTGGCGGGCCACCGCTGGTGTGCGGCGCGGGACTCGCCGCCAAGC
GTAAGGGCAAGGGCGGCATCGCGGTCGCCTTCTGCGGCGACGGCGCGTCC
AACCAGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52441:88..546+

>mRNA_P-wetherbeei_contig52441.1.1 ID=mRNA_P-wetherbeei_contig52441.1.1|Name=mRNA_P-wetherbeei_contig52441.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig52441:88..546+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCAAGCACTGTCCGTCGAGGATCTACTCGACGCCTATCGCACGAT
GAAAACCATTCGCGAATTCGAGGACCGCGTCCACGTTGAATTCGCCAAGG
GCGGCATTCCGGGTTTCGTACATCTGTATGCCGGGGAGGAAGCCTCGGCT
ACCGGAGTCGGCATGCATTTACGTGACGATGATCGCCTCGCCAGCAACCA
TCGCGGCCATGGCCATTGCATCGCCAAGGGCGTCGAGGTCAAGGGCATGA
TGGCCGAGATCTACGGCAAGCGCACCGGCACCTGTGGCGGCAAGGGCGGC
TCGATGCATATCGCCGATCTCGACACTGGCATGATGGGCGCCAACGGCAT
CGTCGGTGGCGGGCCACCGCTGGTGTGCGGCGCGGGACTCGCCGCCAAGC
GTAAGGGCAAGGGCGGCATCGCGGTCGCCTTCTGCGGCGACGGCGCGTCC
AACCAGGGC
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