mRNA_P-wetherbeei_contig5244.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5244.1.1
Unique NamemRNA_P-wetherbeei_contig5244.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5244.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5244contigP-wetherbeei_contig5244:1541..2444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size338
Hectar predicted targeting categoryother localisation
Exons3
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.6448443-CDS-P-wetherbeei_contig5244:1540..16151683186785.6448443-CDS-P-wetherbeei_contig5244:1540..1615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5244 1541..1615 -
1683186785.6560047-CDS-P-wetherbeei_contig5244:1922..20631683186785.6560047-CDS-P-wetherbeei_contig5244:1922..2063Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5244 1923..2063 -
1683186785.6652677-CDS-P-wetherbeei_contig5244:2324..24441683186785.6652677-CDS-P-wetherbeei_contig5244:2324..2444Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5244 2325..2444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5244.1.1prot_P-wetherbeei_contig5244.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5244 1541..2444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5244.1.1

>prot_P-wetherbeei_contig5244.1.1 ID=prot_P-wetherbeei_contig5244.1.1|Name=mRNA_P-wetherbeei_contig5244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
TSKKSCCVDESTESVSVDRKVATYFASVSKQQLLDAFGGQADSTCVSLKQ
SNKRDAGSCCIPALACCIMCCRCQCCPKCPSCCGCCKGCCSCSETTAGSW
KAATSNEITLAE
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mRNA from alignment at P-wetherbeei_contig5244:1541..2444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5244.1.1 ID=mRNA_P-wetherbeei_contig5244.1.1|Name=mRNA_P-wetherbeei_contig5244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=904bp|location=Sequence derived from alignment at P-wetherbeei_contig5244:1541..2444- (Phaeothamnion wetherbeei SAG_119_79)
ACGTCGAAGAAGAGTTGCTGCGTGGACGAGTCGACGGAGAGCGTGTCGGT
GGACCGCAAAGTTGCGACGTACTTCGCCTCCGTCTCCAAGCAGCAGCTGC
TGGATGCGTTCGGCGGGCAGGCGAGTCGGATGAAACGACATGCTTTCACT
AGCTGGCAGTAACCAAAGCCGCAGAGGGGAGGATGAAAACTCTTTGCAGA
AGAAGAGAGGGGAGAGCGCAGACGGCAATACGACAACCGTTGCCGGCGTG
TGTTTTCTTCTTTGGGCTTCGGCGTACATTTGCCATCCAGGGCCGTTAAA
AGGATATGTCAAAACAGGAGAACCAGTAACCAAAAACTGGGATTCTTACG
TCCGAAACCCGAAACCGACAATCACAAACAGGCGGACAGCACGTGCGTAA
GCCTGAAGCAGAGTAACAAGCGCGACGCCGGCAGCTGCTGCATCCCGGCG
CTCGCCTGCTGCATCATGTGCTGCCGCTGCCAGTGCTGCCCTAAGTGCCC
GTCCTGCTGCGGCTGCTGCAAGGTGGGTGGCTCTTTGTGTCGCGGTTTCC
CTTCCACTCCCAGGTCTGTCCGATTCCGATCTGATGTTATCCGACCTCGT
CCATGGTCAGGCTTTGGCGATAATTCTTCTTTCCGCACTTTTCGCTTGGA
ACGCAAGCTCCGGCTGGCCCTGCAGAGGTACCGCCAGTTAGTCTTCCTTC
GTAGCCAGTGGTGCCCGCTAACCACTTTCTGCATCCAGTCGACCGCCGAA
ACGCCAACCGTAACCCAGTTCACCTTCCTTCAACCGCGAAGATACCAATT
GTAACCGTTCGCCAAATACCTTCAAGCAGGGCTGTTGCTCGTGCAGCGAG
ACGACGGCCGGCTCGTGGAAGGCAGCGACGAGCAACGAGATCACGCTGGC
AGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5244:1541..2444-

>mRNA_P-wetherbeei_contig5244.1.1 ID=mRNA_P-wetherbeei_contig5244.1.1|Name=mRNA_P-wetherbeei_contig5244.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig5244:1541..2444- (Phaeothamnion wetherbeei SAG_119_79)
ACGTCGAAGAAGAGTTGCTGCGTGGACGAGTCGACGGAGAGCGTGTCGGT
GGACCGCAAAGTTGCGACGTACTTCGCCTCCGTCTCCAAGCAGCAGCTGC
TGGATGCGTTCGGCGGGCAGGCGGACAGCACGTGCGTAAGCCTGAAGCAG
AGTAACAAGCGCGACGCCGGCAGCTGCTGCATCCCGGCGCTCGCCTGCTG
CATCATGTGCTGCCGCTGCCAGTGCTGCCCTAAGTGCCCGTCCTGCTGCG
GCTGCTGCAAGGGCTGTTGCTCGTGCAGCGAGACGACGGCCGGCTCGTGG
AAGGCAGCGACGAGCAACGAGATCACGCTGGCAGAG
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