mRNA_P-wetherbeei_contig52432.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52432.2.1
Unique NamemRNA_P-wetherbeei_contig52432.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A1S9D3Q6_9GAMM (Putative phospholipid-binding protein MlaC n=1 Tax=Chromatiales bacterium USCg_Taylor TaxID=1934255 RepID=A0A1S9D3Q6_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 1.450e-21
Identity = 44/73 (60.27%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    7 ANTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQ 225
            A   TV+ EI QPGSA +PI YR+H K   WKVFDVSVDGVSL+ TYRASFA+ I+  G+ +LI++LE KN++
Sbjct:  128 ATLVTVRTEIEQPGSAVVPINYRMHVKDNAWKVFDVSVDGVSLVATYRASFASEIRKSGIDSLIKSLETKNEK 200          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A1Z9UAU4_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UAU4_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 2.090e-21
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 AAANTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFA 231
            A   T  V Q +S P   +IPI+YRL+ K G+WKVFDVSVDGVSL+KTYRASF + IKN GL  L++ L  KN+ F+
Sbjct:  125 AGGRTVVVMQNVSGPNIKTIPIVYRLYRKRGEWKVFDVSVDGVSLVKTYRASFGSMIKNKGLLGLVETLSEKNRLFS 201          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A523PEV9_9PROT (ABC transporter substrate-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PEV9_9PROT)

HSP 1 Score: 89.7 bits (221), Expect = 1.690e-20
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    1 AAANTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQF 228
            A   T  V+QEI Q  S  I + YRLHS  GDWK+FDV+VDGVSL+KTYRASF++ IKN GL ALI  L  KN++ 
Sbjct:  126 ATGRTVVVRQEIEQTSSEPILLGYRLHSIGGDWKIFDVAVDGVSLVKTYRASFSSIIKNGGLAALIDRLRLKNKEI 201          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A3D5DCI4_9GAMM (Toluene tolerance protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCI4_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 1.880e-19
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   13 TATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFA 231
            T  V+QEI Q GS  I I YRLH+  G+WKVFDV+VDGVSL++TYRASFA+ I++ GL  LI  L  KNQ+ +
Sbjct:  130 TVEVRQEIEQSGSEPILIGYRLHNTLGNWKVFDVTVDGVSLVRTYRASFASLIRDGGLLGLIDGLSEKNQEIS 202          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A2D7S688_9GAMM (Toluene tolerance protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2D7S688_9GAMM)

HSP 1 Score: 85.9 bits (211), Expect = 5.380e-19
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   10 NTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKN 219
            N A VK E++   SA +PI+YR+H K  +WKV DV+VDGVSL+ TYR SFA  IKNDG  +L++ L  KN
Sbjct:  126 NLAVVKTELTSTSSAQLPILYRMHQKNQEWKVVDVAVDGVSLVTTYRGSFATQIKNDGFDSLLEQLSKKN 195          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A353VX51_9GAMM (Toluene tolerance protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353VX51_9GAMM)

HSP 1 Score: 82.0 bits (201), Expect = 2.520e-17
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   10 NTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFAA 234
            N A VK E++   SA +PI+YR+H K  +WKV DV+VDGVSL+ TYR SFA  IK +G  +L+  L  KN +  A
Sbjct:  148 NLAIVKTELTSSSSAQLPILYRMHQKNEEWKVVDVAVDGVSLVTTYRGSFATQIKKNGFDSLLSELSKKNARLEA 222          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A3B1A4X1_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1A4X1_9ZZZZ)

HSP 1 Score: 81.3 bits (199), Expect = 3.850e-17
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   19 TVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFAA 234
            TV+ EI Q G   IPI Y++H K G WK+FDVSVDG+SL+  YR+SFA  I+ DGL  LI  L  +NQ   A
Sbjct:  136 TVRTEIQQSGGFPIPISYKMHMKEGAWKIFDVSVDGISLVANYRSSFAKEIRKDGLEKLIARLADRNQPAKA 207          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A836U0S8_9GAMM (ABC transporter substrate-binding protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836U0S8_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 7.200e-17
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   10 NTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFAAK 237
            N A VK E+ + G+   P+ YR++    +WK+ DV+VDGVSL+ TYR SFA+ IK DG  +LIQ L  KN++ A K
Sbjct:  131 NLAVVKTELVRSGAKPFPVNYRMYQNNDEWKIVDVAVDGVSLVSTYRGSFASQIKKDGFDSLIQKLVDKNEKLAKK 206          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A1G0KD30_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0KD30_9GAMM)

HSP 1 Score: 80.5 bits (197), Expect = 8.980e-17
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   10 NTATVKQEISQPGS-ASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFA 231
            N   VK E+ QPG  A++PI YR+H   G WKV DVSVDGVSL+ TYR SFA+ I   GL  LI  L  +NQ+ A
Sbjct:  131 NVVIVKTEVDQPGGGAAVPIHYRMHISDGSWKVVDVSVDGVSLVSTYRGSFASEISKGGLDNLIAKLVDRNQKIA 205          
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Match: A0A849MLV4_9PROT (ABC transporter substrate-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MLV4_9PROT)

HSP 1 Score: 80.1 bits (196), Expect = 1.010e-16
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   10 NTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYRASFAAAIKNDGLPALIQNLEAKNQQFA 231
            N A VK E++  G+   P+ YR+H     WKV DV+VDGVSL+ TYR SFA+ IK +G  +LIQ L  KN++ A
Sbjct:  131 NLAVVKTELTSAGAQPFPVAYRMHQANEQWKVVDVAVDGVSLVSTYRGSFASQIKKEGFDSLIQKLVDKNEKLA 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52432.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S9D3Q6_9GAMM1.450e-2160.27Putative phospholipid-binding protein MlaC n=1 Tax... [more]
A0A1Z9UAU4_9GAMM2.090e-2157.14Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A523PEV9_9PROT1.690e-2059.21ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A3D5DCI4_9GAMM1.880e-1958.90Toluene tolerance protein n=1 Tax=Gammaproteobacte... [more]
A0A2D7S688_9GAMM5.380e-1955.71Toluene tolerance protein n=1 Tax=Legionellales ba... [more]
A0A353VX51_9GAMM2.520e-1750.67Toluene tolerance protein n=2 Tax=Gammaproteobacte... [more]
A0A3B1A4X1_9ZZZZ3.850e-1754.17Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A836U0S8_9GAMM7.200e-1748.68ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A1G0KD30_9GAMM8.980e-1754.67Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A849MLV4_9PROT1.010e-1650.00ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52432contigP-wetherbeei_contig52432:293..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog292415.Tbd_1896
PFAMsMlaC
Model size246
Max annot lvl119069|Hydrogenophilales
KEGG koko:K07323
KEGG TC3.A.1.27.3
KEGG Pathwayko02010,map02010
KEGG ModuleM00210
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.71e-16
EggNOG OGsCOG2854@1|root,COG2854@2|Bacteria,1NKFA@1224|Proteobacteria,2VR85@28216|Betaproteobacteria,1KRPH@119069|Hydrogenophilales
DescriptionMlaC protein
Cds size246
COG categoryQ
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186785.6147346-CDS-P-wetherbeei_contig52432:292..5381683186785.6147346-CDS-P-wetherbeei_contig52432:292..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52432 293..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52432.2.1prot_P-wetherbeei_contig52432.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52432 293..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52432.2.1

>prot_P-wetherbeei_contig52432.2.1 ID=prot_P-wetherbeei_contig52432.2.1|Name=mRNA_P-wetherbeei_contig52432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
AAANTATVKQEISQPGSASIPIIYRLHSKTGDWKVFDVSVDGVSLIKTYR
ASFAAAIKNDGLPALIQNLEAKNQQFAAKSQ*
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mRNA from alignment at P-wetherbeei_contig52432:293..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52432.2.1 ID=mRNA_P-wetherbeei_contig52432.2.1|Name=mRNA_P-wetherbeei_contig52432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig52432:293..538- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCAATACTGCGACCGTCAAGCAGGAAATTTCGCAGCCGGGCAG TGCGTCGATTCCGATCATCTATCGGTTGCACAGCAAGACCGGTGACTGGA AAGTTTTCGACGTGTCGGTTGACGGTGTGAGCCTGATCAAGACCTACCGC GCGTCGTTTGCTGCTGCCATCAAGAACGACGGCCTGCCGGCGCTGATCCA GAATCTGGAAGCGAAGAACCAGCAGTTCGCCGCCAAGTCGCAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52432:293..538-

>mRNA_P-wetherbeei_contig52432.2.1 ID=mRNA_P-wetherbeei_contig52432.2.1|Name=mRNA_P-wetherbeei_contig52432.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig52432:293..538- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCCAATACTGCGACCGTCAAGCAGGAAATTTCGCAGCCGGGCAG
TGCGTCGATTCCGATCATCTATCGGTTGCACAGCAAGACCGGTGACTGGA
AAGTTTTCGACGTGTCGGTTGACGGTGTGAGCCTGATCAAGACCTACCGC
GCGTCGTTTGCTGCTGCCATCAAGAACGACGGCCTGCCGGCGCTGATCCA
GAATCTGGAAGCGAAGAACCAGCAGTTCGCCGCCAAGTCGCAATAA
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